Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35605 * 116.99635 * 2 1 4 4 C 1.39151 * 119.88544 * 359.72370 * 3 2 1 5 5 C 1.36408 * 120.43694 * 179.72026 * 4 3 2 6 6 C 1.40909 * 120.19237 * 0.55495 * 5 4 3 7 7 C 1.41236 * 120.12467 * 179.74637 * 6 5 4 8 8 H 1.08003 * 119.99948 * 330.10582 * 7 6 5 9 9 C 1.39864 * 120.00221 * 150.10998 * 7 6 5 10 10 N 1.30890 * 119.99636 * 161.66319 * 9 7 6 11 11 Si 1.86793 * 120.00065 * 341.66172 * 9 7 6 12 12 H 1.48499 * 109.47288 * 95.41267 * 11 9 7 13 13 H 1.48502 * 109.47075 * 215.41807 * 11 9 7 14 14 H 1.48504 * 109.47120 * 335.41549 * 11 9 7 15 15 C 1.40624 * 119.75621 * 359.71939 * 6 5 4 16 16 C 1.38586 * 119.57261 * 0.02562 * 15 6 5 17 17 C 1.48339 * 120.09684 * 180.02562 * 16 15 6 18 18 C 1.39370 * 120.54105 * 64.70054 * 17 16 15 19 19 N 1.31717 * 120.59102 * 179.75246 * 18 17 16 20 20 C 1.31918 * 121.85582 * 0.54190 * 19 18 17 21 21 C 1.38277 * 121.03421 * 359.71961 * 20 19 18 22 22 C 1.50701 * 120.35556 * 179.97438 * 21 20 19 23 23 C 1.38453 * 119.28773 * 0.02562 * 21 20 19 24 24 C 1.50701 * 120.84072 * 179.97438 * 23 21 20 25 25 H 1.09010 * 109.46517 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46817 * 60.01031 * 1 2 3 27 27 H 1.08996 * 109.47601 * 300.00143 * 1 2 3 28 28 H 1.08002 * 119.77648 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.90582 * 180.25583 * 5 4 3 30 30 H 0.97011 * 119.99745 * 179.97438 * 10 9 7 31 31 H 1.08000 * 120.21159 * 180.02562 * 15 6 5 32 32 H 1.07993 * 119.70196 * 0.02562 * 18 17 16 33 33 H 1.07999 * 119.48641 * 179.74828 * 20 19 18 34 34 H 1.09003 * 109.47062 * 270.01993 * 22 21 20 35 35 H 1.08995 * 109.47397 * 30.02179 * 22 21 20 36 36 H 1.09000 * 109.47373 * 150.02293 * 22 21 20 37 37 H 1.08998 * 109.47053 * 270.01624 * 24 23 21 38 38 H 1.08996 * 109.47594 * 30.02164 * 24 23 21 39 39 H 1.09000 * 109.46634 * 150.02535 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2843 2.3737 -0.0058 5 6 1.8917 3.5951 -0.0001 6 6 3.2978 3.6872 -0.0001 7 6 3.9253 4.9526 0.0004 8 1 3.4387 5.7968 -0.4655 9 6 5.1768 5.1124 0.6040 10 7 5.9176 6.1505 0.3095 11 14 5.7909 3.8444 1.8305 12 1 6.6573 2.8604 1.1333 13 1 6.5711 4.5237 2.8959 14 1 4.6323 3.1411 2.4375 15 6 4.0741 2.5147 0.0000 16 6 3.4466 1.2790 -0.0004 17 6 4.2541 0.0346 0.0003 18 6 5.0691 -0.2801 1.0862 19 7 5.7828 -1.3872 1.0900 20 6 5.7659 -2.2299 0.0752 21 6 4.9871 -1.9861 -1.0411 22 6 4.9799 -2.9590 -2.1920 23 6 4.2149 -0.8380 -1.0905 24 6 3.3536 -0.5373 -2.2901 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 0.2061 2.3108 -0.0107 29 1 1.2933 4.4942 -0.0005 30 1 6.7855 6.2616 0.7285 31 1 5.1523 2.5767 0.0005 32 1 5.1124 0.3874 1.9340 33 1 6.3695 -3.1245 0.1171 34 1 5.7594 -2.6861 -2.9033 35 1 5.1656 -3.9657 -1.8179 36 1 4.0094 -2.9287 -2.6873 37 1 3.9276 0.0419 -3.0134 38 1 3.0294 -1.4717 -2.7481 39 1 2.4810 0.0356 -1.9763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244152961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = -10.485020 kcal Electronic energy + Delta-G solvation = -22185.878589 eV Core-core repulsion = 19057.346973 eV Total energy + Delta-G solvation = -3128.531617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58667 -40.35755 -38.26612 -35.57201 -35.30459 -34.27859 -31.73082 -30.89527 -29.04174 -28.21839 -27.79659 -26.33340 -24.40392 -22.95035 -22.38221 -21.46201 -19.31352 -18.78715 -17.77547 -17.37591 -17.10490 -16.69909 -16.35699 -16.11739 -15.42800 -15.02391 -14.92792 -14.59090 -14.29923 -14.19375 -13.94946 -13.71748 -13.67837 -13.56489 -13.48196 -13.03705 -12.79116 -12.63515 -12.54514 -12.33440 -12.13202 -11.92007 -11.64729 -11.43535 -11.00522 -10.50126 -10.26611 -9.84137 -9.45253 -8.96008 -8.90166 -6.40801 0.03671 0.29232 0.71463 0.75051 1.22784 1.31654 1.41058 2.06619 2.51206 2.68287 2.80789 3.38198 3.47284 3.74435 3.86789 3.90514 4.09610 4.15071 4.27529 4.44067 4.50521 4.56116 4.61281 4.68263 4.71582 4.74301 4.80059 4.84209 4.90318 4.93411 5.10008 5.14495 5.16851 5.27886 5.34229 5.47572 5.55815 5.66160 5.82343 5.88601 6.05132 6.29534 6.56150 6.78686 6.90060 7.00145 8.18713 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.007330 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.876659 B = 3818.848161 C = 4956.093737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C 0.038 3.962 4 C -0.156 4.156 5 C -0.169 4.169 6 C 0.050 3.950 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.054 3.946 10 N -0.852 5.852 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.250 1.250 15 C -0.199 4.199 16 C -0.048 4.048 17 C -0.083 4.083 18 C 0.074 3.926 19 N -0.506 5.506 20 C 0.082 3.918 21 C -0.137 4.137 22 C -0.104 4.104 23 C -0.034 4.034 24 C -0.114 4.114 25 H 0.114 0.886 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.144 0.856 29 H 0.115 0.885 30 H 0.291 0.709 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.186 0.814 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -17.132 -3.691 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C -0.006 4.006 4 C -0.174 4.174 5 C -0.189 4.189 6 C 0.047 3.953 7 C -0.510 4.510 8 H 0.081 0.919 9 C -0.160 4.160 10 N -0.479 5.479 11 Si 0.770 3.230 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.174 1.174 15 C -0.218 4.218 16 C -0.049 4.049 17 C -0.085 4.085 18 C -0.082 4.082 19 N -0.214 5.214 20 C -0.075 4.075 21 C -0.139 4.139 22 C -0.161 4.161 23 C -0.042 4.042 24 C -0.170 4.170 25 H 0.132 0.868 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.162 0.838 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.202 0.798 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.216 -17.300 -2.946 18.307 hybrid contribution -0.094 1.001 0.077 1.009 sum -5.311 -16.298 -2.869 17.380 Atomic orbital electron populations 1.23168 0.77879 1.04606 1.01537 1.85922 1.22046 1.26395 1.90064 1.18535 0.90219 0.84508 1.07346 1.20841 0.99919 0.91468 1.05210 1.20916 0.93625 0.97134 1.07200 1.17725 0.92884 0.92235 0.92418 1.19319 1.01953 0.95680 1.34093 0.91878 1.26569 0.95218 0.97025 0.97168 1.69745 1.10806 1.29723 1.37665 0.85788 0.79446 0.78747 0.79024 1.19602 1.20299 1.17352 1.20883 0.97654 0.91469 1.11836 1.17681 0.90222 0.91315 1.05726 1.19735 0.97891 0.95181 0.95676 1.22689 0.93687 0.94359 0.97420 1.67558 1.20835 1.03707 1.29326 1.23190 0.97160 0.98630 0.88548 1.21124 0.97302 0.96492 0.98935 1.20822 1.03794 0.97095 0.94365 1.20507 0.95727 0.92756 0.95217 1.20910 0.98727 1.03379 0.94016 0.86760 0.92215 0.92964 0.83838 0.86659 0.89891 0.88851 0.84743 0.79762 0.89881 0.89167 0.90091 0.91006 0.88387 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.80 113.37 1.11 1.62 16 2 O -0.33 -10.85 8.45 -89.15 -0.75 -11.61 16 3 C 0.04 1.49 5.39 23.01 0.12 1.61 16 4 C -0.16 -5.85 8.95 22.06 0.20 -5.65 16 5 C -0.17 -7.43 9.72 22.50 0.22 -7.21 16 6 C 0.05 2.51 5.10 -21.31 -0.11 2.40 16 7 C -0.48 -26.87 9.55 23.40 0.22 -26.65 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 9 C 0.05 2.97 5.40 85.23 0.46 3.43 16 10 N -0.85 -47.80 13.93 21.81 0.30 -47.50 16 11 Si 0.95 44.93 24.52 68.60 1.68 46.61 16 12 H -0.27 -12.75 6.70 99.48 0.67 -12.08 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.25 -11.97 6.87 99.48 0.68 -11.28 16 15 C -0.20 -9.68 6.85 22.94 0.16 -9.53 16 16 C -0.05 -2.07 4.70 -19.98 -0.09 -2.17 16 17 C -0.08 -3.27 4.94 -19.95 -0.10 -3.37 16 18 C 0.07 2.96 10.90 84.98 0.93 3.89 16 19 N -0.51 -18.23 10.35 -194.93 -2.02 -20.25 16 20 C 0.08 2.32 10.85 84.69 0.92 3.24 16 21 C -0.14 -3.64 5.89 -19.80 -0.12 -3.76 16 22 C -0.10 -1.71 9.65 71.24 0.69 -1.02 16 23 C -0.03 -1.12 5.72 -19.45 -0.11 -1.23 16 24 C -0.11 -3.18 9.15 71.24 0.65 -2.53 16 25 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.06 1.20 7.63 -2.39 -0.02 1.18 16 27 H 0.05 1.13 7.66 -2.39 -0.02 1.11 16 28 H 0.14 4.23 6.26 -2.91 -0.02 4.21 16 29 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.29 14.83 8.30 -92.70 -0.77 14.06 16 31 H 0.09 4.77 4.74 -2.91 -0.01 4.76 16 32 H 0.14 5.52 8.06 -2.91 -0.02 5.50 16 33 H 0.19 3.69 8.06 -2.91 -0.02 3.66 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 36 H 0.08 1.19 6.07 -2.39 -0.01 1.17 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 2.02 6.08 -2.39 -0.01 2.01 16 39 H 0.07 2.15 4.86 -2.39 -0.01 2.14 16 Total: -1.00 -65.71 316.85 5.37 -60.34 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.01 Total: 19.31 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 5.15 Total: -46.90 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -1.71 Total: -67.75 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.75 Total: -11.61 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.68 Total: 46.61 kcal Total: -65.71 5.37 -60.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244152961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.852 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds