Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35674 * 116.99733 * 2 1 4 4 C 1.37986 * 120.19647 * 0.27547 * 3 2 1 5 5 C 1.39621 * 119.93415 * 180.30060 * 4 3 2 6 6 C 1.48032 * 119.83946 * 179.69551 * 5 4 3 7 7 C 1.39588 * 120.55814 * 309.74320 * 6 5 4 8 8 N 1.31666 * 120.56313 * 179.77055 * 7 6 5 9 9 C 1.31954 * 121.87358 * 0.50013 * 8 7 6 10 10 C 1.38331 * 121.07987 * 359.76235 * 9 8 7 11 11 C 1.50697 * 120.34719 * 179.97438 * 10 9 8 12 12 C 1.38384 * 119.30460 * 359.97438 * 10 9 8 13 13 C 1.50701 * 120.85343 * 179.97438 * 12 10 9 14 14 C 1.40071 * 120.32377 * 359.71854 * 5 4 3 15 15 C 1.36117 * 120.39564 * 359.97438 * 14 5 4 16 16 C 1.40910 * 120.06022 * 0.02562 * 15 14 5 17 17 C 1.40832 * 120.16651 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00520 * 154.55664 * 17 16 15 19 19 C 1.40008 * 119.99365 * 334.55962 * 17 16 15 20 20 N 1.30833 * 120.00215 * 334.51692 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 154.52058 * 19 17 16 22 22 H 1.48501 * 109.47344 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47262 * 299.99950 * 21 19 17 24 24 H 1.48500 * 109.46885 * 59.99544 * 21 19 17 25 25 H 1.08998 * 109.47650 * 300.00168 * 1 2 3 26 26 H 1.08997 * 109.46879 * 60.00544 * 1 2 3 27 27 H 1.09002 * 109.46452 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.03348 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.71618 * 0.02562 * 7 6 5 30 30 H 1.08002 * 119.45764 * 179.75123 * 9 8 7 31 31 H 1.08994 * 109.47125 * 270.02819 * 11 10 9 32 32 H 1.09005 * 109.46953 * 30.02877 * 11 10 9 33 33 H 1.08997 * 109.46771 * 150.01840 * 11 10 9 34 34 H 1.08998 * 109.47106 * 270.02382 * 13 12 10 35 35 H 1.09007 * 109.46664 * 30.01854 * 13 12 10 36 36 H 1.08994 * 109.47628 * 150.01862 * 13 12 10 37 37 H 1.07999 * 119.80053 * 179.97438 * 14 5 4 38 38 H 1.08001 * 119.96792 * 180.02562 * 15 14 5 39 39 H 0.96997 * 119.99811 * 354.16664 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2973 2.3687 0.0057 5 6 1.9367 3.6098 -0.0006 6 6 1.1326 4.8527 -0.0013 7 6 0.0982 5.0282 -0.9220 8 7 -0.6200 6.1318 -0.9197 9 6 -0.3904 7.1108 -0.0654 10 6 0.6199 7.0159 0.8748 11 6 0.8680 8.1443 1.8423 12 6 1.4003 5.8739 0.9175 13 6 2.5105 5.7338 1.9269 14 6 3.3354 3.6847 -0.0069 15 6 4.0859 2.5491 -0.0063 16 6 3.4577 1.2879 0.0001 17 6 4.2320 0.1115 0.0012 18 1 3.8250 -0.8025 0.4075 19 6 5.5296 0.1272 -0.5243 20 7 5.8573 1.0110 -1.4316 21 14 6.7931 -1.1138 0.0699 22 1 8.0794 -0.8879 -0.6370 23 1 6.9962 -0.9520 1.5320 24 1 6.3079 -2.4884 -0.2132 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.2186 2.3164 0.0098 29 1 -0.1175 4.2505 -1.6397 30 1 -1.0011 8.0008 -0.1008 31 1 1.5859 8.8417 1.4107 32 1 -0.0689 8.6644 2.0419 33 1 1.2663 7.7429 2.7741 34 1 3.4363 6.1253 1.5054 35 1 2.2559 6.2935 2.8270 36 1 2.6423 4.6815 2.1785 37 1 3.8213 4.6492 -0.0122 38 1 5.1639 2.6149 -0.0108 39 1 5.1811 1.5996 -1.8018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244154307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = -4.684397 kcal Electronic energy + Delta-G solvation = -21615.886092 eV Core-core repulsion = 18487.606010 eV Total energy + Delta-G solvation = -3128.280083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.05228 -38.74779 -36.44933 -34.54687 -34.08267 -32.07661 -29.44202 -29.16161 -27.68712 -26.73366 -26.53906 -25.14048 -22.29748 -21.34905 -20.63309 -20.19021 -18.19640 -16.63687 -16.34108 -15.90856 -15.16973 -14.83665 -14.75289 -14.33440 -14.20945 -13.92691 -13.21514 -13.03763 -12.93038 -12.69322 -12.57631 -12.49454 -12.32072 -12.02347 -11.76532 -11.65467 -11.31781 -11.16810 -10.98738 -10.57140 -10.45990 -10.20534 -10.10284 -9.66584 -9.13384 -9.02059 -8.89579 -8.54375 -7.63018 -7.47257 -7.09791 -4.43914 1.38881 1.60719 2.60457 2.77721 3.10848 3.18801 3.31181 3.92946 4.12975 4.36337 4.43331 4.79785 4.98277 5.09595 5.18964 5.24753 5.32991 5.55346 5.62032 5.69762 5.72413 5.77750 5.81564 5.84746 5.92389 6.00198 6.04032 6.16491 6.21557 6.34944 6.50562 6.63600 6.78572 6.87825 7.04512 7.12189 7.33104 7.48963 7.63387 7.78638 7.93275 8.07120 8.24180 8.37043 8.66532 8.82641 9.89377 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.004748 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.498711 B = 5896.194618 C = 6709.201744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.007 3.993 4 C -0.141 4.141 5 C -0.185 4.185 6 C -0.031 4.031 7 C 0.081 3.919 8 N -0.486 5.486 9 C 0.066 3.934 10 C -0.139 4.139 11 C -0.108 4.108 12 C -0.055 4.055 13 C -0.114 4.114 14 C -0.069 4.069 15 C -0.214 4.214 16 C 0.093 3.907 17 C -0.485 4.485 18 H 0.084 0.916 19 C 0.036 3.964 20 N -0.784 5.784 21 Si 1.066 2.934 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.274 1.274 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 6.413 4.670 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.037 4.037 4 C -0.160 4.160 5 C -0.187 4.187 6 C -0.033 4.033 7 C -0.076 4.076 8 N -0.194 5.194 9 C -0.091 4.091 10 C -0.141 4.141 11 C -0.165 4.165 12 C -0.063 4.063 13 C -0.170 4.170 14 C -0.088 4.088 15 C -0.233 4.233 16 C 0.089 3.911 17 C -0.512 4.512 18 H 0.102 0.898 19 C -0.187 4.187 20 N -0.406 5.406 21 Si 0.889 3.111 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.199 1.199 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.465 5.900 3.854 8.343 hybrid contribution -1.386 0.619 0.621 1.640 sum -5.850 6.519 4.475 9.836 Atomic orbital electron populations 1.22751 0.81488 1.01928 1.00017 1.85970 1.18375 1.27949 1.90329 1.18966 0.92074 0.82711 1.09948 1.20613 0.97270 0.91758 1.06363 1.17468 0.92031 0.89508 1.19712 1.19824 0.95313 0.94245 0.93934 1.22880 0.92650 0.94780 0.97318 1.67493 1.27338 1.01364 1.23200 1.22387 0.96640 0.97421 0.92613 1.20636 0.97775 0.96408 0.99280 1.20719 1.01988 0.95928 0.97857 1.20285 0.96878 0.92938 0.96178 1.20874 0.95855 1.03859 0.96394 1.20302 0.92212 0.96943 0.99341 1.20565 0.98833 0.91172 1.12729 1.17160 0.88104 0.93756 0.92083 1.20564 0.99388 0.97477 1.33791 0.89776 1.27165 0.99143 0.99298 0.93140 1.70461 1.40036 1.13936 1.16180 0.83614 0.75264 0.74961 0.77242 1.19732 1.19818 1.19919 0.94201 0.94045 0.89846 0.88322 0.83387 0.83865 0.91327 0.91749 0.91246 0.91108 0.91903 0.90090 0.88959 0.86915 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.04 9.78 -18.72 -0.18 -7.23 16 3 C 0.01 0.17 6.71 -38.43 -0.26 -0.09 16 4 C -0.14 -3.05 8.50 -39.16 -0.33 -3.38 16 5 C -0.19 -3.90 4.82 -104.68 -0.50 -4.40 16 6 C -0.03 -0.59 5.47 -104.73 -0.57 -1.16 16 7 C 0.08 1.48 10.69 -17.12 -0.18 1.30 16 8 N -0.49 -8.54 10.35 -12.90 -0.13 -8.67 16 9 C 0.07 1.01 10.85 -17.46 -0.19 0.82 16 10 C -0.14 -2.04 5.89 -104.54 -0.62 -2.65 16 11 C -0.11 -1.15 9.65 36.00 0.35 -0.80 16 12 C -0.06 -0.92 5.91 -103.92 -0.61 -1.54 16 13 C -0.11 -1.69 8.13 36.01 0.29 -1.40 16 14 C -0.07 -1.51 7.90 -39.66 -0.31 -1.82 16 15 C -0.21 -5.14 7.87 -39.33 -0.31 -5.45 16 16 C 0.09 2.36 5.31 -106.66 -0.57 1.79 16 17 C -0.49 -12.52 8.63 -37.94 -0.33 -12.85 16 18 H 0.08 2.18 7.71 -52.49 -0.40 1.77 16 19 C 0.04 0.87 4.93 -17.31 -0.09 0.78 16 20 N -0.78 -19.93 12.30 55.55 0.68 -19.24 16 21 Si 1.07 20.72 30.00 -169.99 -5.10 15.62 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 26 H 0.04 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.94 6.28 -52.49 -0.33 1.61 16 29 H 0.15 2.59 8.05 -52.48 -0.42 2.17 16 30 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.70 6.07 -51.93 -0.32 0.38 16 34 H 0.07 1.00 7.58 -51.93 -0.39 0.61 16 35 H 0.06 0.77 6.08 -51.93 -0.32 0.46 16 36 H 0.08 1.37 6.59 -51.93 -0.34 1.03 16 37 H 0.09 1.84 6.93 -52.49 -0.36 1.48 16 38 H 0.11 2.78 6.47 -52.49 -0.34 2.45 16 39 H 0.30 7.89 6.69 -40.82 -0.27 7.62 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -27.82 321.04 -7.92 -35.73 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.78 Total: 8.25 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -3.24 Total: -29.30 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.55 Total: -27.92 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.18 Total: -7.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.10 Total: 15.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.82 -7.92 -35.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244154307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.047 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds