Wall clock time and date at job start Tue Mar 31 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38317 * 120.36129 * 2 1 4 4 N 1.31881 * 121.03388 * 179.97438 * 3 2 1 5 5 C 1.31749 * 121.85390 * 359.69299 * 4 3 2 6 6 C 1.39319 * 120.59185 * 0.59116 * 5 4 3 7 7 C 1.48362 * 120.53770 * 179.69804 * 6 5 4 8 8 C 1.39375 * 120.06837 * 309.72720 * 7 6 5 9 9 C 1.37905 * 119.93634 * 179.97438 * 8 7 6 10 10 C 1.38833 * 120.06518 * 359.97438 * 9 8 7 11 11 O 1.35871 * 119.93340 * 179.97438 * 10 9 8 12 12 C 1.42899 * 117.00032 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47549 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99692 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00375 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99975 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00195 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47375 * 59.99865 * 17 15 13 19 19 H 1.48503 * 109.47478 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46851 * 299.99643 * 17 15 13 21 21 C 1.38828 * 120.12827 * 0.02562 * 10 9 8 22 22 C 1.37908 * 120.06794 * 0.02562 * 21 10 9 23 23 C 1.38412 * 120.35753 * 179.97438 * 2 1 3 24 24 C 1.50702 * 120.84060 * 0.02562 * 23 2 1 25 25 H 1.08993 * 109.47915 * 270.03060 * 1 2 3 26 26 H 1.09001 * 109.46634 * 30.02706 * 1 2 3 27 27 H 1.09001 * 109.47141 * 150.02023 * 1 2 3 28 28 H 1.07999 * 119.47919 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.70187 * 180.31521 * 5 4 3 30 30 H 1.08007 * 120.03089 * 0.27565 * 8 7 6 31 31 H 1.08000 * 119.96453 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.46825 * 300.00484 * 12 11 10 33 33 H 1.08999 * 109.47230 * 59.99930 * 12 11 10 34 34 H 0.97004 * 120.00395 * 179.97438 * 16 15 13 35 35 H 1.07998 * 119.96822 * 179.97438 * 21 10 9 36 36 H 1.08006 * 120.03302 * 180.02562 * 22 21 10 37 37 H 1.09001 * 109.47360 * 270.01831 * 24 23 2 38 38 H 1.08996 * 109.47435 * 30.01904 * 24 23 2 39 39 H 1.09004 * 109.47003 * 150.02061 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1935 0.0000 4 7 3.5248 1.2090 0.0005 5 6 4.2332 0.0981 0.0070 6 6 3.6034 -1.1445 0.0013 7 6 4.4023 -2.3946 0.0019 8 6 5.4321 -2.5657 -0.9216 9 6 6.1733 -3.7286 -0.9182 10 6 5.8950 -4.7282 0.0042 11 8 6.6267 -5.8730 0.0048 12 6 6.2864 -6.8600 0.9806 13 6 7.1982 -8.0503 0.8304 14 1 7.9617 -8.0527 0.0664 15 6 7.0587 -9.1358 1.6689 16 7 6.1300 -9.1322 2.6002 17 14 8.1894 -10.6110 1.4832 18 1 9.5976 -10.1834 1.6813 19 1 7.8357 -11.6367 2.4971 20 1 8.0334 -11.1861 0.1229 21 6 4.8699 -4.5606 0.9253 22 6 4.1246 -3.4003 0.9261 23 6 2.2065 -1.1943 0.0005 24 6 1.4805 -2.5149 0.0005 25 1 -0.3635 0.0005 1.0275 26 1 -0.3632 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6635 2.1273 -0.0004 29 1 5.3119 0.1514 0.0124 30 1 5.6525 -1.7863 -1.6360 31 1 6.9711 -3.8618 -1.6339 32 1 6.4013 -6.4383 1.9791 33 1 5.2525 -7.1732 0.8353 34 1 6.0315 -9.8961 3.1899 35 1 4.6554 -5.3400 1.6415 36 1 3.3274 -3.2703 1.6432 37 1 1.3047 -2.8330 1.0282 38 1 0.5259 -2.4048 -0.5139 39 1 2.0857 -3.2623 -0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244151859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:47 Heat of formation + Delta-G solvation = 1.403264 kcal Electronic energy + Delta-G solvation = -20725.986362 eV Core-core repulsion = 17597.970260 eV Total energy + Delta-G solvation = -3128.016102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62147 -39.26735 -36.88854 -34.64957 -33.21992 -32.71310 -30.78911 -29.37642 -28.08373 -27.36384 -26.98692 -23.70449 -22.92377 -21.89888 -21.50012 -20.43544 -17.55981 -16.87459 -16.50949 -16.43498 -15.80023 -15.24705 -14.72056 -14.65180 -14.42636 -14.14440 -13.67652 -13.29982 -13.23015 -13.02302 -12.96692 -12.79776 -12.66408 -12.22629 -12.21151 -11.87768 -11.75357 -11.22430 -11.05673 -11.02524 -10.61494 -10.29522 -10.22143 -9.50898 -9.39544 -9.31903 -8.97555 -8.72099 -8.60138 -7.43440 -6.29612 -4.33762 0.85835 1.14723 1.67764 1.90365 3.23028 3.26161 3.29283 3.67825 4.09555 4.10568 4.34054 4.46344 4.59129 4.63726 4.70886 4.85514 5.06293 5.07679 5.15624 5.24451 5.27094 5.41987 5.46077 5.55029 5.59138 5.67520 5.74497 5.78641 5.92428 6.03720 6.09172 6.28100 6.32745 6.50692 6.66024 6.74561 6.79822 6.91514 7.07553 7.15481 7.62663 7.89509 7.91838 8.38931 8.78041 9.31750 10.81524 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036243 B = 0.003037 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.383522 B = 9218.211205 C = 9728.049134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.139 4.139 3 C 0.088 3.912 4 N -0.485 5.485 5 C 0.100 3.900 6 C -0.070 4.070 7 C -0.117 4.117 8 C -0.064 4.064 9 C -0.169 4.169 10 C 0.163 3.837 11 O -0.315 6.315 12 C 0.192 3.808 13 C -0.527 4.527 14 H 0.070 0.930 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.914 3.086 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.213 4.213 22 C -0.058 4.058 23 C -0.038 4.038 24 C -0.122 4.122 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 16.495 -4.594 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C -0.069 4.069 4 N -0.193 5.193 5 C -0.057 4.057 6 C -0.072 4.072 7 C -0.118 4.118 8 C -0.082 4.082 9 C -0.188 4.188 10 C 0.115 3.885 11 O -0.227 6.227 12 C 0.120 3.880 13 C -0.564 4.564 14 H 0.089 0.911 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.740 3.260 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.232 4.232 22 C -0.076 4.076 23 C -0.046 4.046 24 C -0.178 4.178 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.154 0.846 36 H 0.137 0.863 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.897 17.101 -4.559 20.278 hybrid contribution -0.052 -1.642 0.291 1.669 sum -9.950 15.459 -4.269 18.873 Atomic orbital electron populations 1.20759 0.90427 1.03067 1.02548 1.20706 0.97361 0.93514 1.02547 1.22583 0.90030 0.97143 0.97102 1.67604 1.08029 1.31356 1.12288 1.22883 1.00171 0.86677 0.96001 1.19693 0.92671 0.94177 1.00624 1.18249 0.99336 0.93937 1.00280 1.20830 0.93674 0.96467 0.97225 1.20357 1.03484 0.93436 1.01503 1.19404 0.89425 0.87312 0.92403 1.86130 1.55010 1.24385 1.57155 1.20676 0.97152 0.84400 0.85788 1.20934 1.17694 0.99615 1.18195 0.91149 1.24931 0.95902 0.98727 0.94577 1.69935 1.32646 1.31543 1.19127 0.86294 0.80612 0.80951 0.78094 1.19809 1.20958 1.19820 1.21412 0.99046 1.00059 1.02638 1.20921 0.97927 0.91996 0.96771 1.20263 0.92744 0.95541 0.96021 1.20979 1.00166 0.93720 1.02960 0.90958 0.91373 0.90992 0.83202 0.82723 0.85952 0.85340 0.95964 0.95971 0.92220 0.84604 0.86329 0.90441 0.91050 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.66 36.00 0.35 -0.43 16 2 C -0.14 -1.43 5.89 -104.53 -0.62 -2.05 16 3 C 0.09 0.96 10.85 -17.50 -0.19 0.77 16 4 N -0.49 -6.28 10.35 -12.97 -0.13 -6.41 16 5 C 0.10 1.27 10.70 -17.18 -0.18 1.08 16 6 C -0.07 -0.90 5.48 -104.75 -0.57 -1.48 16 7 C -0.12 -1.66 4.80 -104.88 -0.50 -2.17 16 8 C -0.06 -0.91 9.53 -39.28 -0.37 -1.28 16 9 C -0.17 -2.79 9.97 -39.48 -0.39 -3.19 16 10 C 0.16 3.22 6.69 -39.14 -0.26 2.95 16 11 O -0.31 -7.44 10.12 -19.33 -0.20 -7.64 16 12 C 0.19 5.01 4.49 36.00 0.16 5.17 16 13 C -0.53 -14.82 9.43 -34.45 -0.32 -15.15 16 14 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 17 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 C -0.21 -3.87 9.02 -39.48 -0.36 -4.22 16 22 C -0.06 -0.88 7.98 -39.28 -0.31 -1.19 16 23 C -0.04 -0.44 5.91 -103.98 -0.61 -1.06 16 24 C -0.12 -1.24 8.14 36.01 0.29 -0.94 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.07 0.47 6.07 -51.93 -0.32 0.16 16 28 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.16 1.75 8.05 -52.49 -0.42 1.33 16 30 H 0.12 1.43 8.05 -52.48 -0.42 1.01 16 31 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.02 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.02 0.60 7.65 -51.93 -0.40 0.20 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.14 2.61 6.28 -52.49 -0.33 2.28 16 36 H 0.12 1.58 6.95 -52.48 -0.36 1.21 16 37 H 0.08 0.73 7.60 -51.93 -0.39 0.34 16 38 H 0.07 0.59 6.08 -51.93 -0.32 0.27 16 39 H 0.08 0.92 6.59 -51.93 -0.34 0.58 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -30.13 328.05 -8.61 -38.73 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.94 Total: 0.77 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -4.00 Total: -21.59 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.60 Total: -31.20 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.20 Total: -7.64 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.13 -8.61 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244151859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.138 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds