Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35787 * 116.99970 * 2 1 4 4 C 1.39031 * 119.90469 * 359.97438 * 3 2 1 5 5 C 1.37711 * 120.09274 * 179.71708 * 4 3 2 6 6 C 1.39815 * 119.90317 * 0.55993 * 5 4 3 7 7 C 1.47697 * 120.08878 * 179.73986 * 6 5 4 8 8 C 1.39762 * 120.65585 * 64.75239 * 7 6 5 9 9 C 1.38334 * 118.47068 * 179.97438 * 8 7 6 10 10 C 1.39079 * 119.74296 * 0.02562 * 9 8 7 11 11 N 1.31275 * 121.35171 * 359.97438 * 10 9 8 12 12 C 1.33713 * 121.63897 * 0.02562 * 11 10 9 13 13 C 1.40752 * 119.94407 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99749 * 176.19390 * 13 12 11 15 15 C 1.40126 * 120.00197 * 356.19752 * 13 12 11 16 16 N 1.30706 * 119.99603 * 6.98718 * 15 13 12 17 17 Si 1.86799 * 119.99804 * 186.98819 * 15 13 12 18 18 H 1.48498 * 109.47056 * 94.97823 * 17 15 13 19 19 H 1.48499 * 109.46835 * 214.97612 * 17 15 13 20 20 H 1.48498 * 109.47248 * 334.97397 * 17 15 13 21 21 C 1.39776 * 119.81402 * 359.46780 * 6 5 4 22 22 C 1.50691 * 120.04972 * 180.27578 * 21 6 5 23 23 C 1.37753 * 119.90187 * 0.25021 * 21 6 5 24 24 C 1.50696 * 119.95214 * 180.02562 * 23 21 6 25 25 H 1.09000 * 109.47530 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47253 * 299.99997 * 1 2 3 27 27 H 1.09004 * 109.47331 * 59.99698 * 1 2 3 28 28 H 1.08000 * 119.94992 * 0.02562 * 4 3 2 29 29 H 1.08008 * 120.04435 * 180.27748 * 5 4 3 30 30 H 1.07993 * 120.76299 * 359.94625 * 8 7 6 31 31 H 1.07999 * 120.12779 * 180.02562 * 9 8 7 32 32 H 1.08004 * 119.32459 * 180.26609 * 10 9 8 33 33 H 0.97006 * 119.99375 * 179.97438 * 16 15 13 34 34 H 1.09008 * 109.47479 * 89.99387 * 22 21 6 35 35 H 1.08992 * 109.47530 * 209.99947 * 22 21 6 36 36 H 1.09003 * 109.47541 * 330.00129 * 22 21 6 37 37 H 1.08996 * 109.47452 * 89.99784 * 24 23 21 38 38 H 1.09000 * 109.46970 * 210.00149 * 24 23 21 39 39 H 1.09003 * 109.47079 * 330.00173 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2863 2.3746 -0.0005 5 6 1.9074 3.6037 0.0053 6 6 3.3035 3.6791 0.0000 7 6 3.9739 4.9952 0.0005 8 6 3.8447 5.8603 1.0905 9 6 4.4925 7.0817 1.0434 10 6 5.2488 7.4190 -0.0741 11 7 5.3643 6.5997 -1.0932 12 6 4.7618 5.4061 -1.1055 13 6 4.9094 4.5559 -2.2175 14 1 4.4745 3.5674 -2.2030 15 6 5.6208 4.9920 -3.3433 16 7 6.2620 6.1305 -3.3105 17 14 5.6526 3.9461 -4.8907 18 1 4.5914 4.4072 -5.8216 19 1 6.9779 4.0750 -5.5480 20 1 5.4137 2.5249 -4.5327 21 6 4.0629 2.5056 0.0000 22 6 5.5679 2.5808 0.0006 23 6 3.4334 1.2803 0.0000 24 6 4.2510 0.0145 0.0006 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 0.2079 2.3154 -0.0005 29 1 1.3169 4.5080 0.0094 30 1 3.2525 5.5819 1.9495 31 1 4.4113 7.7707 1.8711 32 1 5.7552 8.3725 -0.1019 33 1 6.7547 6.4321 -4.0898 34 1 5.9305 2.5988 1.0284 35 1 5.9754 1.7102 -0.5133 36 1 5.8867 3.4879 -0.5129 37 1 4.4478 -0.2906 1.0283 38 1 3.7007 -0.7737 -0.5133 39 1 5.1960 0.1920 -0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244002737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = 11.985760 kcal Electronic energy + Delta-G solvation = -22125.852383 eV Core-core repulsion = 18998.295173 eV Total energy + Delta-G solvation = -3127.557210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90250 -38.40028 -36.92070 -33.74689 -32.94501 -31.93664 -30.37972 -29.02213 -27.34136 -26.92126 -25.53726 -25.31467 -22.41920 -21.35298 -20.18029 -19.70628 -17.50339 -17.19322 -16.11026 -15.68363 -15.49491 -15.09847 -14.36456 -14.19727 -13.92976 -13.45041 -13.37687 -12.86569 -12.56772 -12.42144 -12.29357 -12.01991 -11.87344 -11.66956 -11.59998 -11.31996 -11.22365 -11.07051 -11.00149 -10.58433 -10.48459 -10.35822 -10.15396 -9.81979 -9.38354 -8.26827 -8.02354 -7.80149 -7.57370 -7.10151 -6.47217 -4.55186 1.93620 1.96075 2.70952 2.97540 3.06629 3.11256 3.19946 3.58998 3.91039 4.32393 4.69233 5.12789 5.24336 5.25181 5.38475 5.51577 5.59958 5.76235 5.81754 5.86218 5.99516 6.02901 6.09033 6.10369 6.26885 6.35779 6.43542 6.46660 6.53030 6.65958 6.83316 6.87862 6.93159 7.09018 7.14990 7.30882 7.37036 7.42636 7.60120 7.73014 7.87543 8.01982 8.22770 8.59143 8.88675 10.04787 10.22993 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.006878 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.686882 B = 4069.779587 C = 5155.796564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.102 3.898 4 C -0.211 4.211 5 C -0.088 4.088 6 C -0.006 4.006 7 C -0.226 4.226 8 C -0.037 4.037 9 C -0.321 4.321 10 C 0.129 3.871 11 N -0.484 5.484 12 C 0.269 3.731 13 C -0.416 4.416 14 H 0.091 0.909 15 C 0.070 3.930 16 N -0.708 5.708 17 Si 0.900 3.100 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.033 4.033 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.102 4.102 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.274 0.726 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -8.146 3.716 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.057 3.943 4 C -0.230 4.230 5 C -0.106 4.106 6 C -0.007 4.007 7 C -0.231 4.231 8 C -0.062 4.062 9 C -0.344 4.344 10 C -0.039 4.039 11 N -0.196 5.196 12 C 0.146 3.854 13 C -0.446 4.446 14 H 0.109 0.891 15 C -0.157 4.157 16 N -0.329 5.329 17 Si 0.723 3.277 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.034 4.034 22 C -0.182 4.182 23 C -0.123 4.123 24 C -0.158 4.158 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.075 -7.997 2.821 9.883 hybrid contribution -1.008 -0.322 0.112 1.064 sum -6.083 -8.319 2.933 10.715 Atomic orbital electron populations 1.22926 0.79484 1.02980 1.01072 1.85963 1.20411 1.27589 1.89496 1.18752 0.91589 0.83595 1.00320 1.20947 0.98956 0.92416 1.10652 1.21036 0.94156 0.96261 0.99185 1.18497 0.91611 0.92425 0.98160 1.19262 1.09931 0.95115 0.98779 1.20857 0.96307 0.93258 0.95745 1.21187 1.11679 0.99585 1.01923 1.22571 0.93936 0.97606 0.89790 1.68764 1.22537 1.03702 1.24556 1.18491 0.87203 0.89284 0.90469 1.19661 1.27045 1.00871 0.97071 0.89145 1.26114 0.94100 0.95110 1.00357 1.70123 1.17471 1.16541 1.28730 0.86412 0.78509 0.81448 0.81297 1.19380 1.19969 1.18142 1.19738 0.96235 0.90601 0.96777 1.21118 0.90768 1.04877 1.01484 1.18927 0.90183 0.95523 1.07637 1.20603 0.99188 0.94517 1.01516 0.88990 0.93138 0.93036 0.86492 0.86522 0.88784 0.88862 0.86526 0.91484 0.92433 0.92243 0.87793 0.92152 0.91965 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.95 9.52 -19.07 -0.18 -5.13 16 3 C 0.10 1.78 6.67 -39.01 -0.26 1.52 16 4 C -0.21 -3.61 9.02 -39.48 -0.36 -3.97 16 5 C -0.09 -1.70 9.74 -39.18 -0.38 -2.08 16 6 C -0.01 -0.13 4.50 -104.87 -0.47 -0.60 16 7 C -0.23 -5.33 4.66 -104.07 -0.49 -5.82 16 8 C -0.04 -0.83 9.88 -38.98 -0.39 -1.22 16 9 C -0.32 -7.06 10.10 -39.23 -0.40 -7.46 16 10 C 0.13 3.06 11.17 -17.48 -0.20 2.86 16 11 N -0.48 -12.95 7.87 -10.90 -0.09 -13.04 16 12 C 0.27 7.02 5.53 -84.71 -0.47 6.55 16 13 C -0.42 -10.67 6.86 -37.92 -0.26 -10.93 16 14 H 0.09 2.27 5.76 -52.48 -0.30 1.97 16 15 C 0.07 1.72 5.49 -17.32 -0.10 1.63 16 16 N -0.71 -18.28 11.49 55.56 0.64 -17.64 16 17 Si 0.90 18.48 29.57 -169.99 -5.03 13.46 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 21 C -0.03 -0.67 4.84 -104.23 -0.50 -1.17 16 22 C -0.13 -2.46 8.70 36.00 0.31 -2.15 16 23 C -0.12 -2.24 5.89 -104.53 -0.62 -2.86 16 24 C -0.10 -1.56 9.37 36.00 0.34 -1.23 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.51 7.65 -51.92 -0.40 0.11 16 27 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 28 H 0.12 1.65 6.28 -52.49 -0.33 1.32 16 29 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 30 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 33 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 34 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.06 1.03 5.94 -51.93 -0.31 0.72 16 36 H 0.10 2.36 4.34 -51.93 -0.23 2.13 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.91 7.52 -51.93 -0.39 0.52 16 39 H 0.07 1.00 5.94 -51.93 -0.31 0.69 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -28.69 318.03 -7.85 -36.54 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.75 Total: 6.60 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -3.23 Total: -25.58 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.55 Total: -30.68 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.18 Total: -5.13 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.69 -7.85 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244002737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.524 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds