Wall clock time and date at job start Tue Mar 31 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35849 * 116.99626 * 2 1 4 4 C 1.38870 * 119.93876 * 359.97438 * 3 2 1 5 5 C 1.37861 * 120.06955 * 180.02562 * 4 3 2 6 6 C 1.39425 * 119.93386 * 359.97438 * 5 4 3 7 7 C 1.48326 * 120.06902 * 179.97438 * 6 5 4 8 8 C 1.40065 * 120.82161 * 129.99708 * 7 6 5 9 9 C 1.38477 * 119.41966 * 180.02562 * 8 7 6 10 10 N 1.31503 * 121.14789 * 0.02562 * 9 8 7 11 11 C 1.33657 * 121.79860 * 359.97438 * 10 9 8 12 12 C 1.41430 * 119.77328 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00041 * 186.27782 * 12 11 10 14 14 C 1.40031 * 120.00128 * 6.00488 * 12 11 10 15 15 N 1.30741 * 120.00251 * 354.01276 * 14 12 11 16 16 Si 1.86809 * 119.99900 * 174.01121 * 14 12 11 17 17 H 1.48498 * 109.46795 * 94.98701 * 16 14 12 18 18 H 1.48497 * 109.47059 * 214.98752 * 16 14 12 19 19 H 1.48500 * 109.47217 * 334.98768 * 16 14 12 20 20 C 1.39348 * 120.81998 * 310.30322 * 7 6 5 21 21 C 1.39388 * 119.86592 * 0.27446 * 6 5 4 22 22 C 1.50705 * 120.03192 * 179.70825 * 21 6 5 23 23 C 1.37908 * 119.93336 * 359.44496 * 21 6 5 24 24 C 1.50698 * 119.96412 * 180.25568 * 23 21 6 25 25 H 1.09001 * 109.46864 * 60.00495 * 1 2 3 26 26 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47256 * 299.99943 * 1 2 3 28 28 H 1.08002 * 119.96488 * 359.97438 * 4 3 2 29 29 H 1.08004 * 120.03405 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.29247 * 359.97438 * 8 7 6 31 31 H 1.07994 * 119.42700 * 179.97438 * 9 8 7 32 32 H 0.96992 * 120.00122 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.58883 * 359.96188 * 20 7 6 34 34 H 1.09001 * 109.47210 * 89.99403 * 22 21 6 35 35 H 1.09002 * 109.47017 * 209.99637 * 22 21 6 36 36 H 1.09008 * 109.46602 * 329.99181 * 22 21 6 37 37 H 1.09004 * 109.47206 * 270.32228 * 24 23 21 38 38 H 1.09000 * 109.47230 * 30.32332 * 24 23 21 39 39 H 1.09007 * 109.46687 * 150.32373 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 1.2880 2.3743 -0.0005 5 6 1.9110 3.6041 -0.0011 6 6 3.3032 3.6787 -0.0005 7 6 3.9766 5.0003 -0.0017 8 6 4.9909 5.2897 0.9199 9 6 5.5996 6.5332 0.8932 10 7 5.2417 7.4472 0.0180 11 6 4.2799 7.2217 -0.8823 12 6 3.9295 8.2352 -1.8043 13 1 3.0869 8.0959 -2.4655 14 6 4.6714 9.4217 -1.8561 15 7 5.6127 9.6430 -0.9762 16 14 4.3161 10.6883 -3.1825 17 1 3.3813 11.7125 -2.6511 18 1 5.5840 11.3419 -3.5950 19 1 3.7005 10.0174 -4.3555 20 6 3.6115 5.9868 -0.9156 21 6 4.0610 2.5088 -0.0052 22 6 5.5661 2.5852 -0.0113 23 6 3.4322 1.2815 0.0012 24 6 4.2508 0.0163 0.0019 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2095 2.3159 -0.0014 29 1 1.3212 4.5088 -0.0019 30 1 5.2950 4.5499 1.6455 31 1 6.3814 6.7567 1.6040 32 1 6.1268 10.4647 -1.0123 33 1 2.8311 5.8038 -1.6393 34 1 5.9332 2.6023 1.0149 35 1 5.9720 1.7154 -0.5280 36 1 5.8818 3.4931 -0.5254 37 1 4.4490 -0.2889 -1.0256 38 1 5.1950 0.1948 0.5164 39 1 3.7005 -0.7722 0.5154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244002732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:40 Heat of formation + Delta-G solvation = -8.027710 kcal Electronic energy + Delta-G solvation = -21287.760060 eV Core-core repulsion = 18159.335000 eV Total energy + Delta-G solvation = -3128.425060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39874 -40.06558 -38.56091 -35.55172 -34.51215 -33.64816 -31.92968 -30.83538 -28.47540 -28.35195 -27.41052 -26.90828 -24.18150 -23.13507 -21.68238 -21.65893 -19.09408 -18.56001 -17.62286 -17.32800 -16.70521 -16.50870 -16.09109 -15.90828 -15.24751 -15.09372 -14.84141 -14.55192 -14.28866 -14.05326 -13.94862 -13.58957 -13.37149 -13.05975 -12.99167 -12.88784 -12.80203 -12.69499 -12.52858 -12.26921 -12.14337 -11.89448 -11.73386 -11.52038 -11.17358 -10.13792 -9.56679 -9.55491 -9.48760 -8.79721 -8.29610 -6.51684 0.20039 0.35146 0.90873 1.23360 1.39891 1.51792 1.56179 2.22889 2.37572 2.70960 2.87491 3.80421 3.81129 3.89418 3.95789 4.19077 4.23909 4.28632 4.40117 4.41576 4.46691 4.65640 4.69632 4.75252 4.81961 4.84426 4.87467 4.90473 4.92169 4.98980 5.16629 5.19966 5.25547 5.34438 5.45807 5.52232 5.62481 5.68319 5.83502 5.94835 6.15064 6.28777 6.45826 6.73311 6.96254 8.19687 8.45818 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.003928 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.919717 B = 7125.734918 C = 7775.612650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.119 3.881 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.088 4.088 7 C 0.018 3.982 8 C -0.287 4.287 9 C 0.104 3.896 10 N -0.522 5.522 11 C 0.227 3.773 12 C -0.474 4.474 13 H 0.085 0.915 14 C 0.026 3.974 15 N -0.757 5.757 16 Si 0.986 3.014 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.257 1.257 20 C -0.277 4.277 21 C -0.043 4.043 22 C -0.110 4.110 23 C -0.129 4.129 24 C -0.098 4.098 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.061 0.939 28 H 0.152 0.848 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.279 0.721 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 -15.964 1.331 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.074 3.926 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.089 4.089 7 C 0.012 3.988 8 C -0.310 4.310 9 C -0.059 4.059 10 N -0.235 5.235 11 C 0.102 3.898 12 C -0.505 4.505 13 H 0.103 0.897 14 C -0.196 4.196 15 N -0.380 5.380 16 Si 0.806 3.194 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.180 1.180 20 C -0.300 4.300 21 C -0.044 4.044 22 C -0.166 4.166 23 C -0.130 4.130 24 C -0.155 4.155 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.080 0.920 28 H 0.169 0.831 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.540 -15.195 1.384 16.233 hybrid contribution -0.823 0.362 -0.397 0.983 sum -6.363 -14.833 0.987 16.170 Atomic orbital electron populations 1.23344 0.76716 1.05602 1.02054 1.86006 1.23122 1.25989 1.88582 1.18927 0.91864 0.84616 0.97193 1.21270 1.00965 0.91224 1.09070 1.21069 0.93303 0.97876 0.97851 1.18820 0.93460 0.91831 1.04757 1.18779 0.94254 0.91687 0.94095 1.21592 1.04418 0.99522 1.05455 1.22897 0.97169 0.90031 0.95817 1.68668 1.16713 1.32263 1.05905 1.18924 0.88527 0.91504 0.90810 1.19952 1.13639 1.00074 1.16870 0.89668 1.26973 0.93665 1.00551 0.98393 1.70228 1.14419 1.23303 1.30007 0.85148 0.78923 0.77290 0.78046 1.18628 1.19118 1.18021 1.21897 1.07114 0.95911 1.05050 1.19780 0.96799 0.90612 0.97170 1.20884 0.89911 1.02701 1.03084 1.19264 0.91125 0.95934 1.06671 1.20629 0.99093 0.92941 1.02793 0.92124 0.85856 0.91992 0.83055 0.86208 0.85953 0.84343 0.91048 0.88211 0.89823 0.89534 0.93036 0.90828 0.90325 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -7.46 9.52 -91.86 -0.87 -8.34 16 3 C 0.12 3.32 6.66 22.56 0.15 3.47 16 4 C -0.21 -5.80 9.02 22.33 0.20 -5.60 16 5 C -0.08 -2.85 9.53 22.47 0.21 -2.63 16 6 C -0.09 -3.39 5.51 -20.03 -0.11 -3.50 16 7 C 0.02 0.83 4.71 -19.88 -0.09 0.73 16 8 C -0.29 -12.73 8.04 22.77 0.18 -12.55 16 9 C 0.10 5.14 11.17 84.80 0.95 6.09 16 10 N -0.52 -29.94 7.87 -189.38 -1.49 -31.43 16 11 C 0.23 13.03 6.55 40.19 0.26 13.30 16 12 C -0.47 -26.61 9.14 23.49 0.21 -26.40 16 13 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 14 C 0.03 1.34 5.49 85.29 0.47 1.81 16 15 N -0.76 -41.87 11.49 21.84 0.25 -41.62 16 16 Si 0.99 38.99 29.56 68.60 2.03 41.02 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 20 C -0.28 -14.23 9.36 23.08 0.22 -14.02 16 21 C -0.04 -1.43 5.88 -19.66 -0.12 -1.55 16 22 C -0.11 -3.24 7.65 71.24 0.55 -2.69 16 23 C -0.13 -3.72 5.89 -19.80 -0.12 -3.84 16 24 C -0.10 -2.14 8.95 71.24 0.64 -1.50 16 25 H 0.06 0.82 7.65 -2.39 -0.02 0.80 16 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 28 H 0.15 3.26 6.28 -2.91 -0.02 3.25 16 29 H 0.12 4.13 8.05 -2.91 -0.02 4.11 16 30 H 0.12 4.69 6.96 -2.91 -0.02 4.67 16 31 H 0.14 6.00 8.06 -2.91 -0.02 5.97 16 32 H 0.28 13.87 8.29 -92.71 -0.77 13.10 16 33 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 34 H 0.08 2.23 7.55 -2.39 -0.02 2.21 16 35 H 0.09 2.07 6.72 -2.39 -0.02 2.05 16 36 H 0.05 1.82 6.46 -2.38 -0.02 1.81 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.51 6.72 -2.39 -0.02 1.49 16 39 H 0.07 1.49 7.52 -2.38 -0.02 1.47 16 Total: -1.00 -67.58 323.24 5.69 -61.89 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.06 Total: 26.00 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 4.72 Total: -47.51 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.24 Total: -73.05 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.87 Total: -8.34 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -67.58 5.69 -61.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244002732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.858 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds