Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35600 * 116.99594 * 2 1 4 4 C 1.38517 * 120.08665 * 359.97438 * 3 2 1 5 5 C 1.38031 * 120.30654 * 180.27156 * 4 3 2 6 6 C 1.39932 * 120.47536 * 359.49720 * 5 4 3 7 7 C 1.48371 * 119.92198 * 180.27493 * 6 5 4 8 8 C 1.39353 * 120.53774 * 130.23084 * 7 6 5 9 9 N 1.31719 * 120.59241 * 179.97438 * 8 7 6 10 10 C 1.31913 * 121.85163 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.48001 * 179.97438 * 10 9 8 12 12 C 1.38274 * 121.03683 * 359.97438 * 10 9 8 13 13 C 1.38452 * 119.28149 * 359.78764 * 12 10 9 14 14 C 1.50700 * 120.84199 * 180.22823 * 13 12 10 15 15 C 1.38623 * 120.15537 * 0.50499 * 6 5 4 16 16 C 1.40524 * 119.69185 * 359.75113 * 15 6 5 17 17 C 1.41170 * 120.23213 * 179.97438 * 16 15 6 18 18 H 1.08005 * 120.00566 * 154.47151 * 17 16 15 19 19 C 1.39912 * 119.99820 * 334.46925 * 17 16 15 20 20 N 1.30874 * 120.00229 * 343.17436 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 163.17413 * 19 17 16 22 22 H 1.48503 * 109.47106 * 59.99934 * 21 19 17 23 23 H 1.48503 * 109.47519 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47464 * 300.00146 * 21 19 17 25 25 H 1.09002 * 109.47165 * 60.00002 * 1 2 3 26 26 H 1.09003 * 109.46722 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46900 * 299.99672 * 1 2 3 28 28 H 1.07991 * 119.84445 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.75789 * 179.74565 * 5 4 3 30 30 H 1.07996 * 119.70489 * 359.97438 * 8 7 6 31 31 H 1.09005 * 109.46820 * 90.00087 * 11 10 9 32 32 H 1.09003 * 109.47328 * 209.99737 * 11 10 9 33 33 H 1.09003 * 109.47313 * 330.00173 * 11 10 9 34 34 H 1.07999 * 120.35585 * 180.02562 * 12 10 9 35 35 H 1.09003 * 109.47464 * 270.23152 * 14 13 12 36 36 H 1.09005 * 109.47149 * 30.22714 * 14 13 12 37 37 H 1.08998 * 109.47405 * 150.22770 * 14 13 12 38 38 H 1.08000 * 120.15457 * 179.72342 * 15 6 5 39 39 H 0.96995 * 120.00268 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0062 6 6 3.3100 3.6937 -0.0009 7 6 3.9656 5.0247 -0.0009 8 6 4.9703 5.3192 0.9189 9 7 5.5533 6.5003 0.9195 10 6 5.2166 7.4433 0.0607 11 6 5.9186 8.7759 0.1097 12 6 4.2297 7.2282 -0.8836 13 6 3.5906 6.0009 -0.9277 14 6 2.5136 5.7267 -1.9456 15 6 4.0823 2.5425 -0.0004 16 6 3.4564 1.2844 0.0000 17 6 4.2318 0.1047 0.0000 18 1 3.8233 -0.8102 0.4033 19 6 5.5295 0.1206 -0.5227 20 7 5.9111 1.1042 -1.2971 21 14 6.7175 -1.2622 -0.1153 22 1 6.1559 -2.5529 -0.5886 23 1 8.0176 -1.0122 -0.7880 24 1 6.9233 -1.3212 1.3542 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2135 2.3131 -0.0005 29 1 1.3181 4.5043 -0.0107 30 1 5.2735 4.5723 1.6376 31 1 6.7949 8.7490 -0.5382 32 1 5.2391 9.5573 -0.2307 33 1 6.2297 8.9854 1.1331 34 1 3.9631 8.0080 -1.5817 35 1 1.5446 6.0104 -1.5348 36 1 2.7098 6.3068 -2.8473 37 1 2.5074 4.6647 -2.1909 38 1 5.1601 2.6122 -0.0008 39 1 6.8107 1.1151 -1.6597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244147379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = 0.930208 kcal Electronic energy + Delta-G solvation = -21572.550748 eV Core-core repulsion = 18444.514132 eV Total energy + Delta-G solvation = -3128.036615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.94695 -38.61859 -36.32301 -34.21627 -33.17681 -32.35139 -29.94505 -29.40605 -27.27744 -26.87886 -26.00816 -25.07894 -22.76002 -21.16384 -20.78777 -19.70611 -17.44634 -16.59981 -16.18293 -15.61235 -15.14500 -14.87286 -14.72901 -14.59225 -14.16726 -13.50254 -13.24489 -12.97672 -12.77663 -12.59971 -12.45453 -12.21942 -11.97105 -11.87729 -11.70716 -11.59624 -11.29902 -11.17527 -10.89205 -10.83104 -10.49805 -10.10643 -9.94710 -9.55033 -9.20811 -8.99351 -8.96692 -8.37027 -7.55912 -6.91948 -6.68923 -4.28584 1.47624 1.70503 2.72281 2.86598 3.09330 3.11991 3.19127 3.95706 4.20840 4.44788 4.57910 4.69840 5.00125 5.24899 5.39113 5.46975 5.53074 5.67133 5.70420 5.72045 5.77848 5.82082 5.90082 5.93955 5.95125 6.06826 6.14674 6.23945 6.29715 6.44078 6.53093 6.79032 6.83380 7.04761 7.15202 7.25956 7.30406 7.60353 7.64957 7.91176 8.11481 8.32552 8.45911 8.64386 8.80491 9.00000 10.19433 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.005890 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.611572 B = 4752.389177 C = 6269.518735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.020 3.980 4 C -0.180 4.180 5 C -0.188 4.188 6 C -0.069 4.069 7 C -0.059 4.059 8 C 0.109 3.891 9 N -0.490 5.490 10 C 0.102 3.898 11 C -0.096 4.096 12 C -0.175 4.175 13 C -0.039 4.039 14 C -0.112 4.112 15 C -0.122 4.122 16 C 0.096 3.904 17 C -0.445 4.445 18 H 0.083 0.917 19 C 0.074 3.926 20 N -0.796 5.796 21 Si 0.909 3.091 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.263 1.263 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 7.722 -0.190 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.024 4.024 4 C -0.199 4.199 5 C -0.207 4.207 6 C -0.070 4.070 7 C -0.061 4.061 8 C -0.048 4.048 9 N -0.200 5.200 10 C -0.035 4.035 11 C -0.154 4.154 12 C -0.195 4.195 13 C -0.047 4.047 14 C -0.169 4.169 15 C -0.141 4.141 16 C 0.093 3.907 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.144 4.144 20 N -0.422 5.422 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.172 0.828 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.775 7.790 0.261 8.274 hybrid contribution -0.416 -0.631 -0.602 0.966 sum -3.192 7.159 -0.341 7.846 Atomic orbital electron populations 1.22744 0.81678 1.01797 0.99948 1.85964 1.18268 1.28284 1.90020 1.19341 0.92375 0.82632 1.08060 1.20529 0.97438 0.92692 1.09229 1.20094 0.92699 0.95317 1.12634 1.18212 0.92786 0.90183 1.05811 1.19942 0.96418 0.94575 0.95188 1.22882 0.92063 0.92984 0.96890 1.67400 1.27287 1.01544 1.23787 1.21102 0.94632 0.95540 0.92261 1.20612 0.99830 0.91804 1.03149 1.21649 0.99135 0.97601 1.01104 1.20369 0.96357 0.92577 0.95392 1.20852 0.96025 1.03932 0.96045 1.21176 0.99383 0.89428 1.04158 1.16952 0.87291 0.93849 0.92597 1.19375 0.96994 0.96684 1.34427 0.89920 1.25886 0.98775 0.96968 0.92736 1.69807 1.19446 1.30717 1.22235 0.86344 0.78923 0.81454 0.79912 1.19005 1.20409 1.18791 0.94117 0.90002 0.94181 0.88397 0.88965 0.82762 0.91020 0.91349 0.90963 0.85645 0.91155 0.92182 0.89757 0.85407 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.03 9.77 -18.50 -0.18 -7.21 16 3 C 0.02 0.49 6.72 -38.28 -0.26 0.24 16 4 C -0.18 -3.87 9.01 -39.55 -0.36 -4.22 16 5 C -0.19 -3.96 7.99 -39.02 -0.31 -4.27 16 6 C -0.07 -1.53 4.79 -104.95 -0.50 -2.04 16 7 C -0.06 -1.19 5.47 -104.75 -0.57 -1.77 16 8 C 0.11 2.14 10.68 -17.18 -0.18 1.96 16 9 N -0.49 -9.14 10.26 -9.19 -0.09 -9.23 16 10 C 0.10 1.64 6.78 -82.54 -0.56 1.09 16 11 C -0.10 -1.14 10.16 36.01 0.37 -0.77 16 12 C -0.18 -2.73 9.43 -39.49 -0.37 -3.10 16 13 C -0.04 -0.69 5.91 -103.98 -0.61 -1.31 16 14 C -0.11 -1.74 8.53 36.01 0.31 -1.43 16 15 C -0.12 -3.04 8.13 -38.58 -0.31 -3.35 16 16 C 0.10 2.51 5.57 -106.73 -0.59 1.91 16 17 C -0.45 -11.80 8.71 -37.84 -0.33 -12.13 16 18 H 0.08 2.18 7.65 -52.48 -0.40 1.78 16 19 C 0.07 1.84 5.15 -17.33 -0.09 1.75 16 20 N -0.80 -20.43 10.96 55.55 0.61 -19.82 16 21 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 25 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.10 1.83 6.27 -52.49 -0.33 1.50 16 29 H 0.09 1.75 6.94 -52.49 -0.36 1.39 16 30 H 0.16 2.94 8.04 -52.49 -0.42 2.52 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.07 0.98 7.58 -51.93 -0.39 0.59 16 36 H 0.06 0.79 8.10 -51.93 -0.42 0.36 16 37 H 0.08 1.51 6.59 -51.93 -0.34 1.17 16 38 H 0.13 3.33 6.17 -52.49 -0.32 3.01 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -28.64 326.26 -8.21 -36.86 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.04 Total: 6.57 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -3.39 Total: -25.90 kcal Atomic # 7 Polarization: -29.57 SS G_CDS: 0.51 Total: -29.06 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.18 Total: -7.21 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.64 -8.21 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244147379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.787 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds