Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35849 * 116.99626 * 2 1 4 4 C 1.38870 * 119.93876 * 359.97438 * 3 2 1 5 5 C 1.37861 * 120.06955 * 180.02562 * 4 3 2 6 6 C 1.39425 * 119.93386 * 359.97438 * 5 4 3 7 7 C 1.48326 * 120.06902 * 179.97438 * 6 5 4 8 8 C 1.40065 * 120.82161 * 129.99708 * 7 6 5 9 9 C 1.38477 * 119.41966 * 180.02562 * 8 7 6 10 10 N 1.31503 * 121.14789 * 0.02562 * 9 8 7 11 11 C 1.33657 * 121.79860 * 359.97438 * 10 9 8 12 12 C 1.41430 * 119.77328 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00041 * 186.27782 * 12 11 10 14 14 C 1.40031 * 120.00128 * 6.00488 * 12 11 10 15 15 N 1.30741 * 120.00251 * 354.01276 * 14 12 11 16 16 Si 1.86809 * 119.99900 * 174.01121 * 14 12 11 17 17 H 1.48498 * 109.46795 * 94.98701 * 16 14 12 18 18 H 1.48497 * 109.47059 * 214.98752 * 16 14 12 19 19 H 1.48500 * 109.47217 * 334.98768 * 16 14 12 20 20 C 1.39348 * 120.81998 * 310.30322 * 7 6 5 21 21 C 1.39388 * 119.86592 * 0.27446 * 6 5 4 22 22 C 1.50705 * 120.03192 * 179.70825 * 21 6 5 23 23 C 1.37908 * 119.93336 * 359.44496 * 21 6 5 24 24 C 1.50698 * 119.96412 * 180.25568 * 23 21 6 25 25 H 1.09001 * 109.46864 * 60.00495 * 1 2 3 26 26 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47256 * 299.99943 * 1 2 3 28 28 H 1.08002 * 119.96488 * 359.97438 * 4 3 2 29 29 H 1.08004 * 120.03405 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.29247 * 359.97438 * 8 7 6 31 31 H 1.07994 * 119.42700 * 179.97438 * 9 8 7 32 32 H 0.96992 * 120.00122 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.58883 * 359.96188 * 20 7 6 34 34 H 1.09001 * 109.47210 * 89.99403 * 22 21 6 35 35 H 1.09002 * 109.47017 * 209.99637 * 22 21 6 36 36 H 1.09008 * 109.46602 * 329.99181 * 22 21 6 37 37 H 1.09004 * 109.47206 * 270.32228 * 24 23 21 38 38 H 1.09000 * 109.47230 * 30.32332 * 24 23 21 39 39 H 1.09007 * 109.46687 * 150.32373 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 1.2880 2.3743 -0.0005 5 6 1.9110 3.6041 -0.0011 6 6 3.3032 3.6787 -0.0005 7 6 3.9766 5.0003 -0.0017 8 6 4.9909 5.2897 0.9199 9 6 5.5996 6.5332 0.8932 10 7 5.2417 7.4472 0.0180 11 6 4.2799 7.2217 -0.8823 12 6 3.9295 8.2352 -1.8043 13 1 3.0869 8.0959 -2.4655 14 6 4.6714 9.4217 -1.8561 15 7 5.6127 9.6430 -0.9762 16 14 4.3161 10.6883 -3.1825 17 1 3.3813 11.7125 -2.6511 18 1 5.5840 11.3419 -3.5950 19 1 3.7005 10.0174 -4.3555 20 6 3.6115 5.9868 -0.9156 21 6 4.0610 2.5088 -0.0052 22 6 5.5661 2.5852 -0.0113 23 6 3.4322 1.2815 0.0012 24 6 4.2508 0.0163 0.0019 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2095 2.3159 -0.0014 29 1 1.3212 4.5088 -0.0019 30 1 5.2950 4.5499 1.6455 31 1 6.3814 6.7567 1.6040 32 1 6.1268 10.4647 -1.0123 33 1 2.8311 5.8038 -1.6393 34 1 5.9332 2.6023 1.0149 35 1 5.9720 1.7154 -0.5280 36 1 5.8818 3.4931 -0.5254 37 1 4.4490 -0.2889 -1.0256 38 1 5.1950 0.1948 0.5164 39 1 3.7005 -0.7722 0.5154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244002732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = 7.599479 kcal Electronic energy + Delta-G solvation = -21287.082414 eV Core-core repulsion = 18159.335000 eV Total energy + Delta-G solvation = -3127.747414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18957 -38.43986 -37.21051 -33.72758 -33.23959 -32.14588 -30.05351 -29.37510 -27.57813 -26.98139 -25.80841 -25.55072 -22.59688 -21.31379 -20.46402 -20.10328 -17.47500 -17.29006 -16.34833 -15.75418 -15.61953 -14.91868 -14.37063 -14.17693 -14.02621 -13.76213 -13.62401 -13.19379 -12.83464 -12.61717 -12.47931 -12.20163 -12.07446 -11.90110 -11.85141 -11.50723 -11.31819 -11.19451 -10.95852 -10.82882 -10.64665 -10.48019 -10.38206 -9.86891 -9.34590 -8.45435 -8.31486 -7.64035 -7.55725 -7.39463 -6.40707 -4.52148 1.56328 1.60544 2.75963 2.96477 3.08926 3.11689 3.19693 3.34074 3.94662 4.04170 4.74663 4.92579 4.97728 5.07968 5.12319 5.26568 5.35930 5.43153 5.52827 5.63436 5.78011 5.81371 5.89205 5.96564 6.03622 6.09590 6.13827 6.28030 6.45298 6.54082 6.58338 6.66730 6.76283 6.86424 6.99072 7.03106 7.15636 7.34322 7.49560 7.59252 7.73238 8.01394 8.22933 8.65854 8.91923 10.11768 10.32011 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.003928 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.919717 B = 7125.734918 C = 7775.612650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.113 3.887 4 C -0.210 4.210 5 C -0.073 4.073 6 C -0.052 4.052 7 C 0.007 3.993 8 C -0.299 4.299 9 C 0.122 3.878 10 N -0.484 5.484 11 C 0.256 3.744 12 C -0.434 4.434 13 H 0.083 0.917 14 C 0.070 3.930 15 N -0.717 5.717 16 Si 0.905 3.095 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.261 1.261 20 C -0.255 4.255 21 C -0.038 4.038 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.101 4.101 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.272 0.728 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -13.706 1.402 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.069 3.931 4 C -0.229 4.229 5 C -0.091 4.091 6 C -0.052 4.052 7 C 0.000 4.000 8 C -0.323 4.323 9 C -0.043 4.043 10 N -0.197 5.197 11 C 0.131 3.869 12 C -0.466 4.466 13 H 0.101 0.899 14 C -0.155 4.155 15 N -0.338 5.338 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.185 1.185 20 C -0.278 4.278 21 C -0.038 4.038 22 C -0.169 4.169 23 C -0.122 4.122 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.645 -12.906 1.436 13.792 hybrid contribution -1.005 -0.059 -0.523 1.135 sum -5.650 -12.965 0.913 14.172 Atomic orbital electron populations 1.22983 0.79034 1.03340 1.01282 1.85996 1.20786 1.27253 1.89189 1.18759 0.91639 0.83843 0.98904 1.21044 0.99460 0.92240 1.10132 1.21027 0.93865 0.96865 0.97368 1.18871 0.92517 0.92745 1.01058 1.18484 0.95045 0.90717 0.95723 1.21327 1.05350 0.99913 1.05677 1.22447 0.96449 0.89506 0.95872 1.68726 1.15719 1.30558 1.04729 1.18529 0.87834 0.90218 0.90282 1.19606 1.12447 0.98689 1.15827 0.89923 1.26051 0.94370 0.98898 0.96179 1.70135 1.13293 1.22275 1.28083 0.86348 0.78823 0.80441 0.81439 1.19504 1.20048 1.18494 1.21824 1.06497 0.95663 1.03814 1.19637 0.96173 0.90676 0.97352 1.20901 0.90638 1.03014 1.02368 1.18931 0.90339 0.95448 1.07530 1.20577 0.98911 0.94370 1.01875 0.92848 0.88686 0.92882 0.85889 0.85663 0.88617 0.86422 0.91656 0.88310 0.91067 0.92104 0.90102 0.91804 0.91592 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.23 9.52 -19.27 -0.18 -4.41 16 3 C 0.11 1.72 6.66 -39.13 -0.26 1.46 16 4 C -0.21 -3.16 9.02 -39.49 -0.36 -3.52 16 5 C -0.07 -1.27 9.53 -39.28 -0.37 -1.65 16 6 C -0.05 -0.99 5.51 -104.88 -0.58 -1.57 16 7 C 0.01 0.14 4.71 -104.65 -0.49 -0.35 16 8 C -0.30 -6.59 8.04 -38.81 -0.31 -6.90 16 9 C 0.12 2.93 11.17 -17.60 -0.20 2.74 16 10 N -0.48 -13.32 7.87 -11.21 -0.09 -13.41 16 11 C 0.26 6.99 6.55 -85.02 -0.56 6.43 16 12 C -0.43 -11.65 9.14 -37.70 -0.34 -11.99 16 13 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 14 C 0.07 1.79 5.49 -17.34 -0.10 1.69 16 15 N -0.72 -19.12 11.49 55.55 0.64 -18.48 16 16 Si 0.91 18.60 29.56 -169.99 -5.03 13.57 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 C -0.26 -6.25 9.36 -38.34 -0.36 -6.61 16 21 C -0.04 -0.65 5.88 -104.31 -0.61 -1.27 16 22 C -0.11 -1.75 7.65 36.01 0.28 -1.48 16 23 C -0.12 -1.90 5.89 -104.52 -0.62 -2.52 16 24 C -0.10 -1.26 8.95 36.00 0.32 -0.94 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.12 1.51 6.28 -52.49 -0.33 1.18 16 29 H 0.13 2.12 8.05 -52.48 -0.42 1.70 16 30 H 0.10 1.89 6.96 -52.49 -0.37 1.52 16 31 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 32 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 33 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 34 H 0.07 1.02 7.55 -51.93 -0.39 0.63 16 35 H 0.06 0.80 6.72 -51.93 -0.35 0.45 16 36 H 0.08 1.44 6.46 -51.92 -0.34 1.11 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.75 6.72 -51.93 -0.35 0.40 16 39 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -29.95 323.24 -8.32 -38.27 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.97 Total: 4.81 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -3.57 Total: -25.21 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.55 Total: -31.89 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.18 Total: -4.41 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.95 -8.32 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244002732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.865 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds