Wall clock time and date at job start Tue Mar 31 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35617 * 117.00462 * 2 1 4 4 C 1.39126 * 119.88264 * 0.26126 * 3 2 1 5 5 C 1.36432 * 120.44201 * 180.30327 * 4 3 2 6 6 C 1.40917 * 120.19182 * 359.71329 * 5 4 3 7 7 C 1.41233 * 120.11542 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00488 * 24.57711 * 7 6 5 9 9 C 1.39856 * 119.99937 * 204.58221 * 7 6 5 10 10 N 1.30893 * 120.00179 * 17.96283 * 9 7 6 11 11 Si 1.86802 * 120.00069 * 197.96994 * 9 7 6 12 12 H 1.48497 * 109.47292 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47065 * 119.99721 * 11 9 7 14 14 H 1.48499 * 109.47190 * 239.99785 * 11 9 7 15 15 C 1.40608 * 119.76654 * 0.02562 * 6 5 4 16 16 C 1.38616 * 119.56627 * 0.02562 * 15 6 5 17 17 C 1.48260 * 120.09951 * 180.02562 * 16 15 6 18 18 C 1.39300 * 120.16403 * 65.28518 * 17 16 15 19 19 C 1.38015 * 119.94619 * 180.25429 * 18 17 16 20 20 C 1.38413 * 120.28186 * 359.45560 * 19 18 17 21 21 C 1.50698 * 119.83300 * 180.24938 * 20 19 18 22 22 C 1.38142 * 120.32711 * 0.27806 * 20 19 18 23 23 C 1.38762 * 120.04446 * 359.97438 * 22 20 19 24 24 N 1.39502 * 120.13475 * 180.02562 * 23 22 20 25 25 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47155 * 299.99949 * 1 2 3 27 27 H 1.08998 * 109.46872 * 60.00073 * 1 2 3 28 28 H 1.08003 * 119.78112 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.90368 * 179.69537 * 5 4 3 30 30 H 0.96996 * 120.00577 * 179.97438 * 10 9 7 31 31 H 1.07999 * 120.21466 * 180.02562 * 15 6 5 32 32 H 1.07998 * 120.02544 * 359.97438 * 18 17 16 33 33 H 1.08004 * 119.85343 * 179.73537 * 19 18 17 34 34 H 1.08999 * 109.46709 * 90.00513 * 21 20 19 35 35 H 1.09002 * 109.46806 * 210.00197 * 21 20 19 36 36 H 1.08996 * 109.47675 * 330.00416 * 21 20 19 37 37 H 1.07998 * 119.97457 * 179.97438 * 22 20 19 38 38 H 0.96993 * 120.00042 * 0.02562 * 24 23 22 39 39 H 0.97000 * 119.99516 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2847 2.3736 0.0055 5 6 1.8922 3.5952 -0.0007 6 6 3.2984 3.6873 -0.0066 7 6 3.9256 4.9527 -0.0124 8 1 3.4050 5.8153 0.3764 9 6 5.2210 5.0887 -0.5219 10 7 5.7192 4.1611 -1.2995 11 14 6.2402 6.5941 -0.0925 12 1 5.4538 7.4875 0.7955 13 1 7.4808 6.1695 0.6048 14 1 6.5962 7.3223 -1.3368 15 6 4.0747 2.5150 -0.0067 16 6 3.4472 1.2790 -0.0015 17 6 4.2542 0.0353 -0.0009 18 6 5.0613 -0.2749 1.0913 19 6 5.8147 -1.4312 1.0848 20 6 5.7639 -2.2913 0.0015 21 6 6.5866 -3.5539 0.0075 22 6 4.9634 -1.9977 -1.0853 23 6 4.2042 -0.8362 -1.0954 24 7 3.3946 -0.5381 -2.1917 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2065 2.3108 0.0093 29 1 1.2938 4.4942 -0.0013 30 1 6.6174 4.2556 -1.6531 31 1 5.1529 2.5771 -0.0108 32 1 5.1007 0.3911 1.9405 33 1 6.4432 -1.6681 1.9306 34 1 6.0051 -4.3642 0.4472 35 1 6.8586 -3.8152 -1.0152 36 1 7.4910 -3.3956 0.5949 37 1 4.9284 -2.6726 -1.9277 38 1 3.3614 -1.1435 -2.9488 39 1 2.8645 0.2742 -2.1964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244390984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:26 Heat of formation + Delta-G solvation = -5.379622 kcal Electronic energy + Delta-G solvation = -21880.843026 eV Core-core repulsion = 18752.532796 eV Total energy + Delta-G solvation = -3128.310230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.36694 -38.20153 -36.29712 -34.30433 -33.35081 -32.23603 -29.65511 -29.08484 -28.19551 -26.89676 -25.75668 -24.57284 -21.94356 -21.27001 -20.62760 -19.67225 -17.36272 -16.82952 -16.32775 -15.78281 -15.33895 -15.07717 -14.72230 -14.53757 -13.78065 -13.54893 -13.40197 -13.16573 -13.04582 -12.67784 -12.27747 -12.13292 -11.92420 -11.80292 -11.52625 -11.29760 -11.05512 -10.92871 -10.77367 -10.64686 -10.51082 -9.97520 -9.85236 -9.82848 -9.38898 -9.02908 -8.10650 -7.52062 -7.07931 -6.74693 -6.63761 -4.26645 1.97083 2.30360 2.74684 2.87133 3.09529 3.14117 3.18298 3.95431 4.32914 4.47754 4.57030 4.59850 5.32752 5.41006 5.56674 5.62138 5.64024 5.69329 5.79920 5.83823 5.87504 5.95919 6.06400 6.09634 6.19862 6.41223 6.56820 6.66450 6.91971 6.96083 7.06115 7.14852 7.18746 7.30817 7.40458 7.48405 7.56446 7.75044 7.97451 8.18150 8.19018 8.43794 8.45176 8.63121 8.88740 8.95199 10.21518 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.006294 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.367413 B = 4447.958160 C = 5851.031849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.003 3.997 4 C -0.170 4.170 5 C -0.193 4.193 6 C 0.087 3.913 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.795 5.795 11 Si 0.904 3.096 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.276 1.276 15 C -0.114 4.114 16 C -0.055 4.055 17 C -0.083 4.083 18 C -0.063 4.063 19 C -0.186 4.186 20 C -0.057 4.057 21 C -0.108 4.108 22 C -0.210 4.210 23 C 0.242 3.758 24 N -0.866 5.866 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.280 0.720 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.387 0.613 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.590 -9.280 0.232 9.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.234 6.234 3 C -0.041 4.041 4 C -0.189 4.189 5 C -0.213 4.213 6 C 0.084 3.916 7 C -0.493 4.493 8 H 0.095 0.905 9 C -0.142 4.142 10 N -0.421 5.421 11 Si 0.729 3.271 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.201 1.201 15 C -0.134 4.134 16 C -0.056 4.056 17 C -0.088 4.088 18 C -0.082 4.082 19 C -0.206 4.206 20 C -0.058 4.058 21 C -0.165 4.165 22 C -0.233 4.233 23 C 0.136 3.864 24 N -0.403 5.403 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.128 0.872 38 H 0.214 0.786 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.280 -9.505 0.107 9.592 hybrid contribution -0.076 1.039 -0.235 1.068 sum -1.356 -8.466 -0.129 8.575 Atomic orbital electron populations 1.22691 0.81492 1.01550 1.00106 1.85925 1.18489 1.28089 1.90895 1.18603 0.90882 0.83007 1.11616 1.20358 0.97335 0.92926 1.08262 1.20608 0.94822 0.95084 1.10750 1.17520 0.90547 0.93361 0.90145 1.19461 0.98640 0.94950 1.36283 0.90517 1.25853 0.97972 0.97649 0.92678 1.69834 1.16390 1.33432 1.22429 0.86325 0.79926 0.81629 0.79227 1.18494 1.19707 1.20113 1.21354 0.99970 0.89156 1.02879 1.17757 0.88562 0.92245 1.07064 1.18274 1.01082 0.95389 0.94024 1.20949 0.94507 0.95843 0.96874 1.20537 1.04408 0.96660 0.99005 1.19452 0.96631 0.95810 0.93871 1.20717 0.98749 0.95146 1.01840 1.20180 1.04229 0.98486 1.00411 1.17682 0.89272 0.92100 0.87329 1.42400 1.50762 1.28405 1.18728 0.90234 0.94097 0.94163 0.88620 0.88772 0.90946 0.85364 0.86576 0.87278 0.91847 0.92235 0.92031 0.87239 0.78616 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.80 101.05 0.99 1.57 16 2 O -0.32 -6.35 9.26 -18.55 -0.17 -6.52 16 3 C 0.00 0.06 5.60 -38.43 -0.22 -0.16 16 4 C -0.17 -3.71 8.95 -39.90 -0.36 -4.07 16 5 C -0.19 -4.60 9.72 -39.22 -0.38 -4.98 16 6 C 0.09 2.25 5.57 -106.85 -0.60 1.66 16 7 C -0.46 -12.10 9.03 -37.84 -0.34 -12.44 16 8 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 9 C 0.08 1.88 5.13 -17.35 -0.09 1.79 16 10 N -0.79 -20.46 10.96 55.54 0.61 -19.85 16 11 Si 0.90 18.66 29.60 -169.99 -5.03 13.63 16 12 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 15 C -0.11 -2.91 8.37 -38.55 -0.32 -3.23 16 16 C -0.06 -1.29 4.53 -104.81 -0.48 -1.76 16 17 C -0.08 -1.78 4.95 -104.72 -0.52 -2.30 16 18 C -0.06 -1.24 9.73 -39.27 -0.38 -1.62 16 19 C -0.19 -3.20 9.68 -39.60 -0.38 -3.58 16 20 C -0.06 -0.92 5.88 -104.59 -0.62 -1.54 16 21 C -0.11 -1.31 10.00 36.00 0.36 -0.95 16 22 C -0.21 -3.57 9.53 -39.42 -0.38 -3.95 16 23 C 0.24 4.67 6.45 -83.52 -0.54 4.14 16 24 N -0.87 -15.05 8.65 32.56 0.28 -14.77 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.60 7.64 -51.93 -0.40 0.21 16 27 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 28 H 0.10 1.82 6.26 -52.48 -0.33 1.49 16 29 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.13 3.46 6.16 -52.49 -0.32 3.13 16 32 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 33 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.65 8.08 -51.93 -0.42 0.24 16 36 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.39 5.42 8.84 -40.82 -0.36 5.06 16 39 H 0.40 7.69 6.76 -40.82 -0.28 7.42 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -28.18 326.92 -8.63 -36.81 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -5.01 Total: 17.21 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -4.24 Total: -31.42 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.89 Total: -34.62 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.17 Total: -6.52 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.18 -8.63 -36.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244390984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.429 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds