Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42911 * 113.99821 * 2 1 4 4 C 1.50695 * 109.46816 * 180.02562 * 3 2 1 5 5 C 1.38424 * 119.92345 * 269.97396 * 4 3 2 6 6 C 1.38390 * 120.30513 * 180.02562 * 5 4 3 7 7 C 1.37939 * 120.14654 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.06897 * 180.27460 * 7 6 5 9 9 C 1.39649 * 119.85180 * 0.02562 * 7 6 5 10 10 C 1.47844 * 120.15216 * 179.97438 * 9 7 6 11 11 C 1.39303 * 120.78111 * 244.72100 * 10 9 7 12 12 N 1.31674 * 120.66260 * 179.67869 * 11 10 9 13 13 C 1.32214 * 122.50146 * 0.63992 * 12 11 10 14 14 C 1.36488 * 121.50372 * 359.65167 * 13 12 11 15 15 C 1.41119 * 119.10947 * 0.02562 * 14 13 12 16 16 C 1.40926 * 121.10704 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99908 * 151.94075 * 16 15 14 18 18 C 1.40181 * 120.00227 * 331.93956 * 16 15 14 19 19 N 1.30679 * 120.00124 * 160.76354 * 18 16 15 20 20 Si 1.86800 * 119.99742 * 340.75684 * 18 16 15 21 21 H 1.48506 * 109.46676 * 95.46338 * 20 18 16 22 22 H 1.48502 * 109.47170 * 215.45738 * 20 18 16 23 23 H 1.48492 * 109.47417 * 335.46087 * 20 18 16 24 24 C 1.37899 * 119.92480 * 90.00274 * 4 3 2 25 25 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46958 * 299.99338 * 1 2 3 27 27 H 1.08992 * 109.47694 * 59.99511 * 1 2 3 28 28 H 1.08993 * 109.46811 * 60.00231 * 3 2 1 29 29 H 1.09000 * 109.47009 * 300.00466 * 3 2 1 30 30 H 1.08002 * 119.84793 * 0.05523 * 5 4 3 31 31 H 1.07998 * 119.92503 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47293 * 269.71809 * 8 7 6 33 33 H 1.08997 * 109.47761 * 29.72684 * 8 7 6 34 34 H 1.09002 * 109.46645 * 149.73027 * 8 7 6 35 35 H 1.08001 * 119.66853 * 359.97438 * 11 10 9 36 36 H 1.07994 * 119.24475 * 179.67149 * 13 12 11 37 37 H 1.08002 * 120.44756 * 180.02562 * 14 13 12 38 38 H 0.96995 * 120.00221 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.07694 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2013 1.1323 1.1988 6 6 5.5809 1.0236 1.2074 7 6 6.2790 0.9690 0.0189 8 6 7.7808 0.8443 0.0304 9 6 5.5905 1.0242 -1.1948 10 6 6.3320 0.9668 -2.4725 11 6 6.3344 2.0529 -3.3448 12 7 7.0008 2.0016 -4.4793 13 6 7.6826 0.9329 -4.8550 14 6 7.7402 -0.1865 -4.0762 15 6 7.0549 -0.2006 -2.8426 16 6 7.0863 -1.3337 -2.0052 17 1 6.9771 -1.2187 -0.9369 18 6 7.2593 -2.6099 -2.5588 19 7 7.6609 -3.5997 -1.8061 20 14 6.9154 -2.8956 -4.3725 21 1 8.1829 -2.7898 -5.1392 22 1 6.3356 -4.2499 -4.5591 23 1 5.9546 -1.8742 -4.8611 24 6 4.1978 1.1325 -1.1961 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8465 -0.8899 30 1 3.6597 1.1746 2.1322 31 1 6.1122 0.9814 2.1468 32 1 8.2280 1.8384 0.0310 33 1 8.0939 0.3045 0.9240 34 1 8.1069 0.2999 -0.8559 35 1 5.7880 2.9478 -3.0858 36 1 8.2062 0.9462 -5.7994 37 1 8.3028 -1.0499 -4.3996 38 1 7.7802 -4.4828 -2.1890 39 1 3.6591 1.1749 -2.1312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244170744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = -2.942781 kcal Electronic energy + Delta-G solvation = -21808.904825 eV Core-core repulsion = 18680.700265 eV Total energy + Delta-G solvation = -3128.204561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.47479 -38.29095 -37.27957 -34.26122 -33.01229 -31.73987 -31.07023 -28.59871 -28.44225 -26.37105 -25.76959 -23.86359 -23.03037 -21.60179 -20.98737 -19.47442 -17.82752 -16.34801 -16.17051 -15.86935 -15.68389 -14.93617 -14.73526 -14.45289 -14.30079 -14.22117 -13.47624 -13.17822 -12.78628 -12.63530 -12.58311 -12.21726 -12.07025 -11.71193 -11.61145 -11.40344 -11.13299 -11.09050 -10.94833 -10.67016 -10.43622 -10.38772 -9.76264 -9.61628 -9.41218 -8.52013 -8.27859 -8.12526 -7.95967 -7.46335 -7.15826 -4.76598 1.77625 1.94239 2.46956 2.58726 3.01896 3.12382 3.23039 3.84100 3.89195 4.45655 4.53919 5.09142 5.13213 5.29499 5.32857 5.39048 5.41463 5.53425 5.54079 5.62235 5.63751 5.70615 5.97955 6.04395 6.06729 6.30193 6.33829 6.42456 6.50071 6.58021 6.65986 6.88313 6.92215 6.98498 7.03639 7.13409 7.15967 7.24362 7.40061 7.52180 7.69058 7.89325 8.17270 8.40046 8.57527 9.35677 9.83099 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.006133 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.546009 B = 4564.594266 C = 4895.787710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.109 3.891 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.060 4.060 8 C -0.127 4.127 9 C 0.017 3.983 10 C -0.216 4.216 11 C 0.135 3.865 12 N -0.581 5.581 13 C 0.115 3.885 14 C -0.286 4.286 15 C 0.121 3.879 16 C -0.426 4.426 17 H 0.108 0.892 18 C 0.088 3.912 19 N -0.783 5.783 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.245 1.245 24 C -0.092 4.092 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.290 0.710 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.376 5.218 3.801 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.033 3.967 4 C -0.107 4.107 5 C -0.132 4.132 6 C -0.145 4.145 7 C -0.060 4.060 8 C -0.183 4.183 9 C 0.016 3.984 10 C -0.221 4.221 11 C -0.020 4.020 12 N -0.295 5.295 13 C -0.036 4.036 14 C -0.308 4.308 15 C 0.113 3.887 16 C -0.454 4.454 17 H 0.126 0.874 18 C -0.135 4.135 19 N -0.406 5.406 20 Si 0.738 3.262 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.168 1.168 24 C -0.110 4.110 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.186 5.512 3.323 9.647 hybrid contribution -0.331 -1.007 -0.082 1.063 sum -7.517 4.505 3.242 9.344 Atomic orbital electron populations 1.22724 0.81706 1.02588 0.99607 1.88055 1.18971 1.27829 1.95284 1.21309 0.90601 0.84702 1.00109 1.19290 0.93099 1.04603 0.93700 1.20814 0.94119 1.01579 0.96653 1.20845 0.93846 1.02475 0.97341 1.20094 0.96262 0.97555 0.92127 1.21087 0.91305 1.01414 1.04487 1.18447 0.91766 0.96088 0.92095 1.19409 1.07454 0.98184 0.97078 1.22154 0.94796 0.95663 0.89394 1.67401 1.15020 1.28473 1.18633 1.21642 0.95039 0.89399 0.97477 1.21601 1.09018 1.00277 0.99941 1.17762 0.87694 0.92446 0.90786 1.19728 1.39290 0.89120 0.97299 0.87412 1.26295 0.90457 0.95806 1.00988 1.69616 1.28821 1.02761 1.39360 0.86300 0.80477 0.77830 0.81602 1.19282 1.21509 1.16806 1.21092 0.93466 0.99654 0.96798 0.89791 0.94386 0.94238 0.92995 0.92822 0.87031 0.86677 0.92483 0.92539 0.88214 0.85724 0.86017 0.87471 0.89934 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.99 10.69 -35.23 -0.38 -6.37 16 3 C 0.11 1.54 6.06 36.00 0.22 1.76 16 4 C -0.11 -1.83 5.50 -104.68 -0.58 -2.41 16 5 C -0.11 -1.87 9.70 -39.46 -0.38 -2.25 16 6 C -0.13 -2.20 9.69 -39.63 -0.38 -2.59 16 7 C -0.06 -1.18 4.99 -104.20 -0.52 -1.70 16 8 C -0.13 -2.42 8.76 36.01 0.32 -2.10 16 9 C 0.02 0.35 4.75 -104.90 -0.50 -0.15 16 10 C -0.22 -4.88 4.68 -104.04 -0.49 -5.37 16 11 C 0.13 2.93 10.92 -17.22 -0.19 2.74 16 12 N -0.58 -13.13 10.32 -13.37 -0.14 -13.27 16 13 C 0.11 2.53 11.09 -18.02 -0.20 2.33 16 14 C -0.29 -6.68 7.26 -39.12 -0.28 -6.96 16 15 C 0.12 2.94 4.13 -106.26 -0.44 2.50 16 16 C -0.43 -10.81 7.76 -37.84 -0.29 -11.11 16 17 H 0.11 2.86 5.46 -52.48 -0.29 2.57 16 18 C 0.09 2.19 5.42 -17.31 -0.09 2.09 16 19 N -0.78 -19.74 13.92 55.56 0.77 -18.96 16 20 Si 0.91 20.13 24.53 -169.99 -4.17 15.96 16 21 H -0.27 -5.64 6.69 56.52 0.38 -5.26 16 22 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.24 -5.68 6.87 56.52 0.39 -5.29 16 24 C -0.09 -1.76 9.40 -39.16 -0.37 -2.13 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.10 2.19 4.27 -51.93 -0.22 1.97 16 35 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 36 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.11 2.45 4.68 -52.49 -0.25 2.20 16 38 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 39 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -27.98 321.03 -7.13 -35.12 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.99 Total: 6.57 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.07 Total: -23.88 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.64 Total: -32.23 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.38 Total: -6.37 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.17 Total: 15.96 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.98 -7.13 -35.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244170744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.173 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds