Wall clock time and date at job start Tue Mar 31 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35600 * 116.99594 * 2 1 4 4 C 1.38517 * 120.08665 * 359.97438 * 3 2 1 5 5 C 1.38031 * 120.30654 * 180.27156 * 4 3 2 6 6 C 1.39932 * 120.47536 * 359.49720 * 5 4 3 7 7 C 1.48371 * 119.92198 * 180.27493 * 6 5 4 8 8 C 1.39353 * 120.53774 * 130.23084 * 7 6 5 9 9 N 1.31719 * 120.59241 * 179.97438 * 8 7 6 10 10 C 1.31913 * 121.85163 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.48001 * 179.97438 * 10 9 8 12 12 C 1.38274 * 121.03683 * 359.97438 * 10 9 8 13 13 C 1.38452 * 119.28149 * 359.78764 * 12 10 9 14 14 C 1.50700 * 120.84199 * 180.22823 * 13 12 10 15 15 C 1.38623 * 120.15537 * 0.50499 * 6 5 4 16 16 C 1.40524 * 119.69185 * 359.75113 * 15 6 5 17 17 C 1.41170 * 120.23213 * 179.97438 * 16 15 6 18 18 H 1.08005 * 120.00566 * 154.47151 * 17 16 15 19 19 C 1.39912 * 119.99820 * 334.46925 * 17 16 15 20 20 N 1.30874 * 120.00229 * 343.17436 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 163.17413 * 19 17 16 22 22 H 1.48503 * 109.47106 * 59.99934 * 21 19 17 23 23 H 1.48503 * 109.47519 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47464 * 300.00146 * 21 19 17 25 25 H 1.09002 * 109.47165 * 60.00002 * 1 2 3 26 26 H 1.09003 * 109.46722 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46900 * 299.99672 * 1 2 3 28 28 H 1.07991 * 119.84445 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.75789 * 179.74565 * 5 4 3 30 30 H 1.07996 * 119.70489 * 359.97438 * 8 7 6 31 31 H 1.09005 * 109.46820 * 90.00087 * 11 10 9 32 32 H 1.09003 * 109.47328 * 209.99737 * 11 10 9 33 33 H 1.09003 * 109.47313 * 330.00173 * 11 10 9 34 34 H 1.07999 * 120.35585 * 180.02562 * 12 10 9 35 35 H 1.09003 * 109.47464 * 270.23152 * 14 13 12 36 36 H 1.09005 * 109.47149 * 30.22714 * 14 13 12 37 37 H 1.08998 * 109.47405 * 150.22770 * 14 13 12 38 38 H 1.08000 * 120.15457 * 179.72342 * 15 6 5 39 39 H 0.96995 * 120.00268 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0062 6 6 3.3100 3.6937 -0.0009 7 6 3.9656 5.0247 -0.0009 8 6 4.9703 5.3192 0.9189 9 7 5.5533 6.5003 0.9195 10 6 5.2166 7.4433 0.0607 11 6 5.9186 8.7759 0.1097 12 6 4.2297 7.2282 -0.8836 13 6 3.5906 6.0009 -0.9277 14 6 2.5136 5.7267 -1.9456 15 6 4.0823 2.5425 -0.0004 16 6 3.4564 1.2844 0.0000 17 6 4.2318 0.1047 0.0000 18 1 3.8233 -0.8102 0.4033 19 6 5.5295 0.1206 -0.5227 20 7 5.9111 1.1042 -1.2971 21 14 6.7175 -1.2622 -0.1153 22 1 6.1559 -2.5529 -0.5886 23 1 8.0176 -1.0122 -0.7880 24 1 6.9233 -1.3212 1.3542 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2135 2.3131 -0.0005 29 1 1.3181 4.5043 -0.0107 30 1 5.2735 4.5723 1.6376 31 1 6.7949 8.7490 -0.5382 32 1 5.2391 9.5573 -0.2307 33 1 6.2297 8.9854 1.1331 34 1 3.9631 8.0080 -1.5817 35 1 1.5446 6.0104 -1.5348 36 1 2.7098 6.3068 -2.8473 37 1 2.5074 4.6647 -2.1909 38 1 5.1601 2.6122 -0.0008 39 1 6.8107 1.1151 -1.6597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244147379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:37 Heat of formation + Delta-G solvation = -14.237881 kcal Electronic energy + Delta-G solvation = -21573.208485 eV Core-core repulsion = 18444.514132 eV Total energy + Delta-G solvation = -3128.694353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35185 -40.29011 -37.98393 -35.88984 -34.71495 -33.67343 -31.72768 -30.90945 -28.57764 -28.23112 -27.55810 -26.77399 -24.19698 -22.87014 -22.30241 -21.23725 -19.23942 -18.30994 -17.60787 -17.24095 -16.64802 -16.38741 -16.25495 -16.16555 -15.43366 -15.07344 -14.69452 -14.50196 -14.20770 -14.09803 -13.75295 -13.50387 -13.35222 -13.21201 -13.06522 -12.95540 -12.88479 -12.80211 -12.53117 -12.30874 -12.12072 -11.77183 -11.60519 -11.27058 -11.04564 -10.39428 -10.30020 -9.80447 -9.40358 -8.70769 -8.46624 -6.22795 0.05753 0.34143 0.95525 1.11700 1.36866 1.47605 1.51592 2.22020 2.68218 2.88047 2.91778 3.44433 3.63660 3.81763 3.89145 4.01876 4.24084 4.34689 4.42961 4.50493 4.52793 4.62950 4.65945 4.73172 4.75618 4.78873 4.84855 4.87115 5.01406 5.09467 5.19251 5.22240 5.27592 5.38507 5.42118 5.58113 5.76792 5.82557 5.93732 6.11591 6.29122 6.47249 6.78935 6.91955 7.09265 7.22010 8.36233 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.005890 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.611572 B = 4752.389177 C = 6269.518735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.009 3.991 4 C -0.180 4.180 5 C -0.174 4.174 6 C -0.067 4.067 7 C -0.091 4.091 8 C 0.093 3.907 9 N -0.511 5.511 10 C 0.099 3.901 11 C -0.094 4.094 12 C -0.168 4.168 13 C -0.043 4.043 14 C -0.109 4.109 15 C -0.141 4.141 16 C 0.058 3.942 17 C -0.484 4.484 18 H 0.069 0.931 19 C 0.035 3.965 20 N -0.829 5.829 21 Si 0.976 3.024 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.262 1.262 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.169 0.831 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 10.091 -0.970 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.255 6.255 3 C -0.036 4.036 4 C -0.199 4.199 5 C -0.193 4.193 6 C -0.068 4.068 7 C -0.093 4.093 8 C -0.063 4.063 9 N -0.221 5.221 10 C -0.038 4.038 11 C -0.151 4.151 12 C -0.187 4.187 13 C -0.051 4.051 14 C -0.165 4.165 15 C -0.161 4.161 16 C 0.055 3.945 17 C -0.514 4.514 18 H 0.088 0.912 19 C -0.179 4.179 20 N -0.456 5.456 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.186 1.186 25 H 0.071 0.929 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.186 0.814 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.056 10.158 -0.514 10.950 hybrid contribution -0.177 -1.169 -0.367 1.238 sum -4.234 8.989 -0.880 9.975 Atomic orbital electron populations 1.23104 0.78509 1.04228 1.01109 1.85911 1.21615 1.27953 1.90003 1.19503 0.92144 0.84082 1.07887 1.20884 0.99087 0.91856 1.08058 1.20469 0.92416 0.96342 1.10122 1.18414 0.93434 0.90586 1.04404 1.19908 0.97761 0.94447 0.97227 1.22748 0.92656 0.93628 0.97294 1.67446 1.27796 1.01622 1.25246 1.21953 0.94386 0.96407 0.91088 1.20752 1.00663 0.89959 1.03759 1.22076 0.97853 0.97606 1.01151 1.20707 0.96802 0.92713 0.94870 1.20867 0.96328 1.02525 0.96771 1.21043 0.98601 0.90423 1.06006 1.17332 0.88957 0.94277 0.93911 1.19472 0.98627 0.96625 1.36656 0.91232 1.26631 0.99792 0.99373 0.92061 1.69877 1.19924 1.32524 1.23315 0.85343 0.76930 0.78398 0.79613 1.18561 1.19253 1.18596 0.92928 0.87176 0.92744 0.85009 0.86063 0.84178 0.89719 0.88063 0.90949 0.81361 0.89135 0.89222 0.92727 0.87755 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.91 16 2 O -0.34 -15.60 9.77 -89.10 -0.87 -16.47 16 3 C 0.01 0.42 6.72 23.11 0.16 0.58 16 4 C -0.18 -7.60 9.01 22.29 0.20 -7.40 16 5 C -0.17 -7.20 7.99 22.63 0.18 -7.02 16 6 C -0.07 -3.08 4.79 -20.08 -0.10 -3.18 16 7 C -0.09 -3.72 5.47 -19.95 -0.11 -3.83 16 8 C 0.09 3.78 10.68 84.98 0.91 4.69 16 9 N -0.51 -18.92 10.26 -183.00 -1.88 -20.80 16 10 C 0.10 2.96 6.78 42.56 0.29 3.25 16 11 C -0.09 -1.87 10.16 71.24 0.72 -1.15 16 12 C -0.17 -4.63 9.43 22.33 0.21 -4.42 16 13 C -0.04 -1.44 5.91 -19.45 -0.11 -1.56 16 14 C -0.11 -3.06 8.53 71.24 0.61 -2.45 16 15 C -0.14 -7.47 8.13 22.92 0.19 -7.29 16 16 C 0.06 3.19 5.57 -21.23 -0.12 3.07 16 17 C -0.48 -27.30 8.71 23.40 0.20 -27.10 16 18 H 0.07 3.93 7.65 -2.91 -0.02 3.91 16 19 C 0.04 1.84 5.15 85.24 0.44 2.28 16 20 N -0.83 -45.05 10.96 21.82 0.24 -44.81 16 21 Si 0.98 40.40 29.59 68.60 2.03 42.43 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H 0.05 1.51 7.65 -2.39 -0.02 1.50 16 26 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.05 1.54 7.66 -2.39 -0.02 1.52 16 28 H 0.13 4.56 6.27 -2.92 -0.02 4.54 16 29 H 0.12 4.27 6.94 -2.91 -0.02 4.25 16 30 H 0.14 5.83 8.04 -2.91 -0.02 5.81 16 31 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.10 1.38 8.07 -2.39 -0.02 1.36 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.09 2.17 7.58 -2.39 -0.02 2.16 16 36 H 0.09 1.98 8.10 -2.38 -0.02 1.96 16 37 H 0.05 1.88 6.59 -2.39 -0.02 1.86 16 38 H 0.10 5.92 6.17 -2.91 -0.02 5.90 16 39 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 Total: -1.00 -67.05 326.26 5.36 -61.69 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 1.06 Total: 27.57 kcal Atomic # 6 Polarization: -54.39 SS G_CDS: 4.78 Total: -49.62 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -1.64 Total: -65.60 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.87 Total: -16.47 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -67.05 5.36 -61.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244147379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.453 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds