Wall clock time and date at job start Tue Mar 31 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00453 * 2 1 4 4 C 1.50703 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.38407 * 119.92427 * 269.97113 * 4 3 2 6 6 C 1.38367 * 120.29179 * 179.97438 * 5 4 3 7 7 C 1.37962 * 120.14497 * 359.74794 * 6 5 4 8 8 C 1.50697 * 120.07690 * 180.25294 * 7 6 5 9 9 C 1.39590 * 119.84912 * 0.52866 * 7 6 5 10 10 C 1.47971 * 120.14255 * 179.74783 * 9 7 6 11 11 C 1.39888 * 119.45147 * 131.58125 * 10 9 7 12 12 C 1.36607 * 119.46839 * 179.97438 * 11 10 9 13 13 C 1.41307 * 118.41204 * 0.25644 * 12 11 10 14 14 C 1.41047 * 120.55307 * 179.75100 * 13 12 11 15 15 H 1.08005 * 119.99871 * 207.42517 * 14 13 12 16 16 C 1.40027 * 120.00253 * 27.41674 * 14 13 12 17 17 N 1.30791 * 120.00100 * 13.54150 * 16 14 13 18 18 Si 1.86799 * 120.00144 * 193.53767 * 16 14 13 19 19 H 1.48501 * 109.47071 * 90.00037 * 18 16 14 20 20 H 1.48499 * 109.47227 * 209.99939 * 18 16 14 21 21 H 1.48501 * 109.47189 * 330.00379 * 18 16 14 22 22 C 1.40948 * 118.89196 * 359.47418 * 13 12 11 23 23 N 1.31275 * 120.39970 * 0.53740 * 22 13 12 24 24 C 1.37913 * 119.92815 * 89.99972 * 4 3 2 25 25 H 1.09000 * 109.46983 * 300.00741 * 1 2 3 26 26 H 1.09004 * 109.47186 * 59.99839 * 1 2 3 27 27 H 1.09001 * 109.47689 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47095 * 59.99916 * 3 2 1 29 29 H 1.09004 * 109.46445 * 299.99433 * 3 2 1 30 30 H 1.07995 * 119.85480 * 0.03097 * 5 4 3 31 31 H 1.07995 * 119.93235 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.46991 * 265.08673 * 8 7 6 33 33 H 1.09008 * 109.47331 * 25.08398 * 8 7 6 34 34 H 1.08993 * 109.47421 * 145.08516 * 8 7 6 35 35 H 1.08004 * 120.26454 * 359.97300 * 11 10 9 36 36 H 1.07999 * 120.79474 * 179.97438 * 12 11 10 37 37 H 0.97000 * 120.00139 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.80016 * 180.25078 * 22 13 12 39 39 H 1.08008 * 120.07473 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2014 1.1321 1.1986 6 6 5.5807 1.0222 1.2069 7 6 6.2780 0.9607 0.0181 8 6 7.7797 0.8353 0.0289 9 6 5.5898 1.0207 -1.1949 10 6 6.3316 0.9609 -2.4738 11 6 5.9041 0.0843 -3.4766 12 6 6.5884 0.0292 -4.6577 13 6 7.7165 0.8644 -4.8207 14 6 8.4592 0.8403 -6.0195 15 1 9.5075 1.1001 -6.0107 16 6 7.8375 0.4793 -7.2212 17 7 6.5327 0.4225 -7.2911 18 14 8.8717 0.0790 -8.7244 19 1 9.1838 -1.3728 -8.7382 20 1 8.1176 0.4349 -9.9531 21 1 10.1360 0.8566 -8.6768 22 6 8.0838 1.7261 -3.7675 23 7 7.3934 1.7424 -2.6511 24 6 4.1980 1.1321 -1.1961 25 1 -0.3633 0.5140 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.6599 1.1749 2.1320 31 1 6.1123 0.9800 2.1460 32 1 8.2276 1.8251 -0.0593 33 1 8.0991 0.3740 0.9635 34 1 8.0987 0.2162 -0.8094 35 1 5.0399 -0.5439 -3.3184 36 1 6.2773 -0.6400 -5.4462 37 1 6.1021 0.1728 -8.1237 38 1 8.9410 2.3736 -3.8779 39 1 3.6594 1.1754 -2.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244168009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:52 Heat of formation + Delta-G solvation = -9.082795 kcal Electronic energy + Delta-G solvation = -20965.117902 eV Core-core repulsion = 17836.647091 eV Total energy + Delta-G solvation = -3128.470812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.42343 -38.18426 -37.32834 -34.27394 -32.88097 -31.50132 -30.64680 -29.12481 -28.51889 -26.35851 -25.54425 -23.96158 -22.60589 -21.87805 -20.86193 -19.69320 -17.45239 -16.43786 -16.24976 -15.96528 -15.49288 -15.02195 -14.82010 -14.56246 -14.23590 -13.89092 -13.45276 -13.11993 -12.71847 -12.47635 -12.22204 -12.17558 -11.84814 -11.73512 -11.71069 -11.50684 -11.35920 -11.21920 -11.15801 -10.75383 -10.54121 -10.45862 -9.87845 -9.70340 -9.51153 -8.55836 -8.30582 -8.22566 -7.96567 -7.39452 -6.94314 -4.56912 1.62640 1.78824 2.59398 2.94014 2.97558 3.00191 3.11471 3.77220 3.81434 4.35291 4.54506 5.00857 5.04240 5.24693 5.28822 5.31781 5.40998 5.45012 5.51200 5.56356 5.61312 5.76556 5.91289 6.07486 6.16860 6.29003 6.34308 6.47083 6.60754 6.67066 6.76293 6.81425 6.86557 6.93459 7.02357 7.13617 7.20095 7.27747 7.40604 7.70325 7.79491 7.88695 8.34543 8.56225 8.63381 9.54596 9.95967 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.003955 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.253247 B = 7077.493123 C = 8221.389718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.108 3.892 4 C -0.104 4.104 5 C -0.115 4.115 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.099 4.099 9 C 0.013 3.987 10 C 0.001 3.999 11 C -0.123 4.123 12 C -0.137 4.137 13 C 0.070 3.930 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.786 5.786 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.019 4.019 23 N -0.445 5.445 24 C -0.093 4.093 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.285 0.715 38 H 0.128 0.872 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 -0.291 9.422 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.032 3.968 4 C -0.104 4.104 5 C -0.133 4.133 6 C -0.146 4.146 7 C -0.065 4.065 8 C -0.155 4.155 9 C 0.012 3.988 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.163 4.163 13 C 0.065 3.935 14 C -0.472 4.472 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.410 5.410 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.183 4.183 23 N -0.152 5.152 24 C -0.112 4.112 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.146 0.854 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.445 0.051 9.908 11.820 hybrid contribution -0.258 -0.507 -1.571 1.671 sum -6.704 -0.455 8.338 10.708 Atomic orbital electron populations 1.22731 0.81535 1.02599 0.99769 1.88005 1.19129 1.27874 1.95336 1.21318 0.90438 0.84699 1.00380 1.19300 0.93225 1.04311 0.93587 1.20830 0.94126 1.01635 0.96728 1.20845 0.93857 1.02651 0.97239 1.20071 0.96320 0.98077 0.92027 1.20649 0.91222 1.02615 1.01046 1.18514 0.91741 0.96714 0.91835 1.18720 0.97928 1.02993 0.93768 1.21284 0.99449 0.99295 0.94335 1.21318 0.98297 1.00581 0.96066 1.18595 0.92144 0.89309 0.93406 1.19617 0.97689 1.38610 0.91315 0.89702 1.26033 0.95109 0.92418 1.01161 1.69763 1.09865 1.32754 1.28640 0.86173 0.80586 0.79905 0.79352 1.19082 1.20093 1.18337 1.22489 1.02272 1.02057 0.91479 1.67085 1.04511 1.19957 1.23684 1.21097 0.93503 0.99527 0.97092 0.94328 0.94113 0.89763 0.92851 0.92630 0.86860 0.86537 0.90808 0.93289 0.91324 0.88343 0.85660 0.90389 0.85403 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.47 10.69 -35.23 -0.38 -5.85 16 3 C 0.11 1.44 6.06 36.01 0.22 1.66 16 4 C -0.10 -1.68 5.50 -104.68 -0.58 -2.26 16 5 C -0.11 -1.73 9.70 -39.47 -0.38 -2.11 16 6 C -0.13 -2.01 9.67 -39.64 -0.38 -2.39 16 7 C -0.06 -1.18 5.91 -104.22 -0.62 -1.79 16 8 C -0.10 -1.71 8.73 36.00 0.31 -1.39 16 9 C 0.01 0.26 5.60 -104.89 -0.59 -0.33 16 10 C 0.00 0.03 5.45 -82.75 -0.45 -0.43 16 11 C -0.12 -2.90 9.40 -39.55 -0.37 -3.28 16 12 C -0.14 -3.47 8.71 -39.01 -0.34 -3.81 16 13 C 0.07 1.80 5.56 -106.64 -0.59 1.20 16 14 C -0.44 -11.06 9.07 -37.85 -0.34 -11.40 16 15 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 16 C 0.07 1.71 5.23 -17.32 -0.09 1.62 16 17 N -0.79 -19.31 10.93 55.55 0.61 -18.70 16 18 Si 0.92 17.61 29.58 -169.99 -5.03 12.58 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 C -0.02 -0.46 10.97 -16.76 -0.18 -0.65 16 23 N -0.45 -10.67 8.75 -9.10 -0.08 -10.75 16 24 C -0.09 -1.73 9.09 -39.18 -0.36 -2.09 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.70 8.05 -51.92 -0.42 0.28 16 34 H 0.07 1.33 7.00 -51.93 -0.36 0.97 16 35 H 0.10 2.13 7.98 -52.48 -0.42 1.71 16 36 H 0.13 3.22 6.32 -52.49 -0.33 2.89 16 37 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.13 2.89 8.06 -52.49 -0.42 2.46 16 39 H 0.12 2.19 7.99 -52.48 -0.42 1.77 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -27.75 333.36 -8.78 -36.53 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.30 Total: 7.19 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -3.63 Total: -26.03 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.53 Total: -29.45 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.38 Total: -5.85 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.75 -8.78 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244168009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.446 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds