Wall clock time and date at job start Tue Mar 31 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00453 * 2 1 4 4 C 1.50703 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.38407 * 119.92427 * 269.97113 * 4 3 2 6 6 C 1.38367 * 120.29179 * 179.97438 * 5 4 3 7 7 C 1.37962 * 120.14497 * 359.74794 * 6 5 4 8 8 C 1.50697 * 120.07690 * 180.25294 * 7 6 5 9 9 C 1.39590 * 119.84912 * 0.52866 * 7 6 5 10 10 C 1.47971 * 120.14255 * 179.74783 * 9 7 6 11 11 C 1.39888 * 119.45147 * 131.58125 * 10 9 7 12 12 C 1.36607 * 119.46839 * 179.97438 * 11 10 9 13 13 C 1.41307 * 118.41204 * 0.25644 * 12 11 10 14 14 C 1.41047 * 120.55307 * 179.75100 * 13 12 11 15 15 H 1.08005 * 119.99871 * 207.42517 * 14 13 12 16 16 C 1.40027 * 120.00253 * 27.41674 * 14 13 12 17 17 N 1.30791 * 120.00100 * 13.54150 * 16 14 13 18 18 Si 1.86799 * 120.00144 * 193.53767 * 16 14 13 19 19 H 1.48501 * 109.47071 * 90.00037 * 18 16 14 20 20 H 1.48499 * 109.47227 * 209.99939 * 18 16 14 21 21 H 1.48501 * 109.47189 * 330.00379 * 18 16 14 22 22 C 1.40948 * 118.89196 * 359.47418 * 13 12 11 23 23 N 1.31275 * 120.39970 * 0.53740 * 22 13 12 24 24 C 1.37913 * 119.92815 * 89.99972 * 4 3 2 25 25 H 1.09000 * 109.46983 * 300.00741 * 1 2 3 26 26 H 1.09004 * 109.47186 * 59.99839 * 1 2 3 27 27 H 1.09001 * 109.47689 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47095 * 59.99916 * 3 2 1 29 29 H 1.09004 * 109.46445 * 299.99433 * 3 2 1 30 30 H 1.07995 * 119.85480 * 0.03097 * 5 4 3 31 31 H 1.07995 * 119.93235 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.46991 * 265.08673 * 8 7 6 33 33 H 1.09008 * 109.47331 * 25.08398 * 8 7 6 34 34 H 1.08993 * 109.47421 * 145.08516 * 8 7 6 35 35 H 1.08004 * 120.26454 * 359.97300 * 11 10 9 36 36 H 1.07999 * 120.79474 * 179.97438 * 12 11 10 37 37 H 0.97000 * 120.00139 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.80016 * 180.25078 * 22 13 12 39 39 H 1.08008 * 120.07473 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2014 1.1321 1.1986 6 6 5.5807 1.0222 1.2069 7 6 6.2780 0.9607 0.0181 8 6 7.7797 0.8353 0.0289 9 6 5.5898 1.0207 -1.1949 10 6 6.3316 0.9609 -2.4738 11 6 5.9041 0.0843 -3.4766 12 6 6.5884 0.0292 -4.6577 13 6 7.7165 0.8644 -4.8207 14 6 8.4592 0.8403 -6.0195 15 1 9.5075 1.1001 -6.0107 16 6 7.8375 0.4793 -7.2212 17 7 6.5327 0.4225 -7.2911 18 14 8.8717 0.0790 -8.7244 19 1 9.1838 -1.3728 -8.7382 20 1 8.1176 0.4349 -9.9531 21 1 10.1360 0.8566 -8.6768 22 6 8.0838 1.7261 -3.7675 23 7 7.3934 1.7424 -2.6511 24 6 4.1980 1.1321 -1.1961 25 1 -0.3633 0.5140 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.6599 1.1749 2.1320 31 1 6.1123 0.9800 2.1460 32 1 8.2276 1.8251 -0.0593 33 1 8.0991 0.3740 0.9635 34 1 8.0987 0.2162 -0.8094 35 1 5.0399 -0.5439 -3.3184 36 1 6.2773 -0.6400 -5.4462 37 1 6.1021 0.1728 -8.1237 38 1 8.9410 2.3736 -3.8779 39 1 3.6594 1.1754 -2.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244168009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:51 Heat of formation + Delta-G solvation = -22.849361 kcal Electronic energy + Delta-G solvation = -20965.714865 eV Core-core repulsion = 17836.647091 eV Total energy + Delta-G solvation = -3129.067775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90710 -39.73825 -38.46943 -36.06160 -34.21112 -33.08751 -32.51635 -30.77026 -29.69164 -27.54367 -27.04889 -25.14359 -24.18951 -23.69868 -22.45517 -21.14119 -19.32427 -17.75771 -17.34006 -17.25294 -16.99071 -16.46710 -16.31081 -15.82848 -15.66616 -15.58234 -14.75987 -14.55779 -14.35730 -14.07367 -13.57939 -13.56656 -13.33589 -13.28516 -13.06895 -12.93341 -12.82890 -12.76519 -12.32345 -12.23796 -11.91774 -11.81046 -11.66008 -11.25440 -10.62856 -10.26122 -10.14256 -9.81865 -9.53617 -9.10049 -8.73611 -6.47323 0.19930 0.44211 0.87315 1.07550 1.38289 1.51336 1.52729 2.16047 2.57173 2.78255 3.23356 3.61247 3.77711 3.95262 4.02084 4.15513 4.22468 4.27504 4.43090 4.45341 4.56068 4.59785 4.63094 4.72878 4.78284 4.85953 4.87218 4.90799 4.98512 5.01269 5.13003 5.16939 5.29210 5.40797 5.50592 5.62590 5.78353 5.81032 5.90762 6.01489 6.17135 6.24825 6.44769 6.69546 6.73753 7.65171 8.20019 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.003955 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.253247 B = 7077.493123 C = 8221.389718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.108 3.892 4 C -0.107 4.107 5 C -0.103 4.103 6 C -0.121 4.121 7 C -0.079 4.079 8 C -0.092 4.092 9 C -0.025 4.025 10 C 0.007 3.993 11 C -0.132 4.132 12 C -0.153 4.153 13 C 0.044 3.956 14 C -0.474 4.474 15 H 0.090 0.910 16 C 0.033 3.967 17 N -0.819 5.819 18 Si 0.992 3.008 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.254 1.254 22 C -0.034 4.034 23 N -0.451 5.451 24 C -0.106 4.106 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.293 0.707 38 H 0.140 0.860 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -0.262 11.337 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.032 3.968 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.139 4.139 7 C -0.080 4.080 8 C -0.149 4.149 9 C -0.026 4.026 10 C -0.129 4.129 11 C -0.152 4.152 12 C -0.179 4.179 13 C 0.040 3.960 14 C -0.503 4.503 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.444 5.444 18 Si 0.812 3.188 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.177 1.177 22 C -0.197 4.197 23 N -0.158 5.158 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.323 0.092 11.837 13.919 hybrid contribution -0.151 -0.507 -1.971 2.041 sum -7.474 -0.416 9.866 12.384 Atomic orbital electron populations 1.22947 0.79394 1.03783 1.01051 1.87947 1.21509 1.28260 1.95610 1.21356 0.88558 0.84884 1.01953 1.19657 0.95041 1.02960 0.93011 1.21308 0.94102 0.98999 0.97720 1.21221 0.94354 1.00884 0.97437 1.20268 0.96778 0.98559 0.92346 1.20583 0.90940 1.01900 1.01472 1.18560 0.92560 1.00129 0.91359 1.19227 0.97301 1.01543 0.94872 1.21479 0.99775 0.99734 0.94198 1.21319 0.99074 1.01015 0.96501 1.18878 0.92775 0.89996 0.94357 1.19890 0.98082 1.40306 0.91985 0.89197 1.26927 0.96148 0.91417 1.03837 1.69815 1.11483 1.33133 1.29944 0.85047 0.78829 0.79678 0.75294 1.18570 1.19212 1.17713 1.22730 1.02973 1.02349 0.91658 1.67158 1.04985 1.20246 1.23438 1.21117 0.92906 1.00484 0.98043 0.92275 0.93555 0.88750 0.89900 0.92458 0.83088 0.82995 0.91467 0.89941 0.94397 0.87103 0.86786 0.89586 0.84273 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -10.82 10.69 -148.98 -1.59 -12.41 16 3 C 0.11 2.61 6.06 71.24 0.43 3.04 16 4 C -0.11 -3.21 5.50 -19.90 -0.11 -3.32 16 5 C -0.10 -2.71 9.70 22.34 0.22 -2.50 16 6 C -0.12 -3.39 9.67 22.23 0.21 -3.18 16 7 C -0.08 -2.80 5.91 -19.60 -0.12 -2.92 16 8 C -0.09 -3.14 8.73 71.24 0.62 -2.51 16 9 C -0.03 -1.04 5.60 -20.04 -0.11 -1.16 16 10 C 0.01 0.32 5.45 41.95 0.23 0.54 16 11 C -0.13 -6.51 9.40 22.29 0.21 -6.31 16 12 C -0.15 -8.18 8.71 22.64 0.20 -7.98 16 13 C 0.04 2.39 5.56 -21.17 -0.12 2.27 16 14 C -0.47 -24.52 9.07 23.39 0.21 -24.31 16 15 H 0.09 4.38 7.88 -2.91 -0.02 4.36 16 16 C 0.03 1.60 5.23 85.28 0.45 2.04 16 17 N -0.82 -41.45 10.93 21.84 0.24 -41.22 16 18 Si 0.99 36.28 29.58 68.60 2.03 38.31 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 20 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 21 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 22 C -0.03 -1.75 10.97 85.44 0.94 -0.81 16 23 N -0.45 -22.43 8.75 -182.70 -1.60 -24.03 16 24 C -0.11 -3.95 9.09 22.53 0.20 -3.75 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.50 8.08 -2.39 -0.02 1.49 16 29 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 31 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.17 8.05 -2.38 -0.02 2.15 16 34 H 0.04 1.50 7.00 -2.39 -0.02 1.48 16 35 H 0.11 5.04 7.98 -2.91 -0.02 5.01 16 36 H 0.11 6.22 6.32 -2.91 -0.02 6.20 16 37 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 38 H 0.14 6.56 8.06 -2.91 -0.02 6.54 16 39 H 0.11 4.11 7.99 -2.91 -0.02 4.09 16 Total: -1.00 -62.50 333.36 4.83 -57.67 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 1.04 Total: 30.86 kcal Atomic # 6 Polarization: -53.89 SS G_CDS: 4.71 Total: -49.18 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -1.36 Total: -65.25 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.59 Total: -12.41 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -62.50 4.83 -57.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244168009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.818 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds