Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35681 * 117.00288 * 2 1 4 4 C 1.37903 * 120.18896 * 359.97438 * 3 2 1 5 5 C 1.39724 * 119.93042 * 180.02562 * 4 3 2 6 6 C 1.47838 * 119.84833 * 180.02562 * 5 4 3 7 7 C 1.39584 * 120.19059 * 309.72686 * 6 5 4 8 8 C 1.37875 * 119.92916 * 179.71916 * 7 6 5 9 9 C 1.38543 * 120.31465 * 0.55971 * 8 7 6 10 10 C 1.50701 * 119.80221 * 179.74108 * 9 8 7 11 11 C 1.38108 * 120.39267 * 359.72118 * 9 8 7 12 12 C 1.38796 * 120.06156 * 359.97438 * 11 9 8 13 13 N 1.39256 * 120.16120 * 179.97438 * 12 11 9 14 14 C 1.40169 * 120.30426 * 359.73706 * 5 4 3 15 15 C 1.36081 * 120.38098 * 0.54769 * 14 5 4 16 16 C 1.40937 * 120.06206 * 359.44908 * 15 14 5 17 17 C 1.40808 * 120.14822 * 180.29950 * 16 15 14 18 18 H 1.07998 * 119.99916 * 204.95083 * 17 16 15 19 19 C 1.39964 * 119.99828 * 24.95477 * 17 16 15 20 20 N 1.30856 * 120.00107 * 17.83045 * 19 17 16 21 21 Si 1.86794 * 119.99668 * 197.82715 * 19 17 16 22 22 H 1.48502 * 109.47284 * 90.00029 * 21 19 17 23 23 H 1.48497 * 109.47316 * 210.00052 * 21 19 17 24 24 H 1.48500 * 109.47602 * 330.00227 * 21 19 17 25 25 H 1.08993 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46379 * 300.00108 * 1 2 3 27 27 H 1.08998 * 109.46633 * 59.99617 * 1 2 3 28 28 H 1.07998 * 120.03919 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.03608 * 359.97438 * 7 6 5 30 30 H 1.07989 * 119.84062 * 180.25812 * 8 7 6 31 31 H 1.09002 * 109.47229 * 269.97666 * 10 9 8 32 32 H 1.09004 * 109.47428 * 29.97775 * 10 9 8 33 33 H 1.08999 * 109.47421 * 149.97770 * 10 9 8 34 34 H 1.07999 * 119.97136 * 180.02562 * 11 9 8 35 35 H 0.97002 * 120.00259 * 180.02562 * 13 12 11 36 36 H 0.97000 * 119.99977 * 0.02562 * 13 12 11 37 37 H 1.07996 * 119.80837 * 180.29492 * 14 5 4 38 38 H 1.07997 * 119.96484 * 179.73386 * 15 14 5 39 39 H 0.97004 * 119.99990 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2979 2.3680 -0.0005 5 6 1.9379 3.6100 -0.0011 6 6 1.1351 4.8514 -0.0011 7 6 0.1061 5.0219 -0.9286 8 6 -0.6430 6.1793 -0.9201 9 6 -0.3722 7.1808 -0.0019 10 6 -1.1945 8.4437 -0.0066 11 6 0.6466 7.0285 0.9180 12 6 1.4067 5.8671 0.9277 13 7 2.4348 5.7116 1.8540 14 6 3.3376 3.6844 0.0045 15 6 4.0872 2.5487 -0.0008 16 6 3.4581 1.2875 -0.0001 17 6 4.2320 0.1112 0.0008 18 1 3.8204 -0.8063 -0.3933 19 6 5.5346 0.1309 0.5125 20 7 5.9161 1.1093 1.2932 21 14 6.7283 -1.2395 0.0810 22 1 7.4730 -0.8775 -1.1517 23 1 7.6861 -1.4321 1.1993 24 1 5.9749 -2.4986 -0.1478 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 0.2192 2.3158 -0.0014 29 1 -0.1058 4.2462 -1.6496 30 1 -1.4415 6.3079 -1.6356 31 1 -0.7321 9.1759 -0.6685 32 1 -2.2015 8.2203 -0.3589 33 1 -1.2447 8.8484 1.0042 34 1 0.8516 7.8133 1.6310 35 1 2.9648 4.8991 1.8585 36 1 2.6210 6.4156 2.4947 37 1 3.8239 4.6487 0.0088 38 1 5.1652 2.6139 -0.0008 39 1 6.8188 1.1227 1.6482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244390526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = -5.963482 kcal Electronic energy + Delta-G solvation = -21443.014793 eV Core-core repulsion = 18314.679245 eV Total energy + Delta-G solvation = -3128.335548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.32602 -38.36988 -36.13679 -34.52706 -33.69696 -32.00388 -29.77818 -28.82549 -28.31842 -26.83116 -26.52645 -24.24635 -22.03441 -21.26626 -20.47502 -19.90691 -17.49742 -16.77331 -16.44366 -15.75004 -15.28077 -14.97165 -14.63578 -14.46685 -14.09618 -13.75682 -13.56351 -13.32168 -12.94133 -12.66962 -12.56362 -12.12595 -11.92359 -11.80319 -11.57396 -11.26159 -11.16299 -11.03161 -10.78930 -10.60133 -10.40031 -10.07239 -9.87867 -9.78476 -9.50293 -9.25596 -8.21900 -7.50511 -7.14011 -6.85626 -6.70178 -4.26516 1.76346 2.13084 2.71851 2.97859 3.05614 3.10236 3.15813 3.90501 4.31706 4.43860 4.49386 4.62002 5.21683 5.28652 5.50633 5.55353 5.69662 5.73675 5.77673 5.83785 5.86778 5.95360 5.98625 6.07055 6.17883 6.33116 6.42539 6.52388 6.68497 6.92368 7.00776 7.03668 7.13273 7.24377 7.32755 7.40078 7.69508 7.73064 7.99057 8.08222 8.14418 8.32938 8.36905 8.63537 8.76749 9.02882 10.10620 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.004493 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.302888 B = 6230.520397 C = 7094.575925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.009 3.991 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.075 4.075 7 C -0.077 4.077 8 C -0.181 4.181 9 C -0.065 4.065 10 C -0.108 4.108 11 C -0.205 4.205 12 C 0.220 3.780 13 N -0.874 5.874 14 C -0.113 4.113 15 C -0.150 4.150 16 C 0.103 3.897 17 C -0.437 4.437 18 H 0.084 0.916 19 C 0.073 3.927 20 N -0.790 5.790 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.261 1.261 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.408 0.592 36 H 0.388 0.612 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 7.343 -0.478 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.228 6.228 3 C -0.035 4.035 4 C -0.173 4.173 5 C -0.155 4.155 6 C -0.079 4.079 7 C -0.096 4.096 8 C -0.201 4.201 9 C -0.066 4.066 10 C -0.164 4.164 11 C -0.228 4.228 12 C 0.114 3.886 13 N -0.415 5.415 14 C -0.132 4.132 15 C -0.169 4.169 16 C 0.100 3.900 17 C -0.466 4.466 18 H 0.102 0.898 19 C -0.145 4.145 20 N -0.415 5.415 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.185 1.185 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.241 0.759 36 H 0.215 0.785 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.791 7.204 -0.339 9.906 hybrid contribution 0.570 -0.409 0.200 0.729 sum -6.221 6.795 -0.139 9.214 Atomic orbital electron populations 1.22728 0.81719 1.01702 0.99975 1.85967 1.18217 1.28182 1.90392 1.19074 0.92299 0.82631 1.09502 1.20630 0.97231 0.91870 1.07575 1.17690 0.92057 0.89983 1.15816 1.18473 0.98471 0.94220 0.96731 1.21003 0.94697 0.96755 0.97173 1.20570 1.02775 0.95115 1.01643 1.19471 0.95905 0.95630 0.95582 1.20715 0.98821 0.95154 1.01757 1.20230 1.00719 0.97788 1.04087 1.17837 0.88578 0.93053 0.89137 1.42712 1.37550 1.23734 1.37457 1.20424 0.92408 0.97189 1.03134 1.20758 0.99612 0.90508 1.06069 1.17104 0.87349 0.94052 0.91499 1.19484 0.96598 0.96875 1.33670 0.89765 1.25947 0.98898 0.96991 0.92683 1.69826 1.19245 1.30670 1.21732 0.86258 0.79696 0.81529 0.79001 1.19221 1.20313 1.18473 0.90047 0.94170 0.94209 0.88439 0.86714 0.87332 0.91812 0.92065 0.92236 0.87167 0.75909 0.78526 0.89042 0.85800 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.60 16 2 O -0.31 -7.24 9.77 -18.74 -0.18 -7.42 16 3 C 0.01 0.22 6.71 -38.46 -0.26 -0.03 16 4 C -0.15 -3.46 8.48 -39.15 -0.33 -3.79 16 5 C -0.15 -3.37 5.11 -104.69 -0.53 -3.90 16 6 C -0.07 -1.45 5.48 -104.70 -0.57 -2.03 16 7 C -0.08 -1.37 9.50 -39.21 -0.37 -1.74 16 8 C -0.18 -2.80 9.67 -39.60 -0.38 -3.19 16 9 C -0.07 -0.96 5.88 -104.56 -0.62 -1.58 16 10 C -0.11 -1.19 10.00 36.01 0.36 -0.83 16 11 C -0.21 -3.19 9.52 -39.42 -0.38 -3.57 16 12 C 0.22 3.89 6.67 -83.51 -0.56 3.33 16 13 N -0.87 -14.13 8.59 32.58 0.28 -13.85 16 14 C -0.11 -2.55 7.62 -39.63 -0.30 -2.85 16 15 C -0.15 -3.75 8.61 -39.34 -0.34 -4.08 16 16 C 0.10 2.71 5.58 -106.65 -0.60 2.11 16 17 C -0.44 -11.56 8.69 -37.96 -0.33 -11.89 16 18 H 0.08 2.23 7.64 -52.49 -0.40 1.82 16 19 C 0.07 1.79 5.13 -17.32 -0.09 1.70 16 20 N -0.79 -19.68 10.97 55.55 0.61 -19.07 16 21 Si 0.91 18.48 29.60 -169.99 -5.03 13.44 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.66 7.66 -51.93 -0.40 0.27 16 27 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 28 H 0.10 1.99 6.27 -52.49 -0.33 1.67 16 29 H 0.11 1.95 8.04 -52.49 -0.42 1.52 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.41 7.33 5.95 -40.82 -0.24 7.09 16 36 H 0.39 5.03 8.84 -40.82 -0.36 4.67 16 37 H 0.09 1.93 7.44 -52.49 -0.39 1.54 16 38 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 39 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -27.96 325.26 -8.66 -36.62 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -4.93 Total: 16.12 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -4.31 Total: -30.74 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.89 Total: -32.92 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.18 Total: -7.42 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.96 -8.66 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244390526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.656 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds