Wall clock time and date at job start Tue Mar 31 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00170 * 2 1 4 4 C 1.50705 * 109.47318 * 180.02562 * 3 2 1 5 5 C 1.38425 * 119.91913 * 269.97704 * 4 3 2 6 6 C 1.38390 * 120.30814 * 179.97438 * 5 4 3 7 7 C 1.37936 * 120.14928 * 359.74157 * 6 5 4 8 8 C 1.50695 * 120.07467 * 180.25555 * 7 6 5 9 9 C 1.39670 * 119.84229 * 0.53514 * 7 6 5 10 10 C 1.47818 * 120.14590 * 179.74765 * 9 7 6 11 11 C 1.39684 * 120.64682 * 244.69459 * 10 9 7 12 12 C 1.38394 * 118.47319 * 180.02562 * 11 10 9 13 13 C 1.39054 * 119.72705 * 359.97438 * 12 11 10 14 14 N 1.31284 * 121.33873 * 0.02562 * 13 12 11 15 15 C 1.33693 * 121.63692 * 359.97438 * 14 13 12 16 16 C 1.40820 * 119.94020 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00253 * 179.97438 * 16 15 14 18 18 C 1.40151 * 119.99826 * 0.02562 * 16 15 14 19 19 N 1.30699 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47222 * 59.99703 * 20 18 16 22 22 H 1.48502 * 109.47349 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47118 * 299.99709 * 20 18 16 24 24 C 1.37887 * 119.92646 * 89.99558 * 4 3 2 25 25 H 1.09001 * 109.47144 * 60.00112 * 1 2 3 26 26 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46963 * 299.99951 * 1 2 3 28 28 H 1.08995 * 109.47147 * 60.00309 * 3 2 1 29 29 H 1.08999 * 109.47067 * 300.00231 * 3 2 1 30 30 H 1.08007 * 119.84967 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.92529 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46944 * 270.27615 * 8 7 6 33 33 H 1.08992 * 109.47433 * 30.27721 * 8 7 6 34 34 H 1.09001 * 109.46867 * 150.28236 * 8 7 6 35 35 H 1.07995 * 120.76123 * 0.04570 * 11 10 9 36 36 H 1.07996 * 120.13652 * 180.02562 * 12 11 10 37 37 H 1.08007 * 119.33144 * 180.28253 * 13 12 11 38 38 H 0.96997 * 120.00579 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.07781 * 0.02822 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2014 1.1322 1.1988 6 6 5.5809 1.0224 1.2077 7 6 6.2786 0.9609 0.0193 8 6 7.7803 0.8356 0.0309 9 6 5.5904 1.0210 -1.1946 10 6 6.3318 0.9613 -2.4720 11 6 6.3375 2.0528 -3.3437 12 6 7.0460 1.9478 -4.5278 13 6 7.7293 0.7726 -4.8206 14 7 7.7179 -0.2478 -3.9947 15 6 7.0513 -0.2051 -2.8365 16 6 7.0629 -1.3209 -1.9775 17 1 6.5251 -1.2873 -1.0415 18 6 7.7730 -2.4745 -2.3367 19 7 8.4242 -2.5149 -3.4692 20 14 7.7890 -3.9543 -1.1969 21 1 6.3995 -4.4372 -0.9932 22 1 8.6050 -5.0370 -1.8028 23 1 8.3746 -3.5653 0.1112 24 6 4.1978 1.1323 -1.1959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6596 1.1750 2.1322 31 1 6.1121 0.9810 2.1471 32 1 8.2278 1.8295 0.0359 33 1 8.0926 0.2921 0.9225 34 1 8.1065 0.2947 -0.8574 35 1 5.8015 2.9578 -3.0990 36 1 7.0689 2.7755 -5.2212 37 1 8.2840 0.6993 -5.7445 38 1 8.9155 -3.3134 -3.7180 39 1 3.6592 1.1755 -2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244172882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:58 Heat of formation + Delta-G solvation = 4.866111 kcal Electronic energy + Delta-G solvation = -21772.860057 eV Core-core repulsion = 18644.994115 eV Total energy + Delta-G solvation = -3127.865942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.33597 -38.03614 -37.17134 -33.77030 -32.96129 -31.67920 -30.27635 -28.55871 -28.42694 -26.28812 -25.57534 -23.83845 -22.85107 -21.37131 -20.86708 -19.40936 -17.49993 -16.32454 -16.03221 -15.82286 -15.57089 -14.72618 -14.56850 -14.47270 -14.20737 -13.98428 -13.23289 -12.85059 -12.63250 -12.43074 -12.11424 -12.05558 -11.89335 -11.62734 -11.36386 -11.19533 -11.16153 -11.09796 -10.97948 -10.50416 -10.40808 -10.30406 -9.87953 -9.61707 -9.37791 -8.41366 -8.12857 -7.96924 -7.59054 -7.29789 -6.46512 -4.55817 1.83114 1.99399 2.72109 2.97681 3.06587 3.10616 3.21600 3.90778 3.92110 4.55006 4.70255 5.10172 5.15729 5.32642 5.37955 5.42731 5.55547 5.60800 5.63144 5.74955 5.83978 6.00516 6.08420 6.10848 6.21303 6.36434 6.42101 6.51786 6.59247 6.72571 6.83350 6.97962 7.03363 7.09950 7.13702 7.23650 7.30859 7.42032 7.53279 7.67544 7.76406 8.00552 8.22127 8.58545 8.87904 10.04664 10.23344 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.006305 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.562312 B = 4439.777557 C = 5200.953114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.109 3.891 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.130 4.130 7 C -0.061 4.061 8 C -0.126 4.126 9 C 0.021 3.979 10 C -0.232 4.232 11 C -0.036 4.036 12 C -0.321 4.321 13 C 0.130 3.870 14 N -0.483 5.483 15 C 0.270 3.730 16 C -0.414 4.414 17 H 0.090 0.910 18 C 0.069 3.931 19 N -0.708 5.708 20 Si 0.901 3.099 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.096 4.096 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 4.771 6.543 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.033 3.967 4 C -0.108 4.108 5 C -0.136 4.136 6 C -0.148 4.148 7 C -0.061 4.061 8 C -0.182 4.182 9 C 0.021 3.979 10 C -0.237 4.237 11 C -0.060 4.060 12 C -0.344 4.344 13 C -0.038 4.038 14 N -0.194 5.194 15 C 0.146 3.854 16 C -0.444 4.444 17 H 0.108 0.892 18 C -0.158 4.158 19 N -0.329 5.329 20 Si 0.725 3.275 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.114 4.114 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.011 3.654 6.230 10.065 hybrid contribution -0.777 0.411 0.620 1.076 sum -7.788 4.065 6.849 11.139 Atomic orbital electron populations 1.22722 0.81724 1.02572 0.99604 1.88045 1.18960 1.27876 1.95282 1.21307 0.90672 0.84662 1.00040 1.19293 0.93033 1.04703 0.93740 1.20791 0.94129 1.02078 0.96578 1.20853 0.93832 1.02759 0.97347 1.20131 0.96368 0.97597 0.92041 1.21065 0.91221 1.01344 1.04570 1.18571 0.91669 0.95212 0.92478 1.19291 1.10349 0.97772 0.96280 1.20839 0.96054 0.95884 0.93218 1.21191 1.11927 1.00692 1.00621 1.22580 0.94391 0.89433 0.97412 1.68769 1.20890 1.26203 1.03567 1.18473 0.87139 0.90351 0.89412 1.19640 1.24926 0.95825 1.04010 0.89232 1.26121 0.94235 1.00071 0.95325 1.70103 1.17634 1.27076 1.18065 0.86461 0.79646 0.80339 0.81064 1.18678 1.20116 1.18628 1.21137 0.93673 0.99941 0.96685 0.94237 0.89794 0.94408 0.93051 0.92887 0.87133 0.86757 0.92659 0.92848 0.87827 0.88748 0.88808 0.86478 0.91392 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.99 10.69 -35.23 -0.38 -6.37 16 3 C 0.11 1.57 6.06 36.01 0.22 1.79 16 4 C -0.11 -1.87 5.50 -104.68 -0.58 -2.44 16 5 C -0.12 -1.94 9.70 -39.46 -0.38 -2.33 16 6 C -0.13 -2.26 9.69 -39.64 -0.38 -2.64 16 7 C -0.06 -1.22 4.86 -104.20 -0.51 -1.73 16 8 C -0.13 -2.45 9.16 36.00 0.33 -2.12 16 9 C 0.02 0.46 4.48 -104.90 -0.47 -0.01 16 10 C -0.23 -5.52 4.68 -104.07 -0.49 -6.00 16 11 C -0.04 -0.79 9.88 -38.98 -0.39 -1.18 16 12 C -0.32 -7.09 10.10 -39.22 -0.40 -7.48 16 13 C 0.13 3.09 11.17 -17.48 -0.20 2.90 16 14 N -0.48 -13.00 7.85 -10.91 -0.09 -13.08 16 15 C 0.27 7.10 5.54 -84.71 -0.47 6.64 16 16 C -0.41 -10.74 6.77 -37.89 -0.26 -11.00 16 17 H 0.09 2.28 5.88 -52.49 -0.31 1.98 16 18 C 0.07 1.73 5.50 -17.32 -0.10 1.63 16 19 N -0.71 -18.42 11.46 55.56 0.64 -17.78 16 20 Si 0.90 18.69 29.56 -169.99 -5.02 13.67 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.10 -1.89 9.40 -39.16 -0.37 -2.26 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.10 2.36 4.31 -51.93 -0.22 2.14 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 38 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 39 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -29.05 328.02 -8.37 -37.42 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.15 Total: 5.99 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -3.31 Total: -24.80 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.55 Total: -30.86 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.38 Total: -6.37 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.05 -8.37 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244172882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.290 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds