Wall clock time and date at job start Tue Mar 31 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35761 * 117.00229 * 2 1 4 4 C 1.38566 * 120.14138 * 270.27492 * 3 2 1 5 5 C 1.50697 * 119.95618 * 359.97438 * 4 3 2 6 6 C 1.38187 * 120.08791 * 180.27568 * 4 3 2 7 7 C 1.38542 * 120.38832 * 359.70187 * 6 4 3 8 8 C 1.50700 * 119.85426 * 180.02562 * 7 6 4 9 9 C 1.37830 * 120.28991 * 0.02562 * 7 6 4 10 10 C 1.39712 * 119.90194 * 359.97438 * 9 7 6 11 11 C 1.47662 * 120.19117 * 179.97438 * 10 9 7 12 12 C 1.39763 * 120.65331 * 65.00776 * 11 10 9 13 13 C 1.38336 * 118.46936 * 180.02562 * 12 11 10 14 14 C 1.39085 * 119.74102 * 359.97438 * 13 12 11 15 15 N 1.31275 * 121.35519 * 0.02562 * 14 13 12 16 16 C 1.33709 * 121.64058 * 359.97438 * 15 14 13 17 17 C 1.40746 * 119.95057 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00331 * 180.02562 * 17 16 15 19 19 C 1.40135 * 119.99798 * 359.97438 * 17 16 15 20 20 N 1.30709 * 120.00049 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00256 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47044 * 60.00051 * 21 19 17 23 23 H 1.48499 * 109.47566 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46891 * 300.00274 * 21 19 17 25 25 H 1.08999 * 109.46700 * 300.00481 * 1 2 3 26 26 H 1.08998 * 109.46663 * 60.00280 * 1 2 3 27 27 H 1.09000 * 109.47300 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47301 * 270.27870 * 5 4 3 29 29 H 1.09000 * 109.47118 * 30.27394 * 5 4 3 30 30 H 1.08992 * 109.47242 * 150.27789 * 5 4 3 31 31 H 1.08001 * 119.80215 * 179.71834 * 6 4 3 32 32 H 1.08996 * 109.47035 * 269.97213 * 8 7 6 33 33 H 1.08999 * 109.47327 * 29.97433 * 8 7 6 34 34 H 1.09007 * 109.46876 * 149.97229 * 8 7 6 35 35 H 1.08004 * 120.04925 * 179.97438 * 9 7 6 36 36 H 1.07995 * 120.76918 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.13397 * 179.97438 * 13 12 11 38 38 H 1.08002 * 119.32636 * 179.72084 * 14 13 12 39 39 H 0.96998 * 119.99940 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.3562 1.8322 -1.1983 5 6 2.0100 1.1654 -2.5046 6 6 2.9887 3.0608 -1.1970 7 6 3.3111 3.6818 -0.0013 8 6 4.0004 5.0219 -0.0140 9 6 3.0043 3.0794 1.1998 10 6 2.3649 1.8373 1.2127 11 6 2.0337 1.1858 2.4958 12 6 1.1077 1.7624 3.3695 13 6 0.8316 1.1138 4.5598 14 6 1.4730 -0.0838 4.8579 15 7 2.3414 -0.6178 4.0308 16 6 2.6492 -0.0378 2.8660 17 6 3.5851 -0.6419 2.0058 18 1 3.8346 -0.1740 1.0650 19 6 4.1941 -1.8502 2.3707 20 7 3.8926 -2.4163 3.5095 21 14 5.4369 -2.6517 1.2294 22 1 6.5778 -1.7264 1.0116 23 1 5.9315 -3.9108 1.8419 24 1 4.7899 -2.9547 -0.0724 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.8404 0.5345 -2.8218 29 1 1.1176 0.5531 -2.3748 30 1 1.8217 1.9261 -3.2621 31 1 3.2329 3.5398 -2.1337 32 1 5.0804 4.8749 -0.0188 33 1 3.7048 5.5741 -0.9061 34 1 3.7144 5.5860 0.8739 35 1 3.2578 3.5668 2.1296 36 1 0.6195 2.6933 3.1216 37 1 0.1208 1.5356 5.2549 38 1 1.2559 -0.5822 5.7911 39 1 4.3144 -3.2524 3.7622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244117204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:20 Heat of formation + Delta-G solvation = 10.831281 kcal Electronic energy + Delta-G solvation = -22420.236976 eV Core-core repulsion = 19292.629703 eV Total energy + Delta-G solvation = -3127.607272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.66550 -37.81671 -36.80706 -33.61934 -32.85993 -32.23257 -30.26307 -28.95724 -27.16334 -26.83300 -25.58819 -24.89366 -22.69633 -21.33974 -20.12123 -19.71997 -17.43453 -16.99743 -15.97518 -15.56318 -14.84751 -14.80521 -14.28626 -14.04942 -13.73316 -13.52074 -13.35191 -13.01832 -12.78620 -12.57539 -12.23537 -12.12129 -11.96139 -11.72935 -11.55036 -11.28682 -11.14657 -11.04886 -10.90049 -10.67992 -10.53759 -10.34266 -9.88870 -9.36855 -9.19659 -8.34337 -8.03223 -7.78651 -7.54065 -7.30454 -6.40251 -4.45544 1.76970 1.87581 2.77260 3.01110 3.09726 3.14344 3.27160 3.97855 4.05375 4.60422 4.78011 5.15833 5.30044 5.37889 5.61692 5.63591 5.70656 5.81707 5.87286 5.90442 5.93759 5.98625 6.06730 6.08831 6.10182 6.13762 6.16037 6.28800 6.48847 6.55725 6.68654 6.87859 6.94770 7.01174 7.15058 7.21036 7.34299 7.41281 7.62218 7.75221 8.07245 8.29336 8.34153 8.66286 8.98253 10.11545 10.30340 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.008013 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.439286 B = 3493.650625 C = 4264.704980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.098 3.902 4 C -0.109 4.109 5 C -0.104 4.104 6 C -0.132 4.132 7 C -0.095 4.095 8 C -0.107 4.107 9 C -0.117 4.117 10 C 0.017 3.983 11 C -0.235 4.235 12 C -0.036 4.036 13 C -0.328 4.328 14 C 0.132 3.868 15 N -0.483 5.483 16 C 0.276 3.724 17 C -0.394 4.394 18 H 0.086 0.914 19 C 0.068 3.932 20 N -0.711 5.711 21 Si 0.903 3.097 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.261 1.261 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 7.075 -7.744 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.226 6.226 3 C 0.054 3.946 4 C -0.109 4.109 5 C -0.161 4.161 6 C -0.151 4.151 7 C -0.095 4.095 8 C -0.164 4.164 9 C -0.136 4.136 10 C 0.016 3.984 11 C -0.240 4.240 12 C -0.060 4.060 13 C -0.351 4.351 14 C -0.037 4.037 15 N -0.194 5.194 16 C 0.153 3.847 17 C -0.424 4.424 18 H 0.104 0.896 19 C -0.158 4.158 20 N -0.331 5.331 21 Si 0.727 3.273 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.186 1.186 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.758 5.885 -7.442 9.649 hybrid contribution -0.092 0.591 -0.524 0.795 sum -1.849 6.477 -7.966 10.432 Atomic orbital electron populations 1.22807 0.80669 1.02286 0.99535 1.86114 1.18223 1.24235 1.93983 1.18664 0.98506 0.86521 0.90920 1.20034 1.01171 0.94974 0.94768 1.20623 1.01976 0.99855 0.93613 1.20573 1.02176 0.95274 0.97043 1.19708 0.99931 0.96767 0.93107 1.20711 0.99960 0.93719 1.01998 1.21079 1.00024 0.95470 0.96983 1.19068 0.94766 0.91875 0.92685 1.19163 1.08099 1.01030 0.95669 1.20811 0.95247 0.96644 0.93320 1.21125 1.11168 1.02284 1.00517 1.22576 0.91991 0.91747 0.97395 1.68773 1.15027 1.32009 1.03603 1.18424 0.90240 0.86801 0.89241 1.19541 1.16679 1.03294 1.02862 0.89578 1.26139 0.97098 0.97272 0.95255 1.70120 1.31546 1.13397 1.18056 0.86441 0.80865 0.78728 0.81275 1.18866 1.20222 1.18582 0.93815 0.94867 0.89714 0.91391 0.91738 0.92354 0.86776 0.91611 0.92167 0.91941 0.86415 0.89001 0.88955 0.86604 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.76 101.05 1.09 1.82 16 2 O -0.31 -6.63 8.15 -18.99 -0.15 -6.79 16 3 C 0.10 2.02 4.46 -38.71 -0.17 1.85 16 4 C -0.11 -1.92 5.89 -104.52 -0.62 -2.54 16 5 C -0.10 -1.50 9.78 36.00 0.35 -1.15 16 6 C -0.13 -2.12 9.34 -39.49 -0.37 -2.49 16 7 C -0.10 -1.56 5.88 -104.66 -0.61 -2.17 16 8 C -0.11 -1.34 10.00 36.01 0.36 -0.97 16 9 C -0.12 -2.25 9.39 -39.18 -0.37 -2.62 16 10 C 0.02 0.38 4.48 -104.75 -0.47 -0.09 16 11 C -0.23 -5.70 5.00 -104.08 -0.52 -6.22 16 12 C -0.04 -0.81 9.88 -38.98 -0.39 -1.20 16 13 C -0.33 -7.37 10.10 -39.23 -0.40 -7.77 16 14 C 0.13 3.22 11.17 -17.48 -0.20 3.02 16 15 N -0.48 -13.37 7.85 -10.90 -0.09 -13.45 16 16 C 0.28 7.53 6.40 -84.71 -0.54 6.99 16 17 C -0.39 -10.72 7.91 -37.92 -0.30 -11.02 16 18 H 0.09 2.33 5.99 -52.49 -0.31 2.01 16 19 C 0.07 1.78 5.50 -17.32 -0.10 1.68 16 20 N -0.71 -19.08 11.46 55.56 0.64 -18.44 16 21 Si 0.90 19.38 29.56 -169.99 -5.03 14.35 16 22 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.49 7.23 -51.93 -0.38 0.11 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.92 6.29 -51.93 -0.33 0.59 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.06 0.73 8.08 -51.92 -0.42 0.31 16 35 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.27 6.67 8.29 -40.82 -0.34 6.34 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -30.05 329.19 -8.13 -38.18 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.22 Total: 4.07 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.24 Total: -22.88 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.55 Total: -31.89 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.15 Total: -6.79 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.05 -8.13 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244117204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.012 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds