Wall clock time and date at job start Tue Mar 31 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00345 * 2 1 4 4 C 1.50702 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.38417 * 119.92767 * 270.02116 * 4 3 2 6 6 C 1.38374 * 120.29400 * 179.97438 * 5 4 3 7 7 C 1.37953 * 120.14502 * 359.72882 * 6 5 4 8 8 C 1.50699 * 120.07343 * 180.27393 * 7 6 5 9 9 C 1.39598 * 119.85073 * 0.52261 * 7 6 5 10 10 C 1.47974 * 120.14490 * 179.74589 * 9 7 6 11 11 C 1.40265 * 120.34350 * 129.74982 * 10 9 7 12 12 C 1.36693 * 118.60050 * 179.72056 * 11 10 9 13 13 C 1.40869 * 119.25163 * 0.50355 * 12 11 10 14 14 C 1.40995 * 119.67634 * 179.76309 * 13 12 11 15 15 H 1.07993 * 120.00385 * 6.00058 * 14 13 12 16 16 C 1.40109 * 119.99619 * 185.99211 * 14 13 12 17 17 N 1.30706 * 120.00320 * 353.32051 * 16 14 13 18 18 Si 1.86800 * 119.99575 * 173.59592 * 16 14 13 19 19 H 1.48499 * 109.47512 * 94.98900 * 18 16 14 20 20 H 1.48510 * 109.46893 * 214.98665 * 18 16 14 21 21 H 1.48492 * 109.47391 * 334.98487 * 18 16 14 22 22 N 1.33783 * 120.64129 * 359.48599 * 13 12 11 23 23 C 1.31187 * 121.50317 * 0.25799 * 22 13 12 24 24 C 1.37911 * 119.92376 * 90.00009 * 4 3 2 25 25 H 1.09005 * 109.46377 * 59.99916 * 1 2 3 26 26 H 1.08996 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46917 * 300.00525 * 1 2 3 28 28 H 1.09005 * 109.46994 * 59.99942 * 3 2 1 29 29 H 1.08998 * 109.47113 * 299.99652 * 3 2 1 30 30 H 1.07996 * 119.85085 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.92679 * 180.02562 * 6 5 4 32 32 H 1.08994 * 109.47588 * 270.24860 * 8 7 6 33 33 H 1.09002 * 109.47224 * 30.25797 * 8 7 6 34 34 H 1.09004 * 109.46729 * 150.24843 * 8 7 6 35 35 H 1.07997 * 120.69845 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.36968 * 180.26840 * 12 11 10 37 37 H 0.97001 * 120.00002 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.65659 * 179.97438 * 23 22 13 39 39 H 1.07999 * 120.07517 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2005 1.1315 1.2005 6 6 5.5799 1.0216 1.2100 7 6 6.2781 0.9604 0.0218 8 6 7.7798 0.8345 0.0339 9 6 5.5909 1.0204 -1.1919 10 6 6.3338 0.9609 -2.4702 11 6 5.9457 0.0616 -3.4742 12 6 6.6536 0.0406 -4.6433 13 6 7.7512 0.9098 -4.7991 14 6 8.4907 0.8921 -5.9994 15 1 8.1587 0.2863 -6.8294 16 6 9.6564 1.6608 -6.1153 17 7 9.9881 2.4927 -5.1633 18 14 10.7325 1.5021 -7.6339 19 1 10.3646 2.5557 -8.6137 20 1 12.1581 1.6602 -7.2491 21 1 10.5305 0.1645 -8.2463 22 7 8.0951 1.7557 -3.8214 23 6 7.4319 1.8025 -2.6905 24 6 4.1989 1.1317 -1.1943 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8463 -0.8900 30 1 3.6582 1.1739 2.1335 31 1 6.1106 0.9790 2.1496 32 1 8.2277 1.8281 0.0390 33 1 8.0916 0.2908 0.9257 34 1 8.1062 0.2933 -0.8542 35 1 5.1027 -0.5975 -3.3281 36 1 6.3769 -0.6374 -5.4371 37 1 10.7953 3.0246 -5.2434 38 1 7.7359 2.4968 -1.9211 39 1 3.6610 1.1746 -2.1299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244170454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:52 Heat of formation + Delta-G solvation = -15.519844 kcal Electronic energy + Delta-G solvation = -20968.254659 eV Core-core repulsion = 17839.504716 eV Total energy + Delta-G solvation = -3128.749943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85432 -39.67416 -38.48168 -35.70658 -34.30114 -33.25393 -32.32345 -30.53327 -29.72211 -27.56437 -27.12269 -25.15768 -24.06672 -23.61686 -22.41010 -21.04017 -19.43381 -17.58189 -17.43256 -17.24487 -16.94966 -16.21666 -16.18015 -15.94942 -15.67233 -15.53508 -14.65453 -14.52304 -14.34805 -14.04612 -13.76183 -13.39696 -13.30131 -13.06026 -12.91399 -12.83087 -12.77293 -12.72416 -12.48266 -12.24181 -11.89289 -11.82285 -11.57283 -11.21646 -10.63224 -10.30094 -9.96502 -9.56631 -9.48623 -9.00268 -8.35443 -6.52146 0.25819 0.46287 0.97621 1.19402 1.40087 1.51872 1.56563 2.20561 2.64715 2.84291 3.26091 3.84731 3.94867 3.97523 4.06190 4.15862 4.17998 4.27779 4.37493 4.43712 4.51992 4.55893 4.61588 4.68757 4.80687 4.85858 4.86779 4.87364 4.90858 5.02184 5.15366 5.22306 5.34109 5.44206 5.55225 5.60393 5.68580 5.83071 5.96626 6.09700 6.19017 6.24184 6.26076 6.66647 6.90977 8.13063 8.38251 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027426 B = 0.003663 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.688516 B = 7641.810659 C = 8396.422743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.108 3.892 4 C -0.105 4.105 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.094 4.094 8 C -0.107 4.107 9 C -0.017 4.017 10 C -0.255 4.255 11 C -0.041 4.041 12 C -0.288 4.288 13 C 0.223 3.777 14 C -0.457 4.457 15 H 0.092 0.908 16 C 0.023 3.977 17 N -0.748 5.748 18 Si 0.990 3.010 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.255 1.255 22 N -0.521 5.521 23 C 0.139 3.861 24 C -0.113 4.113 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.282 0.718 38 H 0.129 0.871 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 -1.128 10.656 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.032 3.968 4 C -0.105 4.105 5 C -0.130 4.130 6 C -0.135 4.135 7 C -0.095 4.095 8 C -0.163 4.163 9 C -0.018 4.018 10 C -0.260 4.260 11 C -0.065 4.065 12 C -0.310 4.310 13 C 0.099 3.901 14 C -0.488 4.488 15 H 0.110 0.890 16 C -0.200 4.200 17 N -0.369 5.369 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.178 1.178 22 N -0.233 5.233 23 C -0.027 4.027 24 C -0.131 4.131 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.147 0.853 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.804 -0.593 10.530 14.400 hybrid contribution -0.418 -0.362 -0.771 0.949 sum -10.222 -0.955 9.758 14.164 Atomic orbital electron populations 1.22948 0.79397 1.03779 1.01046 1.87947 1.21505 1.28289 1.95608 1.21361 0.88727 0.84849 1.01872 1.19689 0.94945 1.02639 0.93207 1.21254 0.94149 0.99987 0.97660 1.21176 0.94298 1.00571 0.97498 1.20250 0.96533 1.00108 0.92570 1.20776 0.91183 1.02120 1.02237 1.18718 0.92699 0.98519 0.91874 1.19234 1.03598 1.06801 0.96364 1.20884 0.97144 0.96030 0.92401 1.21574 1.02750 1.06913 0.99801 1.19049 0.90116 0.88126 0.92828 1.20041 1.06889 1.23169 0.98672 0.89040 1.27077 0.99156 0.92996 1.00793 1.70208 1.20771 1.14149 1.31742 0.85086 0.76988 0.80101 0.76900 1.18600 1.19102 1.17796 1.68730 1.30100 1.23298 1.01198 1.22941 0.90366 0.94876 0.94495 1.21169 0.93201 1.00961 0.97780 0.93431 0.88746 0.92420 0.90228 0.92300 0.83583 0.83393 0.91130 0.89835 0.93873 0.86562 0.87179 0.90739 0.85345 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -10.43 10.69 -148.98 -1.59 -12.02 16 3 C 0.11 2.49 6.06 71.24 0.43 2.92 16 4 C -0.10 -3.03 5.50 -19.90 -0.11 -3.14 16 5 C -0.11 -2.89 9.70 22.34 0.22 -2.68 16 6 C -0.12 -3.19 9.69 22.23 0.22 -2.97 16 7 C -0.09 -3.17 5.88 -19.60 -0.12 -3.29 16 8 C -0.11 -3.43 8.46 71.24 0.60 -2.83 16 9 C -0.02 -0.67 5.49 -20.03 -0.11 -0.78 16 10 C -0.25 -11.59 4.75 -19.75 -0.09 -11.69 16 11 C -0.04 -1.89 9.60 22.40 0.21 -1.68 16 12 C -0.29 -14.54 9.76 22.55 0.22 -14.32 16 13 C 0.22 12.53 6.54 40.17 0.26 12.80 16 14 C -0.46 -24.90 9.11 23.40 0.21 -24.69 16 15 H 0.09 4.63 7.86 -2.91 -0.02 4.61 16 16 C 0.02 1.15 5.49 85.31 0.47 1.61 16 17 N -0.75 -40.24 11.47 21.85 0.25 -39.99 16 18 Si 0.99 37.68 29.56 68.60 2.03 39.71 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 20 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 22 N -0.52 -29.53 7.86 -188.23 -1.48 -31.01 16 23 C 0.14 6.92 9.10 85.24 0.78 7.70 16 24 C -0.11 -3.94 9.19 22.53 0.21 -3.74 16 25 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 29 H 0.06 1.29 8.08 -2.39 -0.02 1.28 16 30 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.07 2.19 7.52 -2.39 -0.02 2.17 16 33 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 34 H 0.04 1.66 6.48 -2.38 -0.02 1.65 16 35 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 37 H 0.28 13.60 8.29 -92.71 -0.77 12.83 16 38 H 0.13 5.91 6.89 -2.91 -0.02 5.89 16 39 H 0.11 3.86 8.05 -2.91 -0.02 3.84 16 Total: -1.00 -65.71 332.24 4.90 -60.81 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 1.04 Total: 27.62 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.65 Total: -45.12 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -1.23 Total: -71.00 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.59 Total: -12.02 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -65.71 4.90 -60.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244170454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.295 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds