Wall clock time and date at job start Tue Mar 31 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35605 * 116.99635 * 2 1 4 4 C 1.39151 * 119.88544 * 359.72370 * 3 2 1 5 5 C 1.36408 * 120.43694 * 179.72026 * 4 3 2 6 6 C 1.40909 * 120.19237 * 0.55495 * 5 4 3 7 7 C 1.41236 * 120.12467 * 179.74637 * 6 5 4 8 8 H 1.08003 * 119.99948 * 330.10582 * 7 6 5 9 9 C 1.39864 * 120.00221 * 150.10998 * 7 6 5 10 10 N 1.30890 * 119.99636 * 161.66319 * 9 7 6 11 11 Si 1.86793 * 120.00065 * 341.66172 * 9 7 6 12 12 H 1.48499 * 109.47288 * 95.41267 * 11 9 7 13 13 H 1.48502 * 109.47075 * 215.41807 * 11 9 7 14 14 H 1.48504 * 109.47120 * 335.41549 * 11 9 7 15 15 C 1.40624 * 119.75621 * 359.71939 * 6 5 4 16 16 C 1.38586 * 119.57261 * 0.02562 * 15 6 5 17 17 C 1.48339 * 120.09684 * 180.02562 * 16 15 6 18 18 C 1.39370 * 120.54105 * 64.70054 * 17 16 15 19 19 N 1.31717 * 120.59102 * 179.75246 * 18 17 16 20 20 C 1.31918 * 121.85582 * 0.54190 * 19 18 17 21 21 C 1.38277 * 121.03421 * 359.71961 * 20 19 18 22 22 C 1.50701 * 120.35556 * 179.97438 * 21 20 19 23 23 C 1.38453 * 119.28773 * 0.02562 * 21 20 19 24 24 C 1.50701 * 120.84072 * 179.97438 * 23 21 20 25 25 H 1.09010 * 109.46517 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46817 * 60.01031 * 1 2 3 27 27 H 1.08996 * 109.47601 * 300.00143 * 1 2 3 28 28 H 1.08002 * 119.77648 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.90582 * 180.25583 * 5 4 3 30 30 H 0.97011 * 119.99745 * 179.97438 * 10 9 7 31 31 H 1.08000 * 120.21159 * 180.02562 * 15 6 5 32 32 H 1.07993 * 119.70196 * 0.02562 * 18 17 16 33 33 H 1.07999 * 119.48641 * 179.74828 * 20 19 18 34 34 H 1.09003 * 109.47062 * 270.01993 * 22 21 20 35 35 H 1.08995 * 109.47397 * 30.02179 * 22 21 20 36 36 H 1.09000 * 109.47373 * 150.02293 * 22 21 20 37 37 H 1.08998 * 109.47053 * 270.01624 * 24 23 21 38 38 H 1.08996 * 109.47594 * 30.02164 * 24 23 21 39 39 H 1.09000 * 109.46634 * 150.02535 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2843 2.3737 -0.0058 5 6 1.8917 3.5951 -0.0001 6 6 3.2978 3.6872 -0.0001 7 6 3.9253 4.9526 0.0004 8 1 3.4387 5.7968 -0.4655 9 6 5.1768 5.1124 0.6040 10 7 5.9176 6.1505 0.3095 11 14 5.7909 3.8444 1.8305 12 1 6.6573 2.8604 1.1333 13 1 6.5711 4.5237 2.8959 14 1 4.6323 3.1411 2.4375 15 6 4.0741 2.5147 0.0000 16 6 3.4466 1.2790 -0.0004 17 6 4.2541 0.0346 0.0003 18 6 5.0691 -0.2801 1.0862 19 7 5.7828 -1.3872 1.0900 20 6 5.7659 -2.2299 0.0752 21 6 4.9871 -1.9861 -1.0411 22 6 4.9799 -2.9590 -2.1920 23 6 4.2149 -0.8380 -1.0905 24 6 3.3536 -0.5373 -2.2901 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 0.2061 2.3108 -0.0107 29 1 1.2933 4.4942 -0.0005 30 1 6.7855 6.2616 0.7285 31 1 5.1523 2.5767 0.0005 32 1 5.1124 0.3874 1.9340 33 1 6.3695 -3.1245 0.1171 34 1 5.7594 -2.6861 -2.9033 35 1 5.1656 -3.9657 -1.8179 36 1 4.0094 -2.9287 -2.6873 37 1 3.9276 0.0419 -3.0134 38 1 3.0294 -1.4717 -2.7481 39 1 2.4810 0.0356 -1.9763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244152961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:49 Heat of formation + Delta-G solvation = 5.724402 kcal Electronic energy + Delta-G solvation = -22185.175696 eV Core-core repulsion = 19057.346973 eV Total energy + Delta-G solvation = -3127.828723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19049 -38.86316 -36.63784 -34.23091 -33.61298 -32.77847 -29.96032 -29.46663 -27.77530 -26.90916 -26.64495 -24.58149 -22.93894 -21.42873 -20.94374 -19.88413 -17.47019 -17.25431 -16.45188 -16.00906 -15.39285 -15.14352 -15.05297 -14.52498 -14.23733 -13.48155 -13.18659 -13.12124 -12.91766 -12.72875 -12.63211 -12.49689 -12.38656 -12.30308 -11.98860 -11.74229 -11.48986 -11.13767 -11.01959 -10.81168 -10.38077 -10.24102 -10.02569 -9.73811 -9.17270 -9.09057 -8.89191 -8.53165 -7.78825 -7.24826 -6.96341 -4.45171 1.41118 1.62861 2.40352 2.51956 3.10791 3.19025 3.28590 3.95726 4.06280 4.12257 4.37539 4.76429 4.98266 5.06383 5.18865 5.21752 5.33545 5.45585 5.49742 5.52870 5.58361 5.70036 5.78501 5.84287 5.87500 5.95408 6.02438 6.11316 6.23011 6.38658 6.45795 6.52548 6.65513 6.75638 6.84275 7.08838 7.11932 7.25181 7.41878 7.67307 7.82263 8.20281 8.30412 8.35061 8.58410 8.75963 10.06411 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.007330 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.876659 B = 3818.848161 C = 4956.093737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.011 3.989 4 C -0.157 4.157 5 C -0.168 4.168 6 C 0.073 3.927 7 C -0.448 4.448 8 H 0.091 0.909 9 C 0.085 3.915 10 N -0.809 5.809 11 Si 0.898 3.102 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.242 1.242 15 C -0.192 4.192 16 C -0.037 4.037 17 C -0.056 4.056 18 C 0.098 3.902 19 N -0.489 5.489 20 C 0.083 3.917 21 C -0.147 4.147 22 C -0.106 4.106 23 C -0.023 4.023 24 C -0.118 4.118 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.285 0.715 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 -13.054 -2.830 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.237 6.237 3 C -0.033 4.033 4 C -0.176 4.176 5 C -0.187 4.187 6 C 0.070 3.930 7 C -0.477 4.477 8 H 0.109 0.891 9 C -0.133 4.133 10 N -0.434 5.434 11 Si 0.725 3.275 12 H -0.193 1.193 13 H -0.215 1.215 14 H -0.165 1.165 15 C -0.211 4.211 16 C -0.039 4.039 17 C -0.058 4.058 18 C -0.058 4.058 19 N -0.197 5.197 20 C -0.074 4.074 21 C -0.149 4.149 22 C -0.163 4.163 23 C -0.031 4.031 24 C -0.174 4.174 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.707 -13.218 -2.090 13.886 hybrid contribution -0.328 0.079 -0.097 0.351 sum -4.034 -13.139 -2.187 13.917 Atomic orbital electron populations 1.22763 0.80765 1.02023 1.00482 1.85905 1.19175 1.27915 1.90747 1.18365 0.90382 0.83349 1.11169 1.20498 0.97898 0.92691 1.06509 1.20703 0.94478 0.95542 1.08000 1.17608 0.91523 0.92742 0.91162 1.19350 1.00930 0.95478 1.31917 0.89097 1.26094 0.95141 0.95821 0.96274 1.69718 1.09909 1.28033 1.35715 0.86502 0.80181 0.80511 0.80348 1.19305 1.21540 1.16546 1.20934 0.98283 0.90630 1.11294 1.17496 0.89029 0.91216 1.06114 1.19724 0.96932 0.94986 0.94195 1.22819 0.92331 0.93428 0.97259 1.67559 1.20695 1.03635 1.27762 1.22475 0.97338 0.98302 0.89253 1.20649 0.99339 0.96911 0.97989 1.20704 1.02628 0.97160 0.95841 1.20183 0.94978 0.92442 0.95467 1.20897 0.99844 1.01949 0.94713 0.89863 0.93723 0.93742 0.87719 0.87663 0.90470 0.87298 0.83321 0.83537 0.91290 0.91688 0.91206 0.91101 0.91681 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 9.80 101.05 0.99 1.47 16 2 O -0.32 -5.83 8.45 -18.51 -0.16 -5.98 16 3 C 0.01 0.22 5.39 -38.44 -0.21 0.02 16 4 C -0.16 -3.12 8.95 -39.90 -0.36 -3.47 16 5 C -0.17 -3.69 9.72 -39.23 -0.38 -4.07 16 6 C 0.07 1.77 5.10 -106.85 -0.55 1.23 16 7 C -0.45 -11.81 9.55 -37.84 -0.36 -12.17 16 8 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 9 C 0.09 2.22 5.40 -17.34 -0.09 2.12 16 10 N -0.81 -21.47 13.93 55.54 0.77 -20.70 16 11 Si 0.90 20.74 24.52 -169.99 -4.17 16.57 16 12 H -0.27 -6.11 6.70 56.52 0.38 -5.73 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.24 -5.63 6.87 56.52 0.39 -5.24 16 15 C -0.19 -4.54 6.85 -38.55 -0.26 -4.80 16 16 C -0.04 -0.80 4.70 -104.81 -0.49 -1.30 16 17 C -0.06 -1.13 4.94 -104.75 -0.52 -1.65 16 18 C 0.10 1.95 10.90 -17.18 -0.19 1.76 16 19 N -0.49 -9.09 10.35 -12.97 -0.13 -9.22 16 20 C 0.08 1.31 10.85 -17.50 -0.19 1.12 16 21 C -0.15 -2.22 5.89 -104.53 -0.62 -2.84 16 22 C -0.11 -1.15 9.65 36.01 0.35 -0.80 16 23 C -0.02 -0.40 5.72 -103.98 -0.60 -1.00 16 24 C -0.12 -1.81 9.15 36.01 0.33 -1.48 16 25 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 26 H 0.04 0.55 7.63 -51.93 -0.40 0.16 16 27 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 28 H 0.10 1.75 6.26 -52.49 -0.33 1.43 16 29 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 30 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 31 H 0.11 2.65 4.74 -52.49 -0.25 2.40 16 32 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 33 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.07 0.71 6.07 -51.93 -0.32 0.39 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.82 6.08 -51.93 -0.32 0.50 16 39 H 0.09 1.48 4.86 -51.93 -0.25 1.22 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -28.51 316.85 -6.85 -35.36 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.80 Total: 5.05 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -3.14 Total: -25.85 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.64 Total: -29.92 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.16 Total: -5.98 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.17 Total: 16.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.51 -6.85 -35.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244152961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.088 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds