Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35787 * 116.99970 * 2 1 4 4 C 1.39031 * 119.90469 * 359.97438 * 3 2 1 5 5 C 1.37711 * 120.09274 * 179.71708 * 4 3 2 6 6 C 1.39815 * 119.90317 * 0.55993 * 5 4 3 7 7 C 1.47697 * 120.08878 * 179.73986 * 6 5 4 8 8 C 1.39762 * 120.65585 * 64.75239 * 7 6 5 9 9 C 1.38334 * 118.47068 * 179.97438 * 8 7 6 10 10 C 1.39079 * 119.74296 * 0.02562 * 9 8 7 11 11 N 1.31275 * 121.35171 * 359.97438 * 10 9 8 12 12 C 1.33713 * 121.63897 * 0.02562 * 11 10 9 13 13 C 1.40752 * 119.94407 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99749 * 176.19390 * 13 12 11 15 15 C 1.40126 * 120.00197 * 356.19752 * 13 12 11 16 16 N 1.30706 * 119.99603 * 6.98718 * 15 13 12 17 17 Si 1.86799 * 119.99804 * 186.98819 * 15 13 12 18 18 H 1.48498 * 109.47056 * 94.97823 * 17 15 13 19 19 H 1.48499 * 109.46835 * 214.97612 * 17 15 13 20 20 H 1.48498 * 109.47248 * 334.97397 * 17 15 13 21 21 C 1.39776 * 119.81402 * 359.46780 * 6 5 4 22 22 C 1.50691 * 120.04972 * 180.27578 * 21 6 5 23 23 C 1.37753 * 119.90187 * 0.25021 * 21 6 5 24 24 C 1.50696 * 119.95214 * 180.02562 * 23 21 6 25 25 H 1.09000 * 109.47530 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47253 * 299.99997 * 1 2 3 27 27 H 1.09004 * 109.47331 * 59.99698 * 1 2 3 28 28 H 1.08000 * 119.94992 * 0.02562 * 4 3 2 29 29 H 1.08008 * 120.04435 * 180.27748 * 5 4 3 30 30 H 1.07993 * 120.76299 * 359.94625 * 8 7 6 31 31 H 1.07999 * 120.12779 * 180.02562 * 9 8 7 32 32 H 1.08004 * 119.32459 * 180.26609 * 10 9 8 33 33 H 0.97006 * 119.99375 * 179.97438 * 16 15 13 34 34 H 1.09008 * 109.47479 * 89.99387 * 22 21 6 35 35 H 1.08992 * 109.47530 * 209.99947 * 22 21 6 36 36 H 1.09003 * 109.47541 * 330.00129 * 22 21 6 37 37 H 1.08996 * 109.47452 * 89.99784 * 24 23 21 38 38 H 1.09000 * 109.46970 * 210.00149 * 24 23 21 39 39 H 1.09003 * 109.47079 * 330.00173 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2863 2.3746 -0.0005 5 6 1.9074 3.6037 0.0053 6 6 3.3035 3.6791 0.0000 7 6 3.9739 4.9952 0.0005 8 6 3.8447 5.8603 1.0905 9 6 4.4925 7.0817 1.0434 10 6 5.2488 7.4190 -0.0741 11 7 5.3643 6.5997 -1.0932 12 6 4.7618 5.4061 -1.1055 13 6 4.9094 4.5559 -2.2175 14 1 4.4745 3.5674 -2.2030 15 6 5.6208 4.9920 -3.3433 16 7 6.2620 6.1305 -3.3105 17 14 5.6526 3.9461 -4.8907 18 1 4.5914 4.4072 -5.8216 19 1 6.9779 4.0750 -5.5480 20 1 5.4137 2.5249 -4.5327 21 6 4.0629 2.5056 0.0000 22 6 5.5679 2.5808 0.0006 23 6 3.4334 1.2803 0.0000 24 6 4.2510 0.0145 0.0006 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 0.2079 2.3154 -0.0005 29 1 1.3169 4.5080 0.0094 30 1 3.2525 5.5819 1.9495 31 1 4.4113 7.7707 1.8711 32 1 5.7552 8.3725 -0.1019 33 1 6.7547 6.4321 -4.0898 34 1 5.9305 2.5988 1.0284 35 1 5.9754 1.7102 -0.5133 36 1 5.8867 3.4879 -0.5129 37 1 4.4478 -0.2906 1.0283 38 1 3.7007 -0.7737 -0.5133 39 1 5.1960 0.1920 -0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244002737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = -2.477132 kcal Electronic energy + Delta-G solvation = -22126.479541 eV Core-core repulsion = 18998.295173 eV Total energy + Delta-G solvation = -3128.184369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27580 -40.03146 -38.34307 -35.56289 -34.36829 -33.48745 -32.18404 -30.57659 -28.50722 -28.37801 -27.07592 -26.81377 -24.05723 -23.15557 -21.54886 -21.25586 -19.34811 -18.44636 -17.61368 -17.25519 -16.67505 -16.60259 -16.05816 -15.98076 -15.19740 -14.84604 -14.72650 -14.47052 -14.13155 -13.87958 -13.83368 -13.49418 -13.36308 -13.10434 -12.87144 -12.83126 -12.73797 -12.71174 -12.34824 -12.31995 -11.98341 -11.83518 -11.54634 -11.42869 -11.17011 -10.06698 -9.59500 -9.43974 -9.36069 -8.64988 -8.27495 -6.42916 0.46211 0.51316 0.95853 1.21448 1.38229 1.50904 1.52112 2.20893 2.47745 2.83726 2.89223 3.89533 3.96197 4.04751 4.11830 4.29315 4.35228 4.39387 4.44710 4.47217 4.56061 4.64243 4.75198 4.78110 4.80718 4.87733 4.92123 4.98837 5.02817 5.09575 5.22313 5.29054 5.39191 5.48408 5.58187 5.68208 5.72096 5.87061 6.03155 6.04904 6.21710 6.35220 6.58788 6.75411 7.03057 8.21364 8.43567 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.006878 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.686882 B = 4069.779587 C = 5155.796564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.106 3.894 4 C -0.206 4.206 5 C -0.096 4.096 6 C -0.039 4.039 7 C -0.223 4.223 8 C -0.050 4.050 9 C -0.311 4.311 10 C 0.105 3.895 11 N -0.522 5.522 12 C 0.244 3.756 13 C -0.437 4.437 14 H 0.087 0.913 15 C 0.029 3.971 16 N -0.748 5.748 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.264 1.264 20 H -0.255 1.255 21 C -0.047 4.047 22 C -0.120 4.120 23 C -0.134 4.134 24 C -0.098 4.098 25 H 0.121 0.879 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.149 0.851 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.279 0.721 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 -10.136 4.165 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.061 3.939 4 C -0.224 4.224 5 C -0.115 4.115 6 C -0.040 4.040 7 C -0.228 4.228 8 C -0.074 4.074 9 C -0.334 4.334 10 C -0.060 4.060 11 N -0.234 5.234 12 C 0.120 3.880 13 C -0.468 4.468 14 H 0.105 0.895 15 C -0.194 4.194 16 N -0.370 5.370 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.189 1.189 20 H -0.179 1.179 21 C -0.047 4.047 22 C -0.176 4.176 23 C -0.134 4.134 24 C -0.154 4.154 25 H 0.140 0.860 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.167 0.833 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.691 -9.978 3.296 12.458 hybrid contribution -0.647 0.240 0.123 0.701 sum -7.338 -9.738 3.420 12.663 Atomic orbital electron populations 1.23301 0.76951 1.05360 1.01921 1.85965 1.22960 1.26289 1.88967 1.18872 0.91595 0.84578 0.98811 1.21218 1.00585 0.91372 1.09254 1.21128 0.93397 0.97493 0.99434 1.18552 0.92703 0.91826 1.00891 1.19534 1.08815 0.96300 0.98148 1.21210 0.96668 0.93291 0.96246 1.21509 1.10024 0.99920 1.01973 1.22972 0.94809 0.98188 0.90073 1.68689 1.23844 1.04673 1.26227 1.18843 0.88048 0.89496 0.91639 1.19753 1.28192 1.00892 0.97942 0.89525 1.26890 0.93351 0.96124 1.02992 1.70208 1.18695 1.18238 1.29838 0.85411 0.78813 0.79646 0.77379 1.19200 1.18861 1.17881 1.19788 0.96232 0.91106 0.97566 1.21003 0.91109 1.03867 1.01634 1.19232 0.91251 0.95844 1.07117 1.20624 0.98920 0.93315 1.02581 0.86044 0.91977 0.92385 0.83312 0.86195 0.86417 0.85816 0.84752 0.91044 0.91740 0.90516 0.91230 0.90715 0.91152 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.03 9.52 -91.16 -0.87 -9.90 16 3 C 0.11 3.48 6.67 22.64 0.15 3.63 16 4 C -0.21 -6.56 9.02 22.34 0.20 -6.36 16 5 C -0.10 -3.62 9.74 22.53 0.22 -3.40 16 6 C -0.04 -1.67 4.50 -20.02 -0.09 -1.76 16 7 C -0.22 -10.73 4.66 -19.51 -0.09 -10.82 16 8 C -0.05 -2.21 9.88 22.66 0.22 -1.99 16 9 C -0.31 -13.56 10.10 22.49 0.23 -13.33 16 10 C 0.11 5.08 11.17 84.98 0.95 6.03 16 11 N -0.52 -28.94 7.87 -188.41 -1.48 -30.42 16 12 C 0.24 13.18 5.53 40.37 0.22 13.40 16 13 C -0.44 -23.20 6.86 23.34 0.16 -23.04 16 14 H 0.09 4.50 5.76 -2.91 -0.02 4.49 16 15 C 0.03 1.48 5.49 85.32 0.47 1.95 16 16 N -0.75 -40.01 11.49 21.86 0.25 -39.76 16 17 Si 0.97 38.58 29.57 68.60 2.03 40.61 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 C -0.05 -1.87 4.84 -19.61 -0.09 -1.96 16 22 C -0.12 -4.73 8.70 71.23 0.62 -4.11 16 23 C -0.13 -4.71 5.89 -19.80 -0.12 -4.82 16 24 C -0.10 -2.80 9.37 71.23 0.67 -2.13 16 25 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 0.99 7.65 -2.38 -0.02 0.98 16 27 H 0.06 0.99 7.65 -2.39 -0.02 0.97 16 28 H 0.15 3.68 6.28 -2.91 -0.02 3.66 16 29 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.14 5.75 8.06 -2.91 -0.02 5.73 16 33 H 0.28 13.52 8.29 -92.70 -0.77 12.75 16 34 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.08 2.65 5.94 -2.39 -0.01 2.63 16 36 H 0.07 3.28 4.34 -2.39 -0.01 3.26 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.88 7.52 -2.39 -0.02 1.86 16 39 H 0.07 1.95 5.94 -2.39 -0.01 1.94 16 Total: -1.00 -63.55 318.03 5.83 -57.72 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 1.07 Total: 29.01 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 4.83 Total: -47.26 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -1.23 Total: -70.18 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.87 Total: -9.90 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -63.55 5.83 -57.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244002737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.242 kcal (2) G-P(sol) polarization free energy of solvation -63.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds