Wall clock time and date at job start Tue Mar 31 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38405 * 119.85544 * 2 1 4 4 C 1.37914 * 120.14533 * 179.97438 * 3 2 1 5 5 C 1.39635 * 119.85209 * 0.02562 * 4 3 2 6 6 C 1.47965 * 120.14020 * 179.97438 * 5 4 3 7 7 C 1.39891 * 119.45572 * 0.02562 * 6 5 4 8 8 C 1.36604 * 119.46682 * 180.02562 * 7 6 5 9 9 C 1.41295 * 118.41807 * 0.02562 * 8 7 6 10 10 C 1.41052 * 120.55636 * 179.72336 * 9 8 7 11 11 H 1.08002 * 119.99587 * 154.77818 * 10 9 8 12 12 C 1.40024 * 120.00152 * 334.77949 * 10 9 8 13 13 N 1.30785 * 119.99649 * 343.80442 * 12 10 9 14 14 Si 1.86793 * 120.00165 * 163.80647 * 12 10 9 15 15 H 1.48505 * 109.47210 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47410 * 119.99891 * 14 12 10 17 17 H 1.48504 * 109.46967 * 240.00267 * 14 12 10 18 18 C 1.40952 * 118.89100 * 0.02562 * 9 8 7 19 19 C 1.50704 * 119.80259 * 179.97438 * 18 9 8 20 20 N 1.31271 * 120.40166 * 359.97438 * 18 9 8 21 21 C 1.39585 * 119.71007 * 0.24850 * 5 4 3 22 22 C 1.50697 * 120.07267 * 179.72039 * 21 5 4 23 23 O 1.42903 * 109.47229 * 180.02562 * 22 21 5 24 24 C 1.37958 * 119.85362 * 359.49859 * 21 5 4 25 25 H 1.08992 * 109.47371 * 89.99817 * 1 2 3 26 26 H 1.09009 * 109.47301 * 210.00357 * 1 2 3 27 27 H 1.09001 * 109.47100 * 329.99981 * 1 2 3 28 28 H 1.07995 * 119.92820 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.07345 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.26544 * 0.04368 * 7 6 5 31 31 H 1.08002 * 120.79308 * 179.97438 * 8 7 6 32 32 H 0.97000 * 119.99663 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46641 * 89.99490 * 19 18 9 34 34 H 1.08999 * 109.47114 * 209.99379 * 19 18 9 35 35 H 1.08999 * 109.46930 * 330.00483 * 19 18 9 36 36 H 1.08993 * 109.47421 * 300.00516 * 22 21 5 37 37 H 1.09005 * 109.47045 * 60.00544 * 22 21 5 38 38 H 0.96695 * 114.00007 * 180.02562 * 23 22 21 39 39 H 1.07992 * 119.93100 * 180.27679 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2004 0.0000 4 6 3.5751 1.2073 0.0005 5 6 4.2763 -0.0002 0.0005 6 6 5.7559 -0.0002 0.0005 7 6 6.4438 1.2179 0.0011 8 6 7.8099 1.2183 0.0005 9 6 8.4826 -0.0243 -0.0011 10 6 9.8921 -0.0766 -0.0076 11 1 10.4021 -0.9418 0.3897 12 6 10.6300 0.9931 -0.5290 13 7 10.0442 1.8841 -1.2862 14 14 12.4512 1.1475 -0.1431 15 1 12.8700 0.0198 0.7276 16 1 13.2298 1.1118 -1.4072 17 1 12.7017 2.4332 0.5565 18 6 7.7215 -1.2107 -0.0027 19 6 8.4179 -2.5472 -0.0050 20 7 6.4099 -1.1586 -0.0021 21 6 3.5753 -1.2072 -0.0053 22 6 4.3237 -2.5152 -0.0117 23 8 3.3910 -3.5978 -0.0175 24 6 2.1957 -1.2002 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6525 2.1336 0.0004 29 1 4.1116 2.1447 0.0001 30 1 5.8993 2.1506 0.0022 31 1 8.3626 2.1461 0.0005 32 1 10.5553 2.6253 -1.6471 33 1 8.5862 -2.8709 1.0221 34 1 7.7962 -3.2799 -0.5197 35 1 9.3749 -2.4574 -0.5190 36 1 4.9501 -2.5710 -0.9019 37 1 4.9502 -2.5797 0.8780 38 1 3.8035 -4.4723 -0.0214 39 1 1.6521 -2.1333 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244488623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:44 Heat of formation + Delta-G solvation = -11.916998 kcal Electronic energy + Delta-G solvation = -21469.060103 eV Core-core repulsion = 18340.466391 eV Total energy + Delta-G solvation = -3128.593712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.43939 -38.11602 -36.15461 -34.48292 -32.99604 -31.66082 -30.70804 -30.42603 -27.15440 -27.06144 -25.67264 -24.22308 -22.10482 -21.37995 -20.02144 -19.70476 -17.57643 -16.73872 -16.20458 -15.55477 -14.89020 -14.58370 -14.42198 -14.19464 -13.84236 -13.35814 -13.30196 -13.19711 -13.13395 -12.64586 -12.05038 -11.91870 -11.85146 -11.74100 -11.63941 -11.48527 -11.25786 -11.04471 -10.95704 -10.76427 -10.45893 -10.36129 -9.81507 -9.73764 -9.56629 -8.49346 -8.29742 -8.13378 -8.06508 -7.23686 -6.99507 -4.60278 1.56212 1.96118 2.61466 2.85213 2.91316 2.96106 3.10913 3.69144 4.18825 4.58064 4.70516 5.22660 5.26384 5.37024 5.47273 5.53010 5.67834 5.79458 5.95653 6.03939 6.06039 6.07913 6.23241 6.32884 6.35067 6.40839 6.53536 6.55173 6.61643 6.72769 6.77529 6.78406 6.91643 7.03508 7.07807 7.20506 7.31295 7.49156 7.65124 7.74762 7.83203 8.10273 8.25126 8.45630 8.55749 9.46451 9.83009 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.004352 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.496620 B = 6432.546779 C = 7378.205024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.129 4.129 5 C 0.014 3.986 6 C -0.001 4.001 7 C -0.124 4.124 8 C -0.140 4.140 9 C 0.074 3.926 10 C -0.431 4.431 11 H 0.089 0.911 12 C 0.071 3.929 13 N -0.776 5.776 14 Si 0.914 3.086 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.269 1.269 18 C 0.004 3.996 19 C -0.071 4.071 20 N -0.448 5.448 21 C -0.082 4.082 22 C 0.137 3.863 23 O -0.591 6.591 24 C -0.098 4.098 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.287 0.713 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.374 0.626 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -2.419 1.540 7.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C -0.138 4.138 4 C -0.148 4.148 5 C 0.013 3.987 6 C -0.135 4.135 7 C -0.145 4.145 8 C -0.165 4.165 9 C 0.069 3.931 10 C -0.459 4.459 11 H 0.107 0.893 12 C -0.149 4.149 13 N -0.399 5.399 14 Si 0.738 3.262 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.194 1.194 18 C -0.141 4.141 19 C -0.129 4.129 20 N -0.157 5.157 21 C -0.083 4.083 22 C 0.061 3.939 23 O -0.396 6.396 24 C -0.116 4.116 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.220 0.780 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.507 -2.445 1.387 8.017 hybrid contribution 1.799 0.820 0.013 1.978 sum -5.708 -1.624 1.400 6.098 Atomic orbital electron populations 1.20671 0.92010 1.01915 1.01514 1.19796 0.95430 0.93271 1.03760 1.20772 0.93926 0.96939 1.02117 1.21073 0.93686 0.97286 1.02759 1.18428 0.91437 0.91854 0.96988 1.18768 0.90641 0.89108 1.14979 1.21277 0.95241 0.96810 1.01127 1.21318 0.92524 0.98831 1.03802 1.18406 0.94212 0.91490 0.88970 1.19733 0.91145 1.02492 1.32553 0.89252 1.26099 1.01959 0.94370 0.92496 1.69784 1.39102 1.10283 1.20759 0.86144 0.80854 0.79734 0.79499 1.17989 1.19631 1.19412 1.21014 0.88538 0.94687 1.09825 1.20256 0.99350 0.92879 1.00372 1.66910 1.10059 1.28381 1.10345 1.19760 0.93288 0.93816 1.01406 1.21099 0.88176 0.82587 1.02024 1.86336 1.37998 1.17241 1.98022 1.20703 0.93591 0.97180 1.00135 0.91989 0.92129 0.92250 0.86884 0.86095 0.88051 0.85595 0.90232 0.93307 0.93277 0.91426 0.91250 0.91270 0.77994 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.01 36.01 0.36 -0.91 16 2 C -0.12 -1.96 5.89 -104.51 -0.62 -2.57 16 3 C -0.12 -1.93 9.68 -39.64 -0.38 -2.32 16 4 C -0.13 -2.37 9.42 -39.18 -0.37 -2.74 16 5 C 0.01 0.29 5.88 -104.89 -0.62 -0.33 16 6 C 0.00 -0.03 6.72 -82.75 -0.56 -0.58 16 7 C -0.12 -2.86 9.38 -39.55 -0.37 -3.23 16 8 C -0.14 -3.45 8.72 -39.01 -0.34 -3.79 16 9 C 0.07 1.84 5.58 -106.64 -0.60 1.25 16 10 C -0.43 -10.30 8.14 -37.85 -0.31 -10.60 16 11 H 0.09 2.01 6.86 -52.49 -0.36 1.65 16 12 C 0.07 1.63 5.19 -17.33 -0.09 1.54 16 13 N -0.78 -18.39 10.94 55.55 0.61 -17.78 16 14 Si 0.91 16.90 29.59 -169.99 -5.03 11.87 16 15 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 16 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 17 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 18 C 0.00 0.11 6.86 -81.80 -0.56 -0.46 16 19 C -0.07 -1.38 9.58 36.01 0.35 -1.04 16 20 N -0.45 -10.37 6.03 -5.39 -0.03 -10.40 16 21 C -0.08 -1.62 5.91 -104.22 -0.62 -2.24 16 22 C 0.14 2.56 5.61 36.00 0.20 2.76 16 23 O -0.59 -9.45 12.14 -35.23 -0.43 -9.87 16 24 C -0.10 -1.75 9.02 -39.63 -0.36 -2.11 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.68 8.08 -51.92 -0.42 0.26 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.12 2.06 6.15 -52.49 -0.32 1.74 16 30 H 0.10 2.07 6.15 -52.49 -0.32 1.75 16 31 H 0.13 3.14 6.26 -52.49 -0.33 2.81 16 32 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.30 6.75 -51.93 -0.35 0.94 16 36 H 0.07 1.38 7.17 -51.93 -0.37 1.01 16 37 H 0.07 1.36 7.16 -51.93 -0.37 0.99 16 38 H 0.37 4.17 9.12 45.56 0.42 4.59 16 39 H 0.12 2.10 7.00 -52.49 -0.37 1.73 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -27.41 321.17 -8.96 -36.38 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.05 Total: 12.33 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -4.87 Total: -27.37 kcal Atomic # 7 Polarization: -28.76 SS G_CDS: 0.58 Total: -28.18 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.43 Total: -9.87 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.41 -8.96 -36.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244488623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.458 kcal (2) G-P(sol) polarization free energy of solvation -27.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds