Wall clock time and date at job start Tue Mar 31 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35806 * 116.99870 * 2 1 4 4 C 1.38999 * 119.90989 * 0.02562 * 3 2 1 5 5 C 1.37735 * 120.09132 * 180.02562 * 4 3 2 6 6 C 1.39747 * 119.90709 * 359.97438 * 5 4 3 7 7 C 1.47855 * 120.08595 * 179.97438 * 6 5 4 8 8 C 1.40327 * 120.34921 * 309.97160 * 7 6 5 9 9 C 1.36635 * 118.60313 * 180.02562 * 8 7 6 10 10 C 1.40903 * 119.26071 * 0.02562 * 9 8 7 11 11 C 1.40932 * 119.67665 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.40073 * 120.00359 * 179.97438 * 11 10 9 14 14 N 1.30729 * 120.00023 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00149 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47224 * 60.00097 * 15 13 11 17 17 H 1.48500 * 109.47233 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47186 * 300.00157 * 15 13 11 19 19 N 1.33796 * 120.64936 * 359.97438 * 10 9 8 20 20 C 1.31174 * 121.50662 * 0.02562 * 19 10 9 21 21 C 1.39711 * 119.82293 * 0.25116 * 6 5 4 22 22 C 1.50700 * 120.04254 * 179.75324 * 21 6 5 23 23 C 1.37777 * 119.90797 * 359.49206 * 21 6 5 24 24 C 1.50697 * 119.95082 * 180.27606 * 23 21 6 25 25 H 1.08999 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47465 * 300.00163 * 1 2 3 27 27 H 1.09000 * 109.46852 * 60.00139 * 1 2 3 28 28 H 1.08000 * 119.95626 * 359.97438 * 4 3 2 29 29 H 1.07995 * 120.04652 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.69863 * 0.05223 * 8 7 6 31 31 H 1.08000 * 120.36696 * 179.97438 * 9 8 7 32 32 H 0.96992 * 120.00600 * 179.97438 * 14 13 11 33 33 H 1.08008 * 119.65721 * 180.27439 * 20 19 10 34 34 H 1.08997 * 109.47799 * 89.99551 * 22 21 6 35 35 H 1.08998 * 109.46579 * 210.00589 * 22 21 6 36 36 H 1.09002 * 109.46961 * 329.99194 * 22 21 6 37 37 H 1.09011 * 109.46781 * 270.25565 * 24 23 21 38 38 H 1.09002 * 109.47886 * 30.25493 * 24 23 21 39 39 H 1.09003 * 109.47127 * 150.25959 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2866 2.3746 0.0005 5 6 1.9080 3.6038 0.0000 6 6 3.3034 3.6791 -0.0005 7 6 3.9746 4.9966 -0.0017 8 6 3.6029 5.9808 -0.9303 9 6 4.2471 7.1854 -0.8998 10 6 5.2589 7.4013 0.0567 11 6 5.9287 8.6407 0.0964 12 1 5.6652 9.4195 -0.6039 13 6 6.9353 8.8629 1.0447 14 7 7.2539 7.9204 1.8928 15 14 7.8224 10.5059 1.0977 16 1 6.8411 11.5903 1.3555 17 1 8.8359 10.4865 2.1830 18 1 8.4961 10.7469 -0.2037 19 7 5.5895 6.4416 0.9284 20 6 4.9894 5.2752 0.9240 21 6 4.0625 2.5063 -0.0058 22 6 5.5676 2.5818 -0.0121 23 6 3.4332 1.2806 0.0001 24 6 4.2512 0.0149 0.0006 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2082 2.3155 0.0005 29 1 1.3176 4.5081 0.0000 30 1 2.8238 5.7904 -1.6536 31 1 3.9841 7.9631 -1.6015 32 1 7.9512 8.0740 2.5493 33 1 5.2770 4.5234 1.6442 34 1 5.9349 2.5982 1.0140 35 1 5.9728 1.7120 -0.5293 36 1 5.8837 3.4897 -0.5258 37 1 4.4483 -0.2907 -1.0270 38 1 5.1959 0.1929 0.5143 39 1 3.7008 -0.7731 0.5148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243997364.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:08 Heat of formation + Delta-G solvation = 5.889993 kcal Electronic energy + Delta-G solvation = -21279.659742 eV Core-core repulsion = 18151.838199 eV Total energy + Delta-G solvation = -3127.821543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02407 -38.42357 -37.12028 -33.85384 -33.07034 -31.76449 -30.64191 -29.31005 -27.53335 -27.11703 -25.69026 -25.25559 -22.01597 -21.74098 -20.34833 -19.91509 -17.54878 -17.34772 -16.21272 -15.67514 -15.61422 -15.29111 -14.38855 -14.11306 -13.95229 -13.64158 -13.56990 -12.86122 -12.70675 -12.46444 -12.38655 -12.20273 -11.94106 -11.86973 -11.73557 -11.50872 -11.37110 -11.17649 -11.09949 -10.78695 -10.60924 -10.44960 -10.29198 -9.93978 -9.43032 -8.38554 -8.20769 -8.00073 -7.60950 -7.13182 -6.49345 -4.58116 1.72623 1.75425 2.72141 3.02818 3.04677 3.05861 3.14707 3.46482 3.86285 4.16274 4.67026 5.01550 5.09440 5.14300 5.24010 5.41270 5.46338 5.57400 5.65394 5.78964 5.86174 5.87590 5.96142 6.01899 6.13695 6.15937 6.17658 6.28024 6.40510 6.64565 6.69752 6.76333 6.79476 6.87308 7.02942 7.16548 7.18775 7.34947 7.55017 7.67878 7.78747 7.97258 8.13272 8.55050 8.83950 10.03661 10.20355 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.003660 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.883676 B = 7647.995148 C = 8130.588711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.096 3.904 4 C -0.205 4.205 5 C -0.094 4.094 6 C -0.010 4.010 7 C -0.269 4.269 8 C -0.037 4.037 9 C -0.274 4.274 10 C 0.254 3.746 11 C -0.419 4.419 12 H 0.085 0.915 13 C 0.066 3.934 14 N -0.705 5.705 15 Si 0.909 3.091 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.264 1.264 19 N -0.488 5.488 20 C 0.154 3.846 21 C -0.057 4.057 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.101 4.101 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.276 0.724 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -10.497 -2.010 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.052 3.948 4 C -0.223 4.223 5 C -0.112 4.112 6 C -0.011 4.011 7 C -0.275 4.275 8 C -0.060 4.060 9 C -0.297 4.297 10 C 0.131 3.869 11 C -0.449 4.449 12 H 0.103 0.897 13 C -0.161 4.161 14 N -0.326 5.326 15 Si 0.733 3.267 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.188 1.188 19 N -0.200 5.200 20 C -0.014 4.014 21 C -0.057 4.057 22 C -0.167 4.167 23 C -0.115 4.115 24 C -0.158 4.158 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.935 -10.492 -1.232 12.117 hybrid contribution -0.820 0.734 -0.607 1.257 sum -6.755 -9.757 -1.840 12.009 Atomic orbital electron populations 1.22936 0.79348 1.03107 1.01093 1.85970 1.20508 1.27457 1.89499 1.18734 0.91594 0.83693 1.00751 1.21003 0.99105 0.92429 1.09811 1.21044 0.94196 0.96355 0.99628 1.18685 0.91843 0.92466 0.98066 1.18937 1.07588 0.94236 1.06708 1.20582 0.96709 0.92871 0.95864 1.21388 1.04732 0.97996 1.05583 1.18617 0.88816 0.92368 0.87143 1.19648 1.14066 0.97963 1.13200 0.89718 1.26139 0.96890 0.98321 0.94715 1.70115 1.20823 1.31437 1.10177 0.86354 0.79418 0.81905 0.79007 1.18828 1.20081 1.18814 1.68806 1.27082 0.99838 1.24242 1.22741 0.90079 0.94608 0.93938 1.19711 0.95988 0.90878 0.99142 1.20851 0.90914 1.02751 1.02226 1.18907 0.90240 0.95398 1.06983 1.20579 0.98960 0.94537 1.01693 0.88882 0.93038 0.93073 0.86380 0.86337 0.88800 0.88356 0.91303 0.86340 0.91245 0.92279 0.90403 0.91982 0.91631 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.47 9.52 -19.13 -0.18 -4.65 16 3 C 0.10 1.53 6.67 -39.03 -0.26 1.27 16 4 C -0.20 -3.17 9.02 -39.48 -0.36 -3.53 16 5 C -0.09 -1.64 9.53 -39.20 -0.37 -2.01 16 6 C -0.01 -0.18 5.49 -104.85 -0.58 -0.76 16 7 C -0.27 -5.92 4.74 -104.46 -0.50 -6.42 16 8 C -0.04 -0.82 9.59 -39.38 -0.38 -1.19 16 9 C -0.27 -6.61 9.76 -39.15 -0.38 -6.99 16 10 C 0.25 6.79 6.55 -84.98 -0.56 6.24 16 11 C -0.42 -10.90 9.12 -37.87 -0.35 -11.25 16 12 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 13 C 0.07 1.63 5.50 -17.33 -0.10 1.54 16 14 N -0.71 -18.27 11.44 55.55 0.64 -17.64 16 15 Si 0.91 18.02 29.56 -169.99 -5.02 12.99 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 19 N -0.49 -13.15 7.83 -10.83 -0.08 -13.23 16 20 C 0.15 3.67 9.09 -17.11 -0.16 3.52 16 21 C -0.06 -1.01 5.88 -104.24 -0.61 -1.62 16 22 C -0.11 -1.83 7.63 36.01 0.27 -1.56 16 23 C -0.11 -1.87 5.89 -104.53 -0.62 -2.48 16 24 C -0.10 -1.35 8.95 36.00 0.32 -1.03 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 28 H 0.12 1.50 6.28 -52.49 -0.33 1.17 16 29 H 0.12 1.97 8.05 -52.49 -0.42 1.55 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.28 6.46 8.29 -40.82 -0.34 6.13 16 33 H 0.12 2.62 6.90 -52.48 -0.36 2.26 16 34 H 0.07 1.10 7.52 -51.93 -0.39 0.71 16 35 H 0.06 0.83 6.71 -51.93 -0.35 0.48 16 36 H 0.08 1.46 6.47 -51.93 -0.34 1.12 16 37 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.06 0.81 6.71 -51.93 -0.35 0.46 16 39 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -28.86 322.89 -8.36 -37.23 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.96 Total: 5.43 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -3.61 Total: -25.00 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.55 Total: -30.87 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.18 Total: -4.65 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.86 -8.36 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243997364.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.117 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds