Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35681 * 117.00288 * 2 1 4 4 C 1.37903 * 120.18896 * 359.97438 * 3 2 1 5 5 C 1.39724 * 119.93042 * 180.02562 * 4 3 2 6 6 C 1.47838 * 119.84833 * 180.02562 * 5 4 3 7 7 C 1.39584 * 120.19059 * 309.72686 * 6 5 4 8 8 C 1.37875 * 119.92916 * 179.71916 * 7 6 5 9 9 C 1.38543 * 120.31465 * 0.55971 * 8 7 6 10 10 C 1.50701 * 119.80221 * 179.74108 * 9 8 7 11 11 C 1.38108 * 120.39267 * 359.72118 * 9 8 7 12 12 C 1.38796 * 120.06156 * 359.97438 * 11 9 8 13 13 N 1.39256 * 120.16120 * 179.97438 * 12 11 9 14 14 C 1.40169 * 120.30426 * 359.73706 * 5 4 3 15 15 C 1.36081 * 120.38098 * 0.54769 * 14 5 4 16 16 C 1.40937 * 120.06206 * 359.44908 * 15 14 5 17 17 C 1.40808 * 120.14822 * 180.29950 * 16 15 14 18 18 H 1.07998 * 119.99916 * 204.95083 * 17 16 15 19 19 C 1.39964 * 119.99828 * 24.95477 * 17 16 15 20 20 N 1.30856 * 120.00107 * 17.83045 * 19 17 16 21 21 Si 1.86794 * 119.99668 * 197.82715 * 19 17 16 22 22 H 1.48502 * 109.47284 * 90.00029 * 21 19 17 23 23 H 1.48497 * 109.47316 * 210.00052 * 21 19 17 24 24 H 1.48500 * 109.47602 * 330.00227 * 21 19 17 25 25 H 1.08993 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46379 * 300.00108 * 1 2 3 27 27 H 1.08998 * 109.46633 * 59.99617 * 1 2 3 28 28 H 1.07998 * 120.03919 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.03608 * 359.97438 * 7 6 5 30 30 H 1.07989 * 119.84062 * 180.25812 * 8 7 6 31 31 H 1.09002 * 109.47229 * 269.97666 * 10 9 8 32 32 H 1.09004 * 109.47428 * 29.97775 * 10 9 8 33 33 H 1.08999 * 109.47421 * 149.97770 * 10 9 8 34 34 H 1.07999 * 119.97136 * 180.02562 * 11 9 8 35 35 H 0.97002 * 120.00259 * 180.02562 * 13 12 11 36 36 H 0.97000 * 119.99977 * 0.02562 * 13 12 11 37 37 H 1.07996 * 119.80837 * 180.29492 * 14 5 4 38 38 H 1.07997 * 119.96484 * 179.73386 * 15 14 5 39 39 H 0.97004 * 119.99990 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2979 2.3680 -0.0005 5 6 1.9379 3.6100 -0.0011 6 6 1.1351 4.8514 -0.0011 7 6 0.1061 5.0219 -0.9286 8 6 -0.6430 6.1793 -0.9201 9 6 -0.3722 7.1808 -0.0019 10 6 -1.1945 8.4437 -0.0066 11 6 0.6466 7.0285 0.9180 12 6 1.4067 5.8671 0.9277 13 7 2.4348 5.7116 1.8540 14 6 3.3376 3.6844 0.0045 15 6 4.0872 2.5487 -0.0008 16 6 3.4581 1.2875 -0.0001 17 6 4.2320 0.1112 0.0008 18 1 3.8204 -0.8063 -0.3933 19 6 5.5346 0.1309 0.5125 20 7 5.9161 1.1093 1.2932 21 14 6.7283 -1.2395 0.0810 22 1 7.4730 -0.8775 -1.1517 23 1 7.6861 -1.4321 1.1993 24 1 5.9749 -2.4986 -0.1478 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 0.2192 2.3158 -0.0014 29 1 -0.1058 4.2462 -1.6496 30 1 -1.4415 6.3079 -1.6356 31 1 -0.7321 9.1759 -0.6685 32 1 -2.2015 8.2203 -0.3589 33 1 -1.2447 8.8484 1.0042 34 1 0.8516 7.8133 1.6310 35 1 2.9648 4.8991 1.8585 36 1 2.6210 6.4156 2.4947 37 1 3.8239 4.6487 0.0088 38 1 5.1652 2.6139 -0.0008 39 1 6.8188 1.1227 1.6482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244390526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = -20.731737 kcal Electronic energy + Delta-G solvation = -21443.655193 eV Core-core repulsion = 18314.679245 eV Total energy + Delta-G solvation = -3128.975948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83905 -39.92686 -37.83634 -35.98734 -35.28635 -33.42108 -31.38629 -30.60437 -29.56466 -28.27267 -28.04366 -25.81073 -23.43626 -22.81105 -22.19079 -21.35406 -19.33925 -18.38900 -17.79173 -17.21163 -16.83509 -16.51951 -16.23564 -16.09761 -15.71845 -15.01510 -14.73470 -14.61055 -14.48860 -14.20208 -14.12367 -13.53977 -13.35712 -13.09339 -12.98099 -12.82716 -12.72995 -12.54874 -12.28069 -12.07438 -11.83063 -11.69703 -11.54901 -11.26539 -11.18781 -11.03641 -9.67753 -9.15427 -8.91226 -8.60079 -8.17006 -6.17593 0.36958 0.83910 1.06403 1.11175 1.38564 1.51288 1.52593 2.22305 2.67898 2.89742 3.09942 3.17727 3.67175 4.07537 4.13472 4.25165 4.35218 4.45455 4.46372 4.55408 4.63329 4.66737 4.72288 4.77744 4.93942 4.97549 5.07695 5.15690 5.19487 5.35133 5.38532 5.42588 5.56309 5.67958 5.84530 5.87171 5.98050 6.17078 6.20527 6.28921 6.51163 6.71848 6.78080 6.89117 7.08198 7.22504 8.32731 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.004493 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.302888 B = 6230.520397 C = 7094.575925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C -0.001 4.001 4 C -0.162 4.162 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.081 4.081 8 C -0.185 4.185 9 C -0.056 4.056 10 C -0.107 4.107 11 C -0.209 4.209 12 C 0.211 3.789 13 N -0.873 5.873 14 C -0.117 4.117 15 C -0.162 4.162 16 C 0.064 3.936 17 C -0.479 4.479 18 H 0.069 0.931 19 C 0.036 3.964 20 N -0.820 5.820 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.263 1.263 25 H 0.113 0.887 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.398 0.602 36 H 0.403 0.597 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 9.347 -0.552 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.046 4.046 4 C -0.181 4.181 5 C -0.134 4.134 6 C -0.123 4.123 7 C -0.100 4.100 8 C -0.205 4.205 9 C -0.056 4.056 10 C -0.163 4.163 11 C -0.231 4.231 12 C 0.105 3.895 13 N -0.413 5.413 14 C -0.135 4.135 15 C -0.181 4.181 16 C 0.062 3.938 17 C -0.508 4.508 18 H 0.087 0.913 19 C -0.179 4.179 20 N -0.446 5.446 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.187 1.187 25 H 0.131 0.869 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.153 0.847 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.229 0.771 36 H 0.232 0.768 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.586 9.243 -0.402 12.622 hybrid contribution 0.848 -0.795 0.220 1.182 sum -7.738 8.448 -0.181 11.458 Atomic orbital electron populations 1.23058 0.78782 1.04148 1.00761 1.85914 1.21329 1.27874 1.90347 1.19265 0.92253 0.83812 1.09222 1.20876 0.98193 0.91493 1.07518 1.18028 0.91990 0.91200 1.12132 1.18462 1.00252 0.94134 0.99502 1.21116 0.94328 0.97807 0.96757 1.20887 1.02961 0.94337 1.02322 1.20001 0.95112 0.96630 0.93890 1.20800 0.98969 0.93380 1.03200 1.20574 1.00356 0.97476 1.04744 1.18036 0.89036 0.93375 0.89042 1.42692 1.37104 1.23780 1.37695 1.20521 0.92983 0.96886 1.03153 1.20704 0.99164 0.91152 1.07126 1.17446 0.88675 0.94588 0.93109 1.19537 0.98384 0.96597 1.36316 0.91270 1.26683 0.99787 0.99452 0.91971 1.69858 1.19981 1.32327 1.22438 0.85229 0.77362 0.78202 0.79086 1.18566 1.18979 1.18739 0.86914 0.93572 0.93004 0.86465 0.86778 0.84678 0.90343 0.90532 0.90819 0.84656 0.77115 0.76783 0.87823 0.87256 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.81 113.37 1.11 2.05 16 2 O -0.34 -16.15 9.77 -89.98 -0.88 -17.02 16 3 C 0.00 -0.06 6.71 23.00 0.15 0.10 16 4 C -0.16 -7.37 8.48 22.55 0.19 -7.18 16 5 C -0.13 -5.84 5.11 -19.91 -0.10 -5.94 16 6 C -0.12 -4.53 5.48 -19.91 -0.11 -4.64 16 7 C -0.08 -2.74 9.50 22.51 0.21 -2.52 16 8 C -0.19 -5.12 9.67 22.26 0.22 -4.91 16 9 C -0.06 -1.42 5.88 -19.82 -0.12 -1.54 16 10 C -0.11 -1.82 10.00 71.24 0.71 -1.11 16 11 C -0.21 -5.82 9.52 22.37 0.21 -5.61 16 12 C 0.21 7.13 6.67 38.60 0.26 7.39 16 13 N -0.87 -27.39 8.59 -50.84 -0.44 -27.82 16 14 C -0.12 -5.44 7.62 22.24 0.17 -5.28 16 15 C -0.16 -8.51 8.61 22.43 0.19 -8.32 16 16 C 0.06 3.58 5.58 -21.18 -0.12 3.46 16 17 C -0.48 -26.83 8.69 23.32 0.20 -26.63 16 18 H 0.07 3.91 7.64 -2.91 -0.02 3.89 16 19 C 0.04 1.84 5.13 85.26 0.44 2.28 16 20 N -0.82 -42.64 10.97 21.83 0.24 -42.40 16 21 Si 0.98 39.12 29.60 68.60 2.03 41.15 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 25 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 26 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 27 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 28 H 0.12 4.75 6.27 -2.91 -0.02 4.73 16 29 H 0.11 3.74 8.04 -2.91 -0.02 3.72 16 30 H 0.14 2.99 8.06 -2.92 -0.02 2.96 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 33 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.40 14.37 5.95 -92.71 -0.55 13.82 16 36 H 0.40 9.83 8.84 -92.71 -0.82 9.01 16 37 H 0.10 4.46 7.44 -2.91 -0.02 4.44 16 38 H 0.11 5.96 6.17 -2.91 -0.02 5.94 16 39 H 0.29 13.52 8.30 -92.70 -0.77 12.75 16 Total: -1.00 -63.43 325.26 4.30 -59.13 By element: Atomic # 1 Polarization: 45.64 SS G_CDS: -0.28 Total: 45.36 kcal Atomic # 6 Polarization: -62.02 SS G_CDS: 3.63 Total: -58.40 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.20 Total: -70.23 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.88 Total: -17.02 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -63.43 4.30 -59.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244390526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.400 kcal (2) G-P(sol) polarization free energy of solvation -63.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds