Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35819 * 117.00123 * 2 1 4 4 C 1.38608 * 120.12577 * 93.88484 * 3 2 1 5 5 C 1.50701 * 119.96787 * 0.05001 * 4 3 2 6 6 C 1.38152 * 120.06523 * 180.02562 * 4 3 2 7 7 C 1.38408 * 120.31156 * 359.97438 * 6 4 3 8 8 C 1.50701 * 119.87982 * 179.97438 * 7 6 4 9 9 C 1.37980 * 120.24221 * 359.76430 * 7 6 4 10 10 C 1.39331 * 119.93429 * 0.51065 * 9 7 6 11 11 C 1.48285 * 120.15739 * 179.74695 * 10 9 7 12 12 C 1.40073 * 120.83178 * 124.11577 * 11 10 9 13 13 C 1.38474 * 119.42645 * 179.97438 * 12 11 10 14 14 N 1.31500 * 121.14670 * 359.97438 * 13 12 11 15 15 C 1.33654 * 121.80436 * 359.97438 * 14 13 12 16 16 C 1.41431 * 119.77903 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00068 * 189.06805 * 16 15 14 18 18 C 1.40031 * 119.99613 * 9.06208 * 16 15 14 19 19 N 1.30747 * 119.99773 * 195.37835 * 18 16 15 20 20 Si 1.86794 * 120.00310 * 15.37944 * 18 16 15 21 21 H 1.48503 * 109.46909 * 269.99891 * 20 18 16 22 22 H 1.48502 * 109.46901 * 29.99413 * 20 18 16 23 23 H 1.48499 * 109.47258 * 149.99688 * 20 18 16 24 24 C 1.39373 * 120.82340 * 304.34677 * 11 10 9 25 25 H 1.08999 * 109.46840 * 65.05299 * 1 2 3 26 26 H 1.08999 * 109.47216 * 185.05261 * 1 2 3 27 27 H 1.08999 * 109.47285 * 305.05529 * 1 2 3 28 28 H 1.08998 * 109.46962 * 89.99144 * 5 4 3 29 29 H 1.09002 * 109.47264 * 209.99878 * 5 4 3 30 30 H 1.09002 * 109.46913 * 329.99680 * 5 4 3 31 31 H 1.07997 * 119.84847 * 180.02562 * 6 4 3 32 32 H 1.09011 * 109.46893 * 90.00122 * 8 7 6 33 33 H 1.08997 * 109.47247 * 209.99864 * 8 7 6 34 34 H 1.08997 * 109.47070 * 329.99963 * 8 7 6 35 35 H 1.08011 * 120.03340 * 180.25890 * 9 7 6 36 36 H 1.08003 * 120.28590 * 359.97438 * 12 11 10 37 37 H 1.07992 * 119.42639 * 179.97438 * 13 12 11 38 38 H 0.97004 * 119.99932 * 354.92828 * 19 18 16 39 39 H 1.08000 * 120.58221 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 2.4339 1.7931 1.1961 5 6 2.1726 1.0829 2.4994 6 6 3.0606 3.0243 1.1947 7 6 3.3049 3.6824 0.0018 8 6 3.9887 5.0253 0.0116 9 6 2.9288 3.1114 -1.1966 10 6 2.2909 1.8727 -1.2067 11 6 1.8795 1.2570 -2.4914 12 6 2.3155 -0.0264 -2.8447 13 6 1.9130 -0.5735 -4.0514 14 7 1.1282 0.0907 -4.8712 15 6 0.6834 1.3173 -4.5816 16 6 -0.1586 1.9931 -5.4951 17 1 -0.4013 3.0337 -5.3377 18 6 -0.6776 1.3130 -6.6037 19 7 -1.1969 1.9843 -7.5982 20 14 -0.6279 -0.5534 -6.6618 21 1 0.6397 -0.9953 -7.2967 22 1 -0.7044 -1.0938 -5.2807 23 1 -1.7795 -1.0548 -7.4541 24 6 1.0531 1.9430 -3.3797 25 1 -0.3633 0.4335 -0.9318 26 1 -0.3633 -1.0237 0.0905 27 1 -0.3634 0.5902 0.8412 28 1 3.0234 0.4468 2.7434 29 1 2.0294 1.8180 3.2914 30 1 1.2760 0.4703 2.4059 31 1 3.3619 3.4751 2.1286 32 1 5.0675 4.8842 -0.0552 33 1 3.6458 5.6138 -0.8393 34 1 3.7473 5.5491 0.9365 35 1 3.1249 3.6260 -2.1258 36 1 2.9600 -0.5844 -2.1816 37 1 2.2495 -1.5628 -4.3239 38 1 -1.2899 2.9480 -7.5368 39 1 0.6991 2.9361 -3.1456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244118000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -10.701978 kcal Electronic energy + Delta-G solvation = -21720.664395 eV Core-core repulsion = 18592.123371 eV Total energy + Delta-G solvation = -3128.541025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13195 -38.35424 -37.28172 -34.00683 -33.23395 -32.66628 -30.38589 -29.64792 -27.51868 -27.15638 -25.47283 -25.31862 -23.27247 -21.40767 -20.55973 -20.15342 -18.14579 -17.41648 -16.34915 -15.64178 -15.44346 -14.89282 -14.52072 -14.24302 -13.90123 -13.84314 -13.69561 -13.38864 -13.11571 -12.72639 -12.64770 -12.50497 -12.37032 -12.12467 -12.08511 -11.83715 -11.37769 -11.18023 -11.00902 -10.78915 -10.60924 -9.99096 -9.78522 -9.67633 -9.15905 -8.89810 -8.30754 -8.01140 -7.94993 -7.77248 -7.26015 -4.76380 1.26797 1.40231 2.54361 2.59947 3.55643 3.59601 3.65335 3.95640 4.16464 4.39780 4.58027 4.80465 4.88572 4.96280 5.28466 5.33049 5.42279 5.50174 5.55449 5.55993 5.57900 5.62387 5.69508 5.72224 5.75106 5.82987 5.88736 6.03153 6.22411 6.29996 6.42491 6.50235 6.57259 6.59690 6.74005 6.90369 6.98981 7.24666 7.42489 7.47383 7.66678 7.78782 8.07941 8.29697 8.64064 9.51047 9.98876 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.005046 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.577372 B = 5547.795711 C = 6260.162953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.325 6.325 3 C 0.098 3.902 4 C -0.103 4.103 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.091 4.091 8 C -0.111 4.111 9 C -0.101 4.101 10 C -0.037 4.037 11 C 0.014 3.986 12 C -0.279 4.279 13 C 0.144 3.856 14 N -0.568 5.568 15 C 0.251 3.749 16 C -0.481 4.481 17 H 0.080 0.920 18 C 0.050 3.950 19 N -0.804 5.804 20 Si 1.144 2.856 21 H -0.285 1.285 22 H -0.280 1.280 23 H -0.328 1.328 24 C -0.245 4.245 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.283 0.717 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 1.296 16.290 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.242 6.242 3 C 0.055 3.945 4 C -0.104 4.104 5 C -0.162 4.162 6 C -0.137 4.137 7 C -0.091 4.091 8 C -0.167 4.167 9 C -0.119 4.119 10 C -0.037 4.037 11 C 0.008 3.992 12 C -0.302 4.302 13 C -0.017 4.017 14 N -0.286 5.286 15 C 0.128 3.872 16 C -0.513 4.513 17 H 0.098 0.902 18 C -0.172 4.172 19 N -0.426 5.426 20 Si 0.977 3.023 21 H -0.212 1.212 22 H -0.207 1.207 23 H -0.261 1.261 24 C -0.267 4.267 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.146 -0.360 14.511 15.401 hybrid contribution 0.513 2.167 1.721 2.814 sum 5.659 1.808 16.232 17.285 Atomic orbital electron populations 1.22925 0.79227 1.02685 1.00770 1.85977 1.19557 1.24487 1.94168 1.18505 0.98419 0.86686 0.90939 1.20030 1.00675 0.94955 0.94699 1.20636 1.02378 0.99824 0.93329 1.20716 1.00860 0.94599 0.97518 1.19808 0.99518 0.96915 0.92882 1.20756 1.00043 0.93341 1.02595 1.21051 0.98710 0.94443 0.97741 1.19368 0.97846 0.93619 0.92885 1.18532 0.95722 0.93947 0.90989 1.21165 1.11592 0.96985 1.00453 1.22059 0.92094 0.97564 0.90023 1.66766 1.17584 1.10237 1.34053 1.18487 0.90774 0.87699 0.90259 1.20690 1.24600 0.98817 1.07196 0.90180 1.27700 0.89431 1.10428 0.89661 1.70629 1.31616 1.11572 1.28734 0.82113 0.74394 0.70172 0.75663 1.21165 1.20707 1.26052 1.21685 1.07169 1.01109 0.96734 0.92992 0.89163 0.94232 0.91186 0.91911 0.91517 0.86055 0.91294 0.91492 0.91739 0.85591 0.87656 0.85456 0.90550 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.72 101.05 1.08 1.65 16 2 O -0.33 -5.54 8.43 -19.17 -0.16 -5.71 16 3 C 0.10 1.67 5.64 -38.85 -0.22 1.45 16 4 C -0.10 -1.46 5.89 -104.52 -0.62 -2.08 16 5 C -0.11 -1.17 9.79 36.01 0.35 -0.81 16 6 C -0.12 -1.53 9.34 -39.55 -0.37 -1.90 16 7 C -0.09 -1.24 5.88 -104.65 -0.61 -1.86 16 8 C -0.11 -1.13 10.00 36.01 0.36 -0.77 16 9 C -0.10 -1.66 9.28 -39.27 -0.36 -2.03 16 10 C -0.04 -0.68 5.46 -104.76 -0.57 -1.25 16 11 C 0.01 0.30 4.88 -104.65 -0.51 -0.21 16 12 C -0.28 -5.98 9.11 -38.81 -0.35 -6.33 16 13 C 0.14 3.22 11.17 -17.61 -0.20 3.03 16 14 N -0.57 -14.53 4.99 -11.21 -0.06 -14.59 16 15 C 0.25 6.57 6.27 -85.03 -0.53 6.04 16 16 C -0.48 -13.16 9.52 -37.70 -0.36 -13.52 16 17 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 18 C 0.05 1.35 5.51 -17.34 -0.10 1.26 16 19 N -0.80 -21.97 13.65 55.55 0.76 -21.22 16 20 Si 1.14 28.12 25.94 -169.99 -4.41 23.71 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.90 6.51 56.52 0.37 -6.54 16 23 H -0.33 -7.88 7.11 56.52 0.40 -7.47 16 24 C -0.24 -5.78 9.46 -38.33 -0.36 -6.14 16 25 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.50 7.75 -51.93 -0.40 0.10 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.07 0.75 6.83 -51.93 -0.35 0.39 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.11 2.11 8.06 -52.48 -0.42 1.69 16 37 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 38 H 0.28 7.41 8.73 -40.82 -0.36 7.05 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -29.61 329.90 -7.69 -37.30 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.42 Total: -0.98 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -3.37 Total: -23.48 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.70 Total: -35.81 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.16 Total: -5.71 kcal Atomic # 14 Polarization: 28.12 SS G_CDS: -4.41 Total: 23.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.61 -7.69 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244118000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.594 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds