Wall clock time and date at job start Tue Mar 31 2020 05:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86799 * 120.00440 * 2 1 4 4 H 1.48502 * 109.47255 * 275.38426 * 3 2 1 5 5 H 1.48499 * 109.46781 * 35.37562 * 3 2 1 6 6 H 1.48492 * 109.47321 * 155.37689 * 3 2 1 7 7 C 1.40074 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00413 * 342.41578 * 7 2 1 9 9 C 1.40885 * 119.99873 * 162.41816 * 7 2 1 10 10 C 1.40752 * 120.33268 * 329.52570 * 9 7 2 11 11 C 1.36431 * 119.98652 * 180.28081 * 10 9 7 12 12 C 1.38925 * 120.68825 * 359.73808 * 11 10 9 13 13 C 1.38091 * 120.66729 * 0.02562 * 12 11 10 14 14 C 1.39152 * 119.98792 * 359.97438 * 13 12 11 15 15 C 1.47882 * 120.33337 * 179.97438 * 14 13 12 16 16 C 1.39695 * 120.12429 * 129.99923 * 15 14 13 17 17 C 1.37926 * 119.96406 * 179.97438 * 16 15 14 18 18 C 1.38323 * 120.20710 * 0.02562 * 17 16 15 19 19 C 1.38862 * 120.24825 * 359.97438 * 18 17 16 20 20 O 1.35904 * 119.99031 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99422 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47053 * 180.02562 * 21 20 19 23 23 N 1.46895 * 109.47341 * 65.00106 * 22 21 20 24 24 C 1.38459 * 120.03146 * 0.27414 * 19 18 17 25 25 H 0.97001 * 119.99238 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00486 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.65653 * 179.77166 * 11 10 9 28 28 H 1.08002 * 119.66472 * 180.02562 * 12 11 10 29 29 H 1.08003 * 120.00315 * 179.97438 * 13 12 11 30 30 H 1.08003 * 120.01388 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.89828 * 180.02562 * 17 16 15 32 32 H 1.08003 * 119.87944 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.47261 * 59.99568 * 21 20 19 34 34 H 1.09000 * 109.47107 * 299.99888 * 21 20 19 35 35 H 1.09002 * 109.47208 * 185.00484 * 22 21 20 36 36 H 1.09002 * 109.47280 * 304.99565 * 22 21 20 37 37 H 1.00898 * 110.99965 * 180.02562 * 23 22 21 38 38 H 1.00904 * 111.00030 * 303.95044 * 23 22 21 39 39 H 1.08003 * 120.09994 * 179.72801 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3756 2.1121 -1.3939 5 1 1.5007 2.6171 0.8106 6 1 3.5915 1.4099 0.5833 7 6 2.0080 -1.2131 -0.0005 8 1 1.5059 -2.1267 0.2816 9 6 3.3675 -1.2414 -0.3691 10 6 3.8711 -0.3137 -1.3001 11 6 5.1876 -0.3511 -1.6563 12 6 6.0446 -1.2953 -1.1049 13 6 5.5812 -2.2155 -0.1855 14 6 4.2435 -2.2025 0.1978 15 6 3.7389 -3.1847 1.1814 16 6 2.9926 -2.7553 2.2815 17 6 2.5232 -3.6743 3.1966 18 6 2.7893 -5.0213 3.0293 19 6 3.5303 -5.4578 1.9390 20 8 3.7892 -6.7825 1.7801 21 6 3.2677 -7.6689 2.7722 22 6 3.6586 -9.1073 2.4271 23 7 5.1184 -9.2505 2.5067 24 6 4.0109 -4.5435 1.0170 25 1 -0.4849 0.8401 -0.0004 26 1 3.2145 0.4251 -1.7355 27 1 5.5675 0.3610 -2.3739 28 1 7.0839 -1.3098 -1.3984 29 1 6.2568 -2.9451 0.2361 30 1 2.7827 -1.7043 2.4148 31 1 1.9459 -3.3411 4.0464 32 1 2.4195 -5.7363 3.7493 33 1 2.1813 -7.5840 2.8005 34 1 3.6782 -7.4051 3.7469 35 1 3.1874 -9.7912 3.1330 36 1 3.3250 -9.3419 1.4163 37 1 5.4020 -10.1925 2.2825 38 1 5.5805 -8.5820 1.9086 39 1 4.5910 -4.8813 0.1710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244324329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:48 Heat of formation + Delta-G solvation = -2.705032 kcal Electronic energy + Delta-G solvation = -21255.280310 eV Core-core repulsion = 18127.086059 eV Total energy + Delta-G solvation = -3128.194251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.72292 -38.22792 -36.69204 -34.60490 -33.70820 -31.65460 -30.59574 -29.78501 -28.03926 -27.93609 -25.23701 -23.10652 -22.19200 -21.40745 -20.94010 -19.67807 -17.71328 -17.39716 -16.34370 -15.85096 -15.68336 -15.48665 -15.09939 -14.57657 -14.26260 -14.01364 -13.74062 -13.49656 -13.12503 -12.77783 -12.54562 -12.31712 -12.07163 -11.91909 -11.72792 -11.46894 -11.08773 -10.89337 -10.73282 -10.69069 -10.45002 -10.25834 -9.81328 -9.62146 -9.21416 -8.93076 -8.44883 -7.76542 -7.62414 -7.32411 -7.01764 -4.51897 1.77022 2.11526 2.59984 2.71481 3.06780 3.17358 3.27637 3.43593 3.92175 4.33545 4.40189 4.51210 4.81237 5.08024 5.23461 5.34533 5.35083 5.42641 5.52492 5.63267 5.81233 5.97654 6.05108 6.07862 6.10190 6.24020 6.38237 6.59279 6.68267 6.81328 6.84808 6.88209 7.09198 7.12540 7.23088 7.26917 7.31182 7.42572 7.64886 7.71090 7.84284 7.90319 8.06614 8.30418 8.60098 8.72411 9.98917 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.004589 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.613231 B = 6099.565430 C = 6998.741373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.085 3.915 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.434 4.434 8 H 0.097 0.903 9 C 0.110 3.890 10 C -0.233 4.233 11 C -0.073 4.073 12 C -0.248 4.248 13 C -0.057 4.057 14 C -0.174 4.174 15 C 0.052 3.948 16 C -0.125 4.125 17 C -0.088 4.088 18 C -0.229 4.229 19 C 0.121 3.879 20 O -0.323 6.323 21 C 0.060 3.940 22 C 0.065 3.935 23 N -0.851 5.851 24 C -0.159 4.159 25 H 0.286 0.714 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.340 0.660 38 H 0.351 0.649 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -9.706 4.539 11.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.165 1.165 7 C -0.462 4.462 8 H 0.115 0.885 9 C 0.106 3.894 10 C -0.252 4.252 11 C -0.091 4.091 12 C -0.267 4.267 13 C -0.075 4.075 14 C -0.175 4.175 15 C 0.052 3.948 16 C -0.143 4.143 17 C -0.107 4.107 18 C -0.248 4.248 19 C 0.077 3.923 20 O -0.238 6.238 21 C -0.016 4.016 22 C -0.066 4.066 23 N -0.382 5.382 24 C -0.178 4.178 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.404 -9.523 5.179 11.700 hybrid contribution -0.128 0.534 -0.920 1.072 sum 4.276 -8.988 4.259 10.827 Atomic orbital electron populations 1.69673 1.08153 1.30376 1.34049 1.26203 0.94686 1.01683 0.90959 0.86370 0.81483 0.79819 0.78983 1.19587 1.21732 1.16518 1.19504 0.92802 0.96158 1.37753 0.88516 1.17617 0.92648 0.89760 0.89326 1.20783 0.95795 1.04657 1.03926 1.20414 0.93845 0.97028 0.97841 1.20296 0.98332 1.02054 1.06016 1.20712 0.94204 0.96824 0.95776 1.18543 0.93137 1.02701 1.03109 1.18535 0.92864 0.90891 0.92542 1.21314 0.98819 1.00282 0.93921 1.20779 0.98731 0.92310 0.98843 1.21017 1.06789 0.97041 0.99912 1.18738 0.96483 0.82070 0.95045 1.85944 1.73785 1.14867 1.49165 1.22783 0.98194 0.88646 0.91981 1.21813 0.89665 0.94671 1.00465 1.58753 1.06246 1.09941 1.63227 1.20500 1.05840 0.91286 1.00126 0.90326 0.88109 0.88908 0.88758 0.88489 0.85290 0.86621 0.86709 0.91880 0.91420 0.89418 0.94473 0.84813 0.83549 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.63 13.93 55.55 0.77 -19.86 16 2 C 0.08 2.14 5.41 -17.32 -0.09 2.05 16 3 Si 0.91 20.16 24.52 -169.99 -4.17 15.99 16 4 H -0.27 -5.85 6.72 56.52 0.38 -5.47 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.24 -5.52 6.85 56.52 0.39 -5.14 16 7 C -0.43 -11.30 7.52 -37.89 -0.29 -11.59 16 8 H 0.10 2.70 7.04 -52.49 -0.37 2.33 16 9 C 0.11 2.72 5.09 -106.56 -0.54 2.17 16 10 C -0.23 -5.51 7.10 -39.28 -0.28 -5.79 16 11 C -0.07 -1.56 9.96 -39.98 -0.40 -1.96 16 12 C -0.25 -5.10 10.03 -39.38 -0.40 -5.49 16 13 C -0.06 -1.20 9.50 -39.30 -0.37 -1.58 16 14 C -0.17 -3.99 5.52 -104.22 -0.58 -4.57 16 15 C 0.05 1.11 4.93 -104.92 -0.52 0.59 16 16 C -0.13 -2.58 8.10 -39.15 -0.32 -2.90 16 17 C -0.09 -1.58 10.03 -39.66 -0.40 -1.98 16 18 C -0.23 -3.84 9.04 -39.32 -0.36 -4.20 16 19 C 0.12 2.15 6.68 -39.27 -0.26 1.89 16 20 O -0.32 -5.05 9.65 -19.44 -0.19 -5.24 16 21 C 0.06 0.72 5.08 37.16 0.19 0.91 16 22 C 0.06 0.63 7.21 -3.83 -0.03 0.60 16 23 N -0.85 -8.31 9.62 -10.37 -0.10 -8.41 16 24 C -0.16 -3.12 9.46 -39.01 -0.37 -3.49 16 25 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 26 H 0.10 2.37 4.77 -52.48 -0.25 2.12 16 27 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.10 1.83 8.04 -52.48 -0.42 1.41 16 30 H 0.13 2.77 7.33 -52.48 -0.38 2.39 16 31 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.11 1.60 6.28 -52.48 -0.33 1.27 16 33 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 34 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.34 2.52 9.08 -39.29 -0.36 2.16 16 38 H 0.35 3.72 8.55 -39.29 -0.34 3.38 16 39 H 0.12 2.30 8.04 -52.48 -0.42 1.88 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -27.53 322.22 -8.78 -36.30 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.95 Total: 11.68 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: -5.00 Total: -35.32 kcal Atomic # 7 Polarization: -28.94 SS G_CDS: 0.67 Total: -28.27 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.19 Total: -5.24 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.17 Total: 15.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.53 -8.78 -36.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244324329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.599 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds