Wall clock time and date at job start Tue Mar 31 2020 05:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37895 * 120.02417 * 2 1 4 4 C 1.38979 * 120.04531 * 180.31435 * 3 2 1 5 5 N 1.39611 * 119.95099 * 179.69614 * 4 3 2 6 6 C 1.39032 * 120.09908 * 359.67931 * 4 3 2 7 7 C 1.37850 * 120.04334 * 0.04160 * 6 4 3 8 8 C 1.39379 * 120.02497 * 179.73774 * 2 1 3 9 9 C 1.48340 * 120.04892 * 359.97438 * 8 2 1 10 10 C 1.39386 * 120.06732 * 129.72006 * 9 8 2 11 11 C 1.37915 * 119.93474 * 179.97438 * 10 9 8 12 12 C 1.38825 * 120.06371 * 0.02562 * 11 10 9 13 13 O 1.35898 * 119.93005 * 179.72371 * 12 11 10 14 14 C 1.42893 * 117.00035 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47391 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99420 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00219 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99938 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46966 * 120.00429 * 19 17 15 22 22 H 1.48502 * 109.46945 * 240.00042 * 19 17 15 23 23 C 1.38815 * 120.13736 * 0.02562 * 12 11 10 24 24 C 1.37916 * 120.07050 * 359.97438 * 23 12 11 25 25 H 1.08995 * 109.47517 * 270.25790 * 1 2 3 26 26 H 1.09004 * 109.46835 * 30.25894 * 1 2 3 27 27 H 1.08999 * 109.46900 * 150.25815 * 1 2 3 28 28 H 1.08000 * 119.97660 * 0.02562 * 3 2 1 29 29 H 0.97002 * 120.00130 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99875 * 359.97438 * 5 4 3 31 31 H 1.07996 * 119.97641 * 180.02562 * 6 4 3 32 32 H 1.08002 * 120.01808 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.03499 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.97056 * 179.97438 * 11 10 9 35 35 H 1.09003 * 109.47407 * 300.00476 * 14 13 12 36 36 H 1.09005 * 109.46997 * 59.99631 * 14 13 12 37 37 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 38 38 H 1.08006 * 119.96899 * 179.97438 * 23 12 11 39 39 H 1.07997 * 120.03737 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1939 0.0000 4 6 3.5868 1.1944 -0.0066 5 7 4.2833 2.4044 -0.0130 6 6 4.2845 -0.0081 -0.0065 7 6 3.5987 -1.2039 -0.0007 8 6 2.2045 -1.2067 0.0055 9 6 1.4644 -2.4923 0.0120 10 6 1.7837 -3.4866 -0.9112 11 6 1.0943 -4.6810 -0.9024 12 6 0.0828 -4.8933 0.0244 13 8 -0.5986 -6.0691 0.0270 14 6 -1.6272 -6.2207 1.0072 15 6 -2.2677 -7.5766 0.8579 16 1 -1.9238 -8.2546 0.0908 17 6 -3.2925 -7.9516 1.7006 18 7 -3.7114 -7.1257 2.6345 19 14 -4.0859 -9.6326 1.5159 20 1 -3.4373 -10.3661 0.3994 21 1 -3.9176 -10.4004 2.7758 22 1 -5.5330 -9.4678 1.2261 23 6 -0.2383 -3.9047 0.9444 24 6 0.4475 -2.7081 0.9406 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6570 2.1292 0.0004 29 1 5.2533 2.4056 -0.0172 30 1 3.7972 3.2438 -0.0132 31 1 5.3644 -0.0054 -0.0112 32 1 4.1411 -2.1379 -0.0010 33 1 2.5709 -3.3221 -1.6322 34 1 1.3410 -5.4516 -1.6178 35 1 -1.1954 -6.1302 2.0040 36 1 -2.3807 -5.4458 0.8661 37 1 -4.4327 -7.3893 3.2270 38 1 -1.0260 -4.0726 1.6640 39 1 0.1976 -1.9395 1.6569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244369916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:55 Heat of formation + Delta-G solvation = -5.399709 kcal Electronic energy + Delta-G solvation = -20582.498751 eV Core-core repulsion = 17454.187650 eV Total energy + Delta-G solvation = -3128.311101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95089 -38.92208 -36.77827 -34.76287 -32.90539 -32.42413 -30.63865 -30.37282 -28.05606 -27.26995 -26.34303 -23.55794 -22.44131 -22.04287 -21.14707 -20.27125 -17.45297 -17.04370 -16.72127 -16.44636 -16.07916 -15.15695 -14.63207 -14.50050 -14.31776 -14.13924 -13.91274 -13.73052 -13.09530 -13.01827 -12.83838 -12.58832 -12.45353 -12.17996 -11.82226 -11.70469 -11.09308 -11.03289 -10.95207 -10.83147 -10.62808 -10.36546 -10.11388 -9.97846 -9.24787 -8.73972 -8.61222 -8.52353 -7.83507 -7.05094 -6.24519 -4.27983 1.33203 1.43397 1.83559 2.14666 3.23308 3.29939 3.36040 3.69529 3.83127 4.17754 4.29417 4.56396 4.84053 4.92357 4.99327 5.12771 5.26666 5.33060 5.39640 5.47453 5.57330 5.69850 5.82994 5.88453 5.91122 5.96208 6.13721 6.17392 6.28810 6.38791 6.51964 6.70172 6.74374 6.79787 6.92951 7.03467 7.06061 7.16008 7.32280 7.37872 7.55998 7.69314 7.96604 8.49567 8.85663 9.37325 10.86800 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.043513 B = 0.002877 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.335252 B = 9729.495969 C =10122.355067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 C -0.198 4.198 4 C 0.210 3.790 5 N -0.882 5.882 6 C -0.203 4.203 7 C -0.060 4.060 8 C -0.084 4.084 9 C -0.103 4.103 10 C -0.072 4.072 11 C -0.170 4.170 12 C 0.155 3.845 13 O -0.317 6.317 14 C 0.192 3.808 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.913 3.087 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.212 4.212 24 C -0.065 4.065 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.396 0.604 30 H 0.395 0.605 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.266 0.734 38 H 0.133 0.867 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.680 17.820 -4.732 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.028 4.028 3 C -0.220 4.220 4 C 0.106 3.894 5 N -0.422 5.422 6 C -0.225 4.225 7 C -0.079 4.079 8 C -0.086 4.086 9 C -0.103 4.103 10 C -0.090 4.090 11 C -0.189 4.189 12 C 0.107 3.893 13 O -0.230 6.230 14 C 0.120 3.880 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.740 3.260 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.231 4.231 24 C -0.083 4.083 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.223 0.777 30 H 0.223 0.777 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.151 0.849 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.520 17.602 -4.701 22.687 hybrid contribution -0.361 -0.291 0.300 0.553 sum 13.158 17.311 -4.401 22.185 Atomic orbital electron populations 1.20942 0.91198 1.03023 1.02458 1.19697 0.95729 0.91637 0.95778 1.20318 0.91810 0.97816 1.12102 1.17771 0.91303 0.86329 0.93995 1.42429 1.08740 1.05129 1.85853 1.20446 0.99101 0.91146 1.11827 1.20962 0.93146 0.97293 0.96462 1.18433 0.92455 0.91657 1.06043 1.18385 0.99173 0.93665 0.99061 1.20846 0.98519 0.92071 0.97535 1.20339 0.98445 0.98699 1.01375 1.19355 0.90964 0.86178 0.92836 1.86116 1.48598 1.31336 1.56938 1.20650 0.83371 0.98280 0.85742 1.21023 1.17709 0.99690 1.17681 0.91098 1.24942 0.96296 0.98370 0.94660 1.69962 1.28246 1.36035 1.19037 0.86198 0.78932 0.82657 0.78261 1.19352 1.20670 1.20662 1.21398 1.04373 0.94774 1.02579 1.20963 0.94178 0.96168 0.97033 0.90986 0.92016 0.90495 0.86501 0.77677 0.77690 0.86542 0.85981 0.86200 0.85689 0.96056 0.96052 0.92396 0.84879 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.45 36.01 0.30 -1.07 16 2 C -0.03 -0.35 5.87 -104.32 -0.61 -0.96 16 3 C -0.20 -2.17 9.53 -39.43 -0.38 -2.54 16 4 C 0.21 2.14 6.75 -83.75 -0.57 1.58 16 5 N -0.88 -6.04 9.08 32.44 0.29 -5.75 16 6 C -0.20 -2.16 9.88 -39.43 -0.39 -2.55 16 7 C -0.06 -0.73 9.49 -39.28 -0.37 -1.10 16 8 C -0.08 -1.14 5.47 -104.87 -0.57 -1.71 16 9 C -0.10 -1.56 4.71 -104.88 -0.49 -2.06 16 10 C -0.07 -1.09 9.50 -39.27 -0.37 -1.46 16 11 C -0.17 -2.98 9.97 -39.48 -0.39 -3.38 16 12 C 0.15 3.21 6.69 -39.15 -0.26 2.95 16 13 O -0.32 -7.79 10.12 -19.42 -0.20 -7.98 16 14 C 0.19 5.15 4.49 36.01 0.16 5.31 16 15 C -0.52 -15.03 9.43 -34.44 -0.32 -15.35 16 16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 19 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.21 -4.09 9.02 -39.49 -0.36 -4.44 16 24 C -0.07 -1.06 7.90 -39.27 -0.31 -1.37 16 25 H 0.07 0.78 7.50 -51.93 -0.39 0.39 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.08 0.99 6.46 -51.93 -0.34 0.66 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.40 2.01 8.84 -40.82 -0.36 1.65 16 30 H 0.40 2.05 8.84 -40.82 -0.36 1.69 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.35 8.04 -52.49 -0.42 0.92 16 33 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 34 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 35 H 0.02 0.59 7.66 -51.93 -0.40 0.20 16 36 H 0.02 0.59 7.65 -51.93 -0.40 0.20 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.13 2.69 6.28 -52.48 -0.33 2.36 16 39 H 0.12 1.70 6.86 -52.49 -0.36 1.34 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -30.88 330.50 -9.25 -40.13 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.01 Total: 4.11 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -5.04 Total: -26.58 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 1.03 Total: -30.99 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.20 Total: -7.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.88 -9.25 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244369916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.734 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds