Wall clock time and date at job start Tue Mar 31 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35609 * 117.00012 * 2 1 4 4 C 1.39134 * 119.88878 * 0.23383 * 3 2 1 5 5 C 1.36426 * 120.43978 * 180.28493 * 4 3 2 6 6 C 1.40911 * 120.19290 * 359.73295 * 5 4 3 7 7 C 1.41243 * 120.12052 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99646 * 24.58382 * 7 6 5 9 9 C 1.39851 * 120.00141 * 204.58440 * 7 6 5 10 10 N 1.30903 * 120.00026 * 17.97353 * 9 7 6 11 11 Si 1.86796 * 119.99957 * 197.97138 * 9 7 6 12 12 H 1.48495 * 109.47402 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47258 * 120.00163 * 11 9 7 14 14 H 1.48504 * 109.47091 * 239.99877 * 11 9 7 15 15 C 1.40619 * 119.76157 * 0.02562 * 6 5 4 16 16 C 1.38592 * 119.57008 * 359.97438 * 15 6 5 17 17 C 1.48304 * 120.09777 * 179.97438 * 16 15 6 18 18 C 1.39447 * 120.04685 * 64.97975 * 17 16 15 19 19 C 1.37832 * 119.95132 * 180.02562 * 18 17 16 20 20 C 1.39034 * 120.04912 * 359.97107 * 19 18 17 21 21 N 1.39592 * 119.95169 * 180.02562 * 20 19 18 22 22 C 1.38994 * 120.09862 * 359.79733 * 20 19 18 23 23 C 1.37876 * 120.04701 * 0.46182 * 22 20 19 24 24 C 1.50706 * 120.02720 * 179.79172 * 23 22 20 25 25 H 1.08996 * 109.46891 * 59.99846 * 1 2 3 26 26 H 1.08995 * 109.47543 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47116 * 300.00296 * 1 2 3 28 28 H 1.08000 * 119.77725 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.90335 * 179.72119 * 5 4 3 30 30 H 0.97002 * 119.99869 * 180.02562 * 10 9 7 31 31 H 1.08001 * 120.20984 * 180.02562 * 15 6 5 32 32 H 1.08002 * 120.02168 * 0.04395 * 18 17 16 33 33 H 1.08000 * 119.97551 * 180.02562 * 19 18 17 34 34 H 0.97001 * 120.00108 * 0.02562 * 21 20 19 35 35 H 0.97000 * 119.99699 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.98180 * 180.25286 * 22 20 19 37 37 H 1.09001 * 109.47276 * 269.72246 * 24 23 22 38 38 H 1.09005 * 109.46865 * 29.72453 * 24 23 22 39 39 H 1.08993 * 109.47168 * 149.71936 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2847 2.3737 0.0049 5 6 1.8923 3.5951 -0.0009 6 6 3.2984 3.6872 -0.0062 7 6 3.9258 4.9526 -0.0117 8 1 3.4051 5.8151 0.3772 9 6 5.2213 5.0885 -0.5206 10 7 5.7197 4.1610 -1.2984 11 14 6.2405 6.5937 -0.0906 12 1 5.4544 7.4864 0.7982 13 1 7.4808 6.1689 0.6069 14 1 6.5970 7.3220 -1.3347 15 6 4.0746 2.5147 -0.0062 16 6 3.4471 1.2790 -0.0002 17 6 4.2543 0.0349 -0.0007 18 6 5.0675 -0.2702 1.0903 19 6 5.8173 -1.4267 1.0876 20 6 5.7629 -2.2891 -0.0015 21 7 6.5228 -3.4601 -0.0019 22 6 4.9494 -1.9895 -1.0880 23 6 4.2017 -0.8311 -1.0918 24 6 3.3235 -0.5043 -2.2721 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2065 2.3109 0.0091 29 1 1.2938 4.4942 -0.0015 30 1 6.6184 4.2551 -1.6511 31 1 5.1528 2.5768 -0.0098 32 1 5.1094 0.3992 1.9369 33 1 6.4469 -1.6635 1.9326 34 1 7.0879 -3.6718 0.7575 35 1 6.4850 -4.0625 -0.7612 36 1 4.9055 -2.6628 -1.9312 37 1 3.8906 0.0808 -2.9961 38 1 2.9832 -1.4288 -2.7387 39 1 2.4614 0.0712 -1.9352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244367278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:50 Heat of formation + Delta-G solvation = -1.158730 kcal Electronic energy + Delta-G solvation = -21890.590018 eV Core-core repulsion = 18762.462820 eV Total energy + Delta-G solvation = -3128.127198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.37255 -38.25541 -36.27292 -34.56988 -33.20184 -31.70241 -30.56177 -29.04027 -27.39826 -26.85335 -25.93513 -24.55638 -22.18754 -21.02470 -20.60134 -19.67063 -17.27885 -16.77777 -16.50650 -16.12267 -15.30108 -15.04207 -14.89725 -14.49079 -13.82611 -13.49477 -13.14710 -13.04472 -12.85774 -12.50646 -12.43363 -12.00977 -11.98802 -11.68196 -11.39694 -11.30628 -11.01917 -10.84147 -10.70494 -10.57513 -10.40105 -10.03072 -9.83248 -9.63166 -9.34171 -8.97546 -8.12688 -7.58973 -7.07309 -6.75084 -6.62822 -4.21358 2.04584 2.13261 2.80782 2.94616 3.11938 3.16687 3.22784 3.98882 4.16301 4.38348 4.46187 4.64098 5.41694 5.49013 5.63943 5.68450 5.70893 5.75937 5.88353 5.93785 6.06224 6.11987 6.18326 6.35397 6.42811 6.49486 6.59050 6.76696 6.90940 7.01054 7.06606 7.16845 7.22061 7.37919 7.42075 7.52585 7.60301 7.81065 7.91240 8.02095 8.03805 8.24564 8.50359 8.68453 8.94046 9.01060 10.26525 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.006288 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.501737 B = 4451.523177 C = 5856.381805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.008 3.992 4 C -0.170 4.170 5 C -0.193 4.193 6 C 0.087 3.913 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.796 5.796 11 Si 0.903 3.097 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.276 1.276 15 C -0.116 4.116 16 C -0.052 4.052 17 C -0.056 4.056 18 C -0.062 4.062 19 C -0.206 4.206 20 C 0.199 3.801 21 N -0.887 5.887 22 C -0.202 4.202 23 C -0.016 4.016 24 C -0.115 4.115 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.279 0.721 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.392 0.608 35 H 0.392 0.608 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -10.109 0.967 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C -0.035 4.035 4 C -0.189 4.189 5 C -0.213 4.213 6 C 0.084 3.916 7 C -0.494 4.494 8 H 0.094 0.906 9 C -0.141 4.141 10 N -0.422 5.422 11 Si 0.728 3.272 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.201 1.201 15 C -0.136 4.136 16 C -0.053 4.053 17 C -0.058 4.058 18 C -0.081 4.081 19 C -0.228 4.228 20 C 0.097 3.903 21 N -0.427 5.427 22 C -0.224 4.224 23 C -0.016 4.016 24 C -0.172 4.172 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.219 0.781 35 H 0.219 0.781 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.554 -10.282 0.819 10.329 hybrid contribution 0.495 0.555 0.099 0.750 sum -0.059 -9.727 0.918 9.770 Atomic orbital electron populations 1.22702 0.81489 1.01586 1.00181 1.85926 1.18546 1.28295 1.90804 1.18505 0.90848 0.82898 1.11248 1.20344 0.97306 0.92932 1.08330 1.20587 0.94811 0.95051 1.10851 1.17509 0.90553 0.93334 0.90156 1.19448 0.98624 0.94945 1.36389 0.90579 1.25839 0.97985 0.97573 0.92713 1.69851 1.16322 1.33460 1.22582 0.86343 0.79920 0.81732 0.79200 1.18524 1.19794 1.20138 1.21320 0.99906 0.89189 1.03140 1.17804 0.88668 0.92259 1.06561 1.18475 0.98532 0.94956 0.93826 1.20943 0.94407 0.95285 0.97444 1.20340 1.06457 0.97333 0.98695 1.17672 0.91554 0.86921 0.94144 1.42325 1.52295 1.23996 1.24070 1.20239 1.03448 0.99993 0.98743 1.19626 0.94666 0.92388 0.94962 1.20857 0.99843 1.01066 0.95412 0.94050 0.90189 0.94094 0.88637 0.88825 0.91024 0.85428 0.86410 0.87123 0.78077 0.78101 0.87142 0.91688 0.93012 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.32 -6.48 8.37 -18.52 -0.15 -6.63 16 3 C 0.01 0.19 5.31 -38.43 -0.20 -0.01 16 4 C -0.17 -3.79 8.95 -39.90 -0.36 -4.15 16 5 C -0.19 -4.68 9.72 -39.22 -0.38 -5.06 16 6 C 0.09 2.28 5.57 -106.85 -0.60 1.69 16 7 C -0.46 -12.23 9.03 -37.84 -0.34 -12.57 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 10 N -0.80 -20.66 10.96 55.54 0.61 -20.06 16 11 Si 0.90 18.79 29.60 -169.99 -5.03 13.76 16 12 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 13 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 15 C -0.12 -3.00 8.36 -38.55 -0.32 -3.32 16 16 C -0.05 -1.23 4.63 -104.81 -0.48 -1.72 16 17 C -0.06 -1.20 4.94 -104.87 -0.52 -1.72 16 18 C -0.06 -1.21 9.72 -39.28 -0.38 -1.60 16 19 C -0.21 -3.47 9.88 -39.43 -0.39 -3.86 16 20 C 0.20 3.17 6.75 -83.75 -0.57 2.60 16 21 N -0.89 -10.22 9.08 32.44 0.29 -9.92 16 22 C -0.20 -3.44 9.53 -39.43 -0.38 -3.81 16 23 C -0.02 -0.31 5.68 -104.32 -0.59 -0.90 16 24 C -0.12 -2.14 9.43 36.01 0.34 -1.80 16 25 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.61 7.64 -51.92 -0.40 0.21 16 28 H 0.10 1.85 6.26 -52.49 -0.33 1.52 16 29 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.13 3.45 6.16 -52.49 -0.32 3.13 16 32 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.39 3.71 8.84 -40.82 -0.36 3.35 16 35 H 0.39 3.73 8.84 -40.82 -0.36 3.37 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.08 1.72 4.62 -51.93 -0.24 1.48 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -28.96 324.58 -8.57 -37.53 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.91 Total: 13.29 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: -4.27 Total: -32.86 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.90 Total: -29.98 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.15 Total: -6.63 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.96 -8.57 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244367278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.374 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds