Wall clock time and date at job start Tue Mar 31 2020 05:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00170 * 2 1 4 4 C 1.50705 * 109.47318 * 180.02562 * 3 2 1 5 5 C 1.38425 * 119.91913 * 269.97704 * 4 3 2 6 6 C 1.38390 * 120.30814 * 179.97438 * 5 4 3 7 7 C 1.37936 * 120.14928 * 359.74157 * 6 5 4 8 8 C 1.50695 * 120.07467 * 180.25555 * 7 6 5 9 9 C 1.39670 * 119.84229 * 0.53514 * 7 6 5 10 10 C 1.47818 * 120.14590 * 179.74765 * 9 7 6 11 11 C 1.39684 * 120.64682 * 244.69459 * 10 9 7 12 12 C 1.38394 * 118.47319 * 180.02562 * 11 10 9 13 13 C 1.39054 * 119.72705 * 359.97438 * 12 11 10 14 14 N 1.31284 * 121.33873 * 0.02562 * 13 12 11 15 15 C 1.33693 * 121.63692 * 359.97438 * 14 13 12 16 16 C 1.40820 * 119.94020 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00253 * 179.97438 * 16 15 14 18 18 C 1.40151 * 119.99826 * 0.02562 * 16 15 14 19 19 N 1.30699 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47222 * 59.99703 * 20 18 16 22 22 H 1.48502 * 109.47349 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47118 * 299.99709 * 20 18 16 24 24 C 1.37887 * 119.92646 * 89.99558 * 4 3 2 25 25 H 1.09001 * 109.47144 * 60.00112 * 1 2 3 26 26 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46963 * 299.99951 * 1 2 3 28 28 H 1.08995 * 109.47147 * 60.00309 * 3 2 1 29 29 H 1.08999 * 109.47067 * 300.00231 * 3 2 1 30 30 H 1.08007 * 119.84967 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.92529 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46944 * 270.27615 * 8 7 6 33 33 H 1.08992 * 109.47433 * 30.27721 * 8 7 6 34 34 H 1.09001 * 109.46867 * 150.28236 * 8 7 6 35 35 H 1.07995 * 120.76123 * 0.04570 * 11 10 9 36 36 H 1.07996 * 120.13652 * 180.02562 * 12 11 10 37 37 H 1.08007 * 119.33144 * 180.28253 * 13 12 11 38 38 H 0.96997 * 120.00579 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.07781 * 0.02822 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2014 1.1322 1.1988 6 6 5.5809 1.0224 1.2077 7 6 6.2786 0.9609 0.0193 8 6 7.7803 0.8356 0.0309 9 6 5.5904 1.0210 -1.1946 10 6 6.3318 0.9613 -2.4720 11 6 6.3375 2.0528 -3.3437 12 6 7.0460 1.9478 -4.5278 13 6 7.7293 0.7726 -4.8206 14 7 7.7179 -0.2478 -3.9947 15 6 7.0513 -0.2051 -2.8365 16 6 7.0629 -1.3209 -1.9775 17 1 6.5251 -1.2873 -1.0415 18 6 7.7730 -2.4745 -2.3367 19 7 8.4242 -2.5149 -3.4692 20 14 7.7890 -3.9543 -1.1969 21 1 6.3995 -4.4372 -0.9932 22 1 8.6050 -5.0370 -1.8028 23 1 8.3746 -3.5653 0.1112 24 6 4.1978 1.1323 -1.1959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6596 1.1750 2.1322 31 1 6.1121 0.9810 2.1471 32 1 8.2278 1.8295 0.0359 33 1 8.0926 0.2921 0.9225 34 1 8.1065 0.2947 -0.8574 35 1 5.8015 2.9578 -3.0990 36 1 7.0689 2.7755 -5.2212 37 1 8.2840 0.6993 -5.7445 38 1 8.9155 -3.3134 -3.7180 39 1 3.6592 1.1755 -2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244172882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:57 Heat of formation + Delta-G solvation = -10.350067 kcal Electronic energy + Delta-G solvation = -21773.519880 eV Core-core repulsion = 18644.994115 eV Total energy + Delta-G solvation = -3128.525765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86116 -39.56739 -38.42565 -35.59426 -34.42772 -33.25686 -32.08460 -30.20064 -29.68630 -27.63714 -27.06365 -25.12615 -24.44051 -23.20739 -22.39432 -20.90568 -19.36461 -17.62104 -17.31728 -17.16567 -16.95163 -16.22508 -16.12349 -16.02646 -15.72544 -15.40997 -14.65397 -14.40549 -14.28272 -14.05715 -13.67795 -13.29126 -13.24073 -12.96418 -12.90748 -12.85265 -12.75267 -12.68427 -12.29419 -12.18841 -11.91971 -11.76479 -11.52719 -11.18667 -10.61758 -10.15422 -9.76277 -9.50168 -9.44484 -8.97609 -8.29810 -6.45642 0.39808 0.53775 0.94943 1.19779 1.37389 1.48051 1.52951 2.20321 2.70340 2.84584 3.31787 3.88733 3.98564 4.02073 4.13480 4.22167 4.30692 4.34340 4.44105 4.45829 4.54921 4.56890 4.63738 4.76184 4.80704 4.86442 4.89050 4.93437 5.00433 5.13081 5.21577 5.27785 5.44925 5.54498 5.62490 5.69569 5.74701 5.86978 6.04024 6.17580 6.24800 6.28659 6.33099 6.72914 7.00303 8.19246 8.42157 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.006305 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.562312 B = 4439.777557 C = 5200.953114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.110 3.890 4 C -0.109 4.109 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.009 4.009 10 C -0.231 4.231 11 C -0.049 4.049 12 C -0.312 4.312 13 C 0.106 3.894 14 N -0.521 5.521 15 C 0.244 3.756 16 C -0.436 4.436 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.748 5.748 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.265 1.265 23 H -0.254 1.254 24 C -0.111 4.111 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.279 0.721 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 5.477 8.759 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.034 3.966 4 C -0.109 4.109 5 C -0.128 4.128 6 C -0.145 4.145 7 C -0.079 4.079 8 C -0.177 4.177 9 C -0.010 4.010 10 C -0.236 4.236 11 C -0.073 4.073 12 C -0.334 4.334 13 C -0.060 4.060 14 N -0.233 5.233 15 C 0.120 3.880 16 C -0.467 4.467 17 H 0.103 0.897 18 C -0.195 4.195 19 N -0.370 5.370 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.189 1.189 23 H -0.177 1.177 24 C -0.129 4.129 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.643 4.389 8.426 12.844 hybrid contribution -0.383 0.343 -0.069 0.519 sum -9.026 4.732 8.357 13.179 Atomic orbital electron populations 1.22942 0.79399 1.03682 1.01121 1.87977 1.21570 1.28565 1.95607 1.21360 0.88573 0.84720 1.01925 1.19666 0.95018 1.03104 0.93093 1.21226 0.93955 0.99968 0.97682 1.21184 0.94482 1.01380 0.97446 1.20241 0.96466 0.98618 0.92594 1.20952 0.91581 1.01495 1.03623 1.18617 0.92504 0.97758 0.92124 1.19598 1.09335 0.97191 0.97485 1.21203 0.96324 0.96518 0.93227 1.21524 1.10235 1.00798 1.00887 1.22994 0.95261 0.89777 0.97937 1.68692 1.22161 1.27926 1.04549 1.18830 0.87915 0.91607 0.89653 1.19726 1.26092 0.96733 1.04140 0.89700 1.26907 0.93486 1.02440 0.96632 1.70191 1.18884 1.28108 1.19792 0.85469 0.79422 0.76988 0.79304 1.18987 1.18927 1.17743 1.21171 0.93107 1.00993 0.97679 0.93306 0.89020 0.92242 0.90053 0.92110 0.83576 0.83814 0.91874 0.90978 0.91471 0.86323 0.85667 0.84627 0.90988 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -12.09 10.69 -148.98 -1.59 -13.68 16 3 C 0.11 2.84 6.06 71.24 0.43 3.27 16 4 C -0.11 -3.55 5.50 -19.90 -0.11 -3.66 16 5 C -0.11 -3.28 9.70 22.35 0.22 -3.07 16 6 C -0.13 -4.09 9.69 22.23 0.22 -3.87 16 7 C -0.08 -3.11 4.86 -19.59 -0.10 -3.20 16 8 C -0.12 -4.70 9.16 71.23 0.65 -4.05 16 9 C -0.01 -0.40 4.48 -20.04 -0.09 -0.49 16 10 C -0.23 -11.29 4.68 -19.51 -0.09 -11.38 16 11 C -0.05 -2.17 9.88 22.66 0.22 -1.95 16 12 C -0.31 -13.68 10.10 22.50 0.23 -13.45 16 13 C 0.11 5.17 11.17 84.97 0.95 6.12 16 14 N -0.52 -29.20 7.85 -188.43 -1.48 -30.67 16 15 C 0.24 13.38 5.54 40.38 0.22 13.61 16 16 C -0.44 -23.54 6.77 23.37 0.16 -23.38 16 17 H 0.08 4.49 5.88 -2.91 -0.02 4.48 16 18 C 0.03 1.44 5.50 85.33 0.47 1.91 16 19 N -0.75 -40.44 11.46 21.86 0.25 -40.19 16 20 Si 0.97 39.06 29.56 68.60 2.03 41.09 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 24 C -0.11 -4.35 9.40 22.54 0.21 -4.14 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 1.60 8.08 -2.39 -0.02 1.59 16 29 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 30 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 34 H 0.07 3.17 4.31 -2.39 -0.01 3.16 16 35 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.14 5.84 8.06 -2.91 -0.02 5.82 16 38 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 39 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -65.38 328.02 5.10 -60.29 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 1.05 Total: 29.17 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 4.84 Total: -46.01 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.23 Total: -70.86 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.59 Total: -13.68 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -65.38 5.10 -60.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244172882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.936 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds