Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00345 * 2 1 4 4 C 1.50702 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.38417 * 119.92767 * 270.02116 * 4 3 2 6 6 C 1.38374 * 120.29400 * 179.97438 * 5 4 3 7 7 C 1.37953 * 120.14502 * 359.72882 * 6 5 4 8 8 C 1.50699 * 120.07343 * 180.27393 * 7 6 5 9 9 C 1.39598 * 119.85073 * 0.52261 * 7 6 5 10 10 C 1.47974 * 120.14490 * 179.74589 * 9 7 6 11 11 C 1.40265 * 120.34350 * 129.74982 * 10 9 7 12 12 C 1.36693 * 118.60050 * 179.72056 * 11 10 9 13 13 C 1.40869 * 119.25163 * 0.50355 * 12 11 10 14 14 C 1.40995 * 119.67634 * 179.76309 * 13 12 11 15 15 H 1.07993 * 120.00385 * 6.00058 * 14 13 12 16 16 C 1.40109 * 119.99619 * 185.99211 * 14 13 12 17 17 N 1.30706 * 120.00320 * 353.32051 * 16 14 13 18 18 Si 1.86800 * 119.99575 * 173.59592 * 16 14 13 19 19 H 1.48499 * 109.47512 * 94.98900 * 18 16 14 20 20 H 1.48510 * 109.46893 * 214.98665 * 18 16 14 21 21 H 1.48492 * 109.47391 * 334.98487 * 18 16 14 22 22 N 1.33783 * 120.64129 * 359.48599 * 13 12 11 23 23 C 1.31187 * 121.50317 * 0.25799 * 22 13 12 24 24 C 1.37911 * 119.92376 * 90.00009 * 4 3 2 25 25 H 1.09005 * 109.46377 * 59.99916 * 1 2 3 26 26 H 1.08996 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46917 * 300.00525 * 1 2 3 28 28 H 1.09005 * 109.46994 * 59.99942 * 3 2 1 29 29 H 1.08998 * 109.47113 * 299.99652 * 3 2 1 30 30 H 1.07996 * 119.85085 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.92679 * 180.02562 * 6 5 4 32 32 H 1.08994 * 109.47588 * 270.24860 * 8 7 6 33 33 H 1.09002 * 109.47224 * 30.25797 * 8 7 6 34 34 H 1.09004 * 109.46729 * 150.24843 * 8 7 6 35 35 H 1.07997 * 120.69845 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.36968 * 180.26840 * 12 11 10 37 37 H 0.97001 * 120.00002 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.65659 * 179.97438 * 23 22 13 39 39 H 1.07999 * 120.07517 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2005 1.1315 1.2005 6 6 5.5799 1.0216 1.2100 7 6 6.2781 0.9604 0.0218 8 6 7.7798 0.8345 0.0339 9 6 5.5909 1.0204 -1.1919 10 6 6.3338 0.9609 -2.4702 11 6 5.9457 0.0616 -3.4742 12 6 6.6536 0.0406 -4.6433 13 6 7.7512 0.9098 -4.7991 14 6 8.4907 0.8921 -5.9994 15 1 8.1587 0.2863 -6.8294 16 6 9.6564 1.6608 -6.1153 17 7 9.9881 2.4927 -5.1633 18 14 10.7325 1.5021 -7.6339 19 1 10.3646 2.5557 -8.6137 20 1 12.1581 1.6602 -7.2491 21 1 10.5305 0.1645 -8.2463 22 7 8.0951 1.7557 -3.8214 23 6 7.4319 1.8025 -2.6905 24 6 4.1989 1.1317 -1.1943 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8463 -0.8900 30 1 3.6582 1.1739 2.1335 31 1 6.1106 0.9790 2.1496 32 1 8.2277 1.8281 0.0390 33 1 8.0916 0.2908 0.9257 34 1 8.1062 0.2933 -0.8542 35 1 5.1027 -0.5975 -3.3281 36 1 6.3769 -0.6374 -5.4371 37 1 10.7953 3.0246 -5.2434 38 1 7.7359 2.4968 -1.9211 39 1 3.6610 1.1746 -2.1299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244170454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -0.473009 kcal Electronic energy + Delta-G solvation = -20967.602179 eV Core-core repulsion = 17839.504716 eV Total energy + Delta-G solvation = -3128.097463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.42055 -38.11716 -37.34010 -33.95220 -32.94890 -31.64586 -30.51066 -28.89654 -28.58620 -26.38169 -25.64275 -24.02018 -22.47613 -21.79663 -20.88859 -19.62162 -17.55969 -16.43212 -16.13254 -15.99083 -15.61522 -14.89862 -14.73113 -14.42113 -14.22145 -14.04221 -13.34812 -13.12713 -12.69472 -12.44038 -12.24314 -12.13920 -12.03691 -11.78992 -11.58031 -11.37573 -11.24898 -11.15896 -11.04655 -10.74673 -10.58531 -10.30939 -9.95838 -9.73201 -9.45611 -8.59434 -8.29786 -8.16350 -7.62035 -7.32241 -6.52478 -4.59769 1.62687 1.79319 2.69537 3.02810 3.04037 3.06019 3.12874 3.80202 3.85558 4.37644 4.65195 4.98599 5.04525 5.22060 5.27010 5.31774 5.38528 5.47761 5.52352 5.54752 5.80728 5.84283 5.90153 6.00879 6.12563 6.16221 6.19898 6.33624 6.55866 6.63895 6.71334 6.78371 6.84990 6.93851 7.02304 7.10554 7.17814 7.32814 7.41953 7.58400 7.74781 7.96110 8.12404 8.53610 8.82395 10.01545 10.18428 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027426 B = 0.003663 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.688516 B = 7641.810659 C = 8396.422743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.107 3.893 4 C -0.100 4.100 5 C -0.123 4.123 6 C -0.121 4.121 7 C -0.085 4.085 8 C -0.111 4.111 9 C 0.018 3.982 10 C -0.275 4.275 11 C -0.035 4.035 12 C -0.274 4.274 13 C 0.254 3.746 14 C -0.418 4.418 15 H 0.086 0.914 16 C 0.066 3.934 17 N -0.705 5.705 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.260 1.260 22 N -0.489 5.489 23 C 0.156 3.844 24 C -0.103 4.103 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.275 0.725 38 H 0.119 0.881 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 -0.917 8.728 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.101 4.101 5 C -0.142 4.142 6 C -0.139 4.139 7 C -0.086 4.086 8 C -0.168 4.168 9 C 0.017 3.983 10 C -0.280 4.280 11 C -0.058 4.058 12 C -0.296 4.296 13 C 0.131 3.869 14 C -0.448 4.448 15 H 0.104 0.896 16 C -0.161 4.161 17 N -0.325 5.325 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.183 1.183 22 N -0.200 5.200 23 C -0.012 4.012 24 C -0.121 4.121 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.425 -0.383 8.571 12.025 hybrid contribution -0.605 -0.404 -0.434 0.847 sum -9.030 -0.786 8.137 12.181 Atomic orbital electron populations 1.22734 0.81542 1.02593 0.99769 1.88007 1.19123 1.27901 1.95335 1.21329 0.90575 0.84670 1.00316 1.19344 0.93135 1.03834 0.93744 1.20794 0.94130 1.02562 0.96676 1.20824 0.93841 1.02046 0.97234 1.20091 0.96150 0.99993 0.92323 1.20829 0.91423 1.02008 1.02506 1.18748 0.91918 0.95138 0.92473 1.18973 1.04874 1.08861 0.95318 1.20600 0.96764 0.95706 0.92754 1.21404 1.02829 1.06741 0.98648 1.18633 0.88900 0.87211 0.92169 1.19707 1.05335 1.21463 0.98305 0.89609 1.26152 0.98351 0.94004 0.97553 1.70119 1.19841 1.13047 1.29486 0.86282 0.79120 0.79984 0.81350 1.19350 1.19904 1.18347 1.68805 1.28685 1.22375 1.00182 1.22715 0.89570 0.94067 0.94855 1.21144 0.93809 1.00362 0.96792 0.94136 0.89766 0.94309 0.92909 0.92687 0.87010 0.86667 0.91432 0.92679 0.90573 0.88654 0.88265 0.91342 0.86310 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.37 10.69 -35.23 -0.38 -5.74 16 3 C 0.11 1.40 6.06 36.01 0.22 1.62 16 4 C -0.10 -1.58 5.50 -104.67 -0.58 -2.16 16 5 C -0.12 -1.83 9.70 -39.47 -0.38 -2.21 16 6 C -0.12 -1.86 9.69 -39.64 -0.38 -2.24 16 7 C -0.09 -1.49 5.88 -104.22 -0.61 -2.11 16 8 C -0.11 -1.83 8.46 36.01 0.30 -1.52 16 9 C 0.02 0.35 5.49 -104.88 -0.58 -0.22 16 10 C -0.27 -6.09 4.75 -104.45 -0.50 -6.58 16 11 C -0.03 -0.78 9.60 -39.38 -0.38 -1.16 16 12 C -0.27 -6.64 9.76 -39.15 -0.38 -7.02 16 13 C 0.25 6.81 6.54 -84.98 -0.56 6.26 16 14 C -0.42 -10.89 9.11 -37.84 -0.34 -11.24 16 15 H 0.09 2.08 7.86 -52.49 -0.41 1.67 16 16 C 0.07 1.63 5.49 -17.33 -0.10 1.54 16 17 N -0.70 -18.23 11.47 55.56 0.64 -17.59 16 18 Si 0.91 17.99 29.56 -169.99 -5.03 12.96 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 N -0.49 -13.18 7.86 -10.85 -0.09 -13.26 16 23 C 0.16 3.71 9.10 -17.13 -0.16 3.56 16 24 C -0.10 -1.84 9.19 -39.18 -0.36 -2.20 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.07 1.06 7.52 -51.93 -0.39 0.67 16 33 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.08 1.44 6.48 -51.93 -0.34 1.10 16 35 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 38 H 0.12 2.61 6.89 -52.49 -0.36 2.25 16 39 H 0.12 2.05 8.05 -52.49 -0.42 1.63 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -29.00 332.24 -8.78 -37.78 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.28 Total: 5.14 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -3.66 Total: -24.30 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.55 Total: -30.85 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.74 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.00 -8.78 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244170454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.308 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds