Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99891 * 2 1 4 4 C 1.50697 * 109.47266 * 180.02562 * 3 2 1 5 5 C 1.38423 * 119.92355 * 89.99828 * 4 3 2 6 6 C 1.38376 * 120.30536 * 180.02562 * 5 4 3 7 7 C 1.37946 * 120.15235 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.07827 * 179.97438 * 7 6 5 9 9 C 1.39656 * 119.84431 * 359.97423 * 7 6 5 10 10 C 1.47826 * 120.14882 * 180.02562 * 9 7 6 11 11 N 1.32574 * 119.99204 * 308.79998 * 10 9 7 12 12 C 1.31745 * 121.72061 * 180.31815 * 11 10 9 13 13 C 1.38863 * 121.50409 * 359.68942 * 12 11 10 14 14 C 1.36887 * 119.80185 * 0.02562 * 13 12 11 15 15 C 1.41130 * 118.39109 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.71565 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99653 * 154.13539 * 16 15 14 18 18 C 1.40072 * 119.99918 * 333.85332 * 16 15 14 19 19 N 1.30773 * 120.00073 * 343.91608 * 18 16 15 20 20 Si 1.86796 * 119.99710 * 163.90872 * 18 16 15 21 21 H 1.48500 * 109.47113 * 60.00278 * 20 18 16 22 22 H 1.48495 * 109.47176 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47439 * 300.00242 * 20 18 16 24 24 C 1.37904 * 119.92140 * 270.25622 * 4 3 2 25 25 H 1.09001 * 109.46989 * 299.99374 * 1 2 3 26 26 H 1.08993 * 109.47445 * 60.00150 * 1 2 3 27 27 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46759 * 59.99994 * 3 2 1 29 29 H 1.08994 * 109.47008 * 300.00115 * 3 2 1 30 30 H 1.07994 * 119.84833 * 0.02562 * 5 4 3 31 31 H 1.07990 * 119.92536 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.47305 * 267.88588 * 8 7 6 33 33 H 1.09003 * 109.46982 * 27.88516 * 8 7 6 34 34 H 1.09004 * 109.47132 * 147.87622 * 8 7 6 35 35 H 1.08001 * 119.24866 * 179.67061 * 12 11 10 36 36 H 1.08002 * 120.10174 * 179.97438 * 13 12 11 37 37 H 1.07999 * 120.80713 * 179.97438 * 14 13 12 38 38 H 0.97000 * 119.99560 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.08234 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2004 1.1323 -1.2006 6 6 5.5797 1.0225 -1.2104 7 6 6.2788 0.9660 -0.0226 8 6 7.7809 0.8459 -0.0352 9 6 5.5912 1.0203 1.1918 10 6 6.3336 0.9608 2.4687 11 7 7.2150 -0.0071 2.6783 12 6 7.8908 -0.0962 3.8057 13 6 7.7178 0.8250 4.8303 14 6 6.8272 1.8532 4.6774 15 6 6.1058 1.9419 3.4677 16 6 5.1772 2.9806 3.2580 17 1 4.9461 3.3036 2.2538 18 6 4.5495 3.5901 4.3518 19 7 4.5711 3.0112 5.5242 20 14 3.6818 5.2302 4.1358 21 1 2.5960 5.0874 3.1329 22 1 3.1034 5.6590 5.4345 23 1 4.6566 6.2483 3.6684 24 6 4.1983 1.1267 1.1943 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.6580 1.1757 -2.1335 31 1 6.1101 0.9802 -2.1501 32 1 8.0616 -0.2067 -0.0009 33 1 8.1738 1.2972 -0.9463 34 1 8.1939 1.3606 0.8324 35 1 8.5953 -0.9044 3.9361 36 1 8.2835 0.7300 5.7454 37 1 6.6795 2.5785 5.4639 38 1 4.1367 3.4335 6.2817 39 1 3.6601 1.1646 2.1298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244168253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = -6.546181 kcal Electronic energy + Delta-G solvation = -21802.429539 eV Core-core repulsion = 18674.068724 eV Total energy + Delta-G solvation = -3128.360816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.29566 -38.07280 -37.12768 -34.21026 -32.82101 -31.53127 -30.59510 -28.72361 -28.28206 -26.16578 -25.69626 -23.80801 -22.70213 -21.69942 -20.76899 -19.40791 -17.41197 -16.23114 -16.09289 -15.80005 -15.52611 -14.87451 -14.67074 -14.46827 -14.14569 -13.88645 -13.32262 -12.99213 -12.67109 -12.35445 -12.04084 -12.03000 -11.87052 -11.59995 -11.56049 -11.47874 -11.29059 -11.09455 -10.97399 -10.74623 -10.48823 -10.31884 -9.79701 -9.50704 -9.45157 -8.50958 -8.06372 -8.02423 -7.98083 -7.36989 -6.92927 -4.54683 1.82662 2.05931 2.62118 2.93233 2.95594 2.98827 3.15275 3.77402 3.99784 4.50347 4.63690 5.20575 5.24453 5.40256 5.46671 5.50288 5.58396 5.61134 5.63601 5.70186 5.80477 5.91144 6.10064 6.22160 6.29061 6.35287 6.45164 6.58385 6.67976 6.72992 6.83762 6.90984 7.01452 7.02795 7.13329 7.27886 7.33504 7.49472 7.62726 7.71136 7.85312 7.88787 8.35280 8.56927 8.65308 9.57249 9.94781 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.007702 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.558971 B = 3634.646852 C = 5157.360117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.134 4.134 7 C -0.070 4.070 8 C -0.097 4.097 9 C 0.021 3.979 10 C 0.015 3.985 11 N -0.447 5.447 12 C -0.036 4.036 13 C -0.148 4.148 14 C -0.133 4.133 15 C 0.086 3.914 16 C -0.439 4.439 17 H 0.087 0.913 18 C 0.076 3.924 19 N -0.784 5.784 20 Si 0.908 3.092 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.064 4.064 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.285 0.715 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 0.435 -7.015 8.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.032 3.968 4 C -0.112 4.112 5 C -0.132 4.132 6 C -0.152 4.152 7 C -0.071 4.071 8 C -0.154 4.154 9 C 0.021 3.979 10 C -0.124 4.124 11 N -0.154 5.154 12 C -0.197 4.197 13 C -0.169 4.169 14 C -0.158 4.158 15 C 0.081 3.919 16 C -0.468 4.468 17 H 0.105 0.895 18 C -0.144 4.144 19 N -0.408 5.408 20 Si 0.732 3.268 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.083 4.083 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.801 -0.319 -7.390 8.317 hybrid contribution -0.819 1.578 0.900 1.992 sum -4.620 1.259 -6.491 8.066 Atomic orbital electron populations 1.22712 0.81791 1.02409 0.99704 1.88006 1.18927 1.28102 1.95330 1.21322 0.90609 0.84504 1.00338 1.19307 0.93161 1.05055 0.93644 1.20793 0.94094 1.01711 0.96610 1.20739 0.93841 1.03577 0.97018 1.20057 0.96064 0.98739 0.92237 1.20620 0.91485 1.02142 1.01148 1.18288 0.91863 0.96709 0.91080 1.19401 1.01904 0.95504 0.95561 1.67073 1.04629 1.21763 1.21956 1.21645 1.04736 1.01877 0.91443 1.21419 0.99630 0.97233 0.98592 1.21372 0.96097 0.99059 0.99308 1.18323 0.91211 0.91276 0.91057 1.19550 1.19057 1.13817 0.94344 0.89520 1.26003 0.95434 0.98519 0.94463 1.69761 1.33285 1.36347 1.01421 0.86339 0.80102 0.81634 0.78736 1.18589 1.20140 1.18531 1.21188 0.93498 0.96347 0.97269 0.94155 0.94440 0.89917 0.92458 0.93059 0.87131 0.86847 0.91261 0.93320 0.91486 0.86251 0.88434 0.85741 0.90352 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -6.33 10.69 -35.23 -0.38 -6.71 16 3 C 0.11 1.73 6.06 36.00 0.22 1.94 16 4 C -0.11 -2.08 5.50 -104.68 -0.58 -2.66 16 5 C -0.11 -1.94 9.70 -39.46 -0.38 -2.32 16 6 C -0.13 -2.33 9.68 -39.64 -0.38 -2.71 16 7 C -0.07 -1.41 5.91 -104.20 -0.62 -2.02 16 8 C -0.10 -1.78 8.92 36.00 0.32 -1.46 16 9 C 0.02 0.49 5.00 -104.90 -0.52 -0.04 16 10 C 0.01 0.36 5.37 -82.24 -0.44 -0.08 16 11 N -0.45 -10.85 8.96 -9.17 -0.08 -10.93 16 12 C -0.04 -0.83 11.16 -17.36 -0.19 -1.02 16 13 C -0.15 -3.37 10.03 -39.84 -0.40 -3.77 16 14 C -0.13 -3.30 8.74 -38.97 -0.34 -3.64 16 15 C 0.09 2.20 5.56 -106.41 -0.59 1.61 16 16 C -0.44 -10.90 7.24 -37.89 -0.27 -11.18 16 17 H 0.09 2.13 6.68 -52.49 -0.35 1.77 16 18 C 0.08 1.77 5.19 -17.31 -0.09 1.68 16 19 N -0.78 -18.97 11.00 55.55 0.61 -18.36 16 20 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 16 21 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.06 -1.38 7.69 -39.16 -0.30 -1.68 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 34 H 0.07 1.37 6.88 -51.93 -0.36 1.01 16 35 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 36 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.12 3.13 6.32 -52.49 -0.33 2.80 16 38 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 39 H 0.13 2.92 7.44 -52.49 -0.39 2.53 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -27.63 328.96 -8.59 -36.22 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.21 Total: 8.05 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.46 Total: -25.87 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.53 Total: -29.29 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.38 Total: -6.71 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.63 -8.59 -36.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244168253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.675 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds