Wall clock time and date at job start Tue Mar 31 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37959 * 120.07191 * 2 1 4 4 C 1.38372 * 120.14541 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.85395 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.46891 * 90.00397 * 5 4 3 7 7 C 1.38410 * 120.29048 * 359.97438 * 4 3 2 8 8 C 1.37913 * 120.14593 * 359.73592 * 7 4 3 9 9 C 1.39583 * 120.07573 * 179.97438 * 2 1 3 10 10 C 1.47965 * 120.14404 * 0.02562 * 9 2 1 11 11 C 1.39898 * 119.45175 * 173.58811 * 10 9 2 12 12 C 1.36603 * 119.46450 * 180.02562 * 11 10 9 13 13 C 1.41299 * 118.42071 * 359.97438 * 12 11 10 14 14 C 1.41049 * 120.55798 * 179.72509 * 13 12 11 15 15 H 1.08001 * 119.99787 * 151.98490 * 14 13 12 16 16 C 1.40025 * 119.99905 * 331.98296 * 14 13 12 17 17 N 1.30788 * 120.00224 * 349.05577 * 16 14 13 18 18 Si 1.86800 * 119.99801 * 169.05385 * 16 14 13 19 19 H 1.48502 * 109.47137 * 90.00180 * 18 16 14 20 20 H 1.48506 * 109.46820 * 209.99935 * 18 16 14 21 21 H 1.48494 * 109.47441 * 329.99713 * 18 16 14 22 22 C 1.40954 * 118.88647 * 0.02562 * 13 12 11 23 23 C 1.50703 * 119.79555 * 179.97438 * 22 13 12 24 24 N 1.31266 * 120.40375 * 359.97438 * 22 13 12 25 25 H 1.08999 * 109.46775 * 263.01925 * 1 2 3 26 26 H 1.08999 * 109.47010 * 23.02100 * 1 2 3 27 27 H 1.08999 * 109.46937 * 143.02017 * 1 2 3 28 28 H 1.08002 * 119.92968 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46760 * 210.00436 * 5 4 3 30 30 H 1.09003 * 109.46941 * 330.00444 * 5 4 3 31 31 H 0.96702 * 113.99235 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.92291 * 179.97438 * 7 4 3 33 33 H 1.08005 * 120.07247 * 180.25440 * 8 7 4 34 34 H 1.07998 * 120.26124 * 359.97438 * 11 10 9 35 35 H 1.08008 * 120.79006 * 179.97438 * 12 11 10 36 36 H 0.97004 * 120.00312 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.46597 * 90.00536 * 23 22 13 38 38 H 1.08998 * 109.46957 * 209.99591 * 23 22 13 39 39 H 1.08996 * 109.47330 * 330.00604 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5820 1.1957 0.0005 5 6 4.3305 2.5037 0.0011 6 8 4.5667 2.9167 1.3485 7 6 4.2817 0.0014 0.0016 8 6 3.6028 -1.1990 0.0076 9 6 2.2065 -1.2079 0.0005 10 6 1.4716 -2.4921 0.0005 11 6 2.1808 -3.6905 -0.1350 12 6 1.5025 -4.8762 -0.1355 13 6 0.0966 -4.8468 0.0027 14 6 -0.6492 -6.0440 0.0022 15 1 -1.5887 -6.0952 0.5325 16 6 -0.1715 -7.1661 -0.6858 17 7 0.8460 -7.0503 -1.4993 18 14 -0.9876 -8.8286 -0.4418 19 1 -2.0801 -8.9942 -1.4340 20 1 0.0177 -9.9056 -0.6281 21 1 -1.5492 -8.9078 0.9306 22 6 -0.5487 -3.6007 0.1347 23 6 -2.0475 -3.5454 0.2828 24 7 0.1477 -2.4880 0.1294 25 1 -0.3633 -0.1249 1.0201 26 1 -0.3633 0.9458 -0.4019 27 1 -0.3633 -0.8209 -0.6182 28 1 1.6583 2.1292 -0.0004 29 1 5.2836 2.3770 -0.5125 30 1 3.7387 3.2612 -0.5127 31 1 5.0451 3.7535 1.4252 32 1 5.3617 0.0097 0.0016 33 1 4.1500 -2.1302 0.0126 34 1 3.2556 -3.6780 -0.2391 35 1 2.0284 -5.8139 -0.2392 36 1 1.1767 -7.8276 -1.9762 37 1 -2.3099 -3.5890 1.3398 38 1 -2.4209 -2.6156 -0.1462 39 1 -2.4955 -4.3916 -0.2380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244579401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:13 Heat of formation + Delta-G solvation = -7.483961 kcal Electronic energy + Delta-G solvation = -21212.594843 eV Core-core repulsion = 18084.193362 eV Total energy + Delta-G solvation = -3128.401481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.44032 -38.21645 -36.53339 -34.34768 -32.57629 -32.30164 -30.75023 -30.18137 -27.02329 -26.59516 -26.33751 -24.12208 -22.11146 -21.42863 -20.05299 -19.67191 -17.49525 -17.42344 -16.20134 -15.64796 -15.25056 -14.90149 -14.49271 -14.05794 -13.64569 -13.50646 -13.31401 -12.99554 -12.75692 -12.48551 -12.34372 -11.92453 -11.71454 -11.61267 -11.49807 -11.32299 -11.26366 -11.05285 -10.83252 -10.73363 -10.52850 -10.42832 -10.05100 -9.78852 -9.55855 -8.57447 -8.29012 -8.19525 -7.85129 -7.19979 -6.94111 -4.58213 1.48285 1.94679 2.62378 2.89007 2.93519 2.97610 3.11115 3.72939 4.08999 4.52475 4.71309 5.07662 5.14514 5.30860 5.40697 5.47343 5.50072 5.56702 5.82733 5.98481 6.04698 6.17865 6.28208 6.42056 6.47838 6.54342 6.58633 6.62477 6.64861 6.78937 6.81817 6.92317 6.96836 7.00973 7.15248 7.30312 7.38137 7.46999 7.59696 7.68216 7.81633 7.87429 8.29323 8.50624 8.59687 9.51054 9.90246 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034405 B = 0.003772 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.637456 B = 7421.908611 C = 8070.970796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.079 4.079 3 C -0.101 4.101 4 C -0.125 4.125 5 C 0.124 3.876 6 O -0.568 6.568 7 C -0.104 4.104 8 C -0.132 4.132 9 C 0.021 3.979 10 C 0.002 3.998 11 C -0.127 4.127 12 C -0.136 4.136 13 C 0.074 3.926 14 C -0.432 4.432 15 H 0.088 0.912 16 C 0.070 3.930 17 N -0.784 5.784 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.258 1.258 22 C 0.005 3.995 23 C -0.072 4.072 24 N -0.439 5.439 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.373 0.627 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.286 0.714 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 9.009 0.494 9.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.080 4.080 3 C -0.119 4.119 4 C -0.125 4.125 5 C 0.047 3.953 6 O -0.373 6.373 7 C -0.122 4.122 8 C -0.151 4.151 9 C 0.020 3.980 10 C -0.131 4.131 11 C -0.148 4.148 12 C -0.161 4.161 13 C 0.069 3.931 14 C -0.461 4.461 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.408 5.408 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.139 4.139 23 C -0.129 4.129 24 N -0.147 5.147 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.219 0.781 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.984 9.072 0.523 9.564 hybrid contribution 0.718 -1.135 -0.272 1.371 sum 3.702 7.937 0.250 8.761 Atomic orbital electron populations 1.21023 0.90466 1.01301 1.03066 1.20029 0.96818 0.91574 0.99611 1.20756 0.93073 0.97277 1.00807 1.19397 0.93607 0.93510 1.06017 1.20924 0.97599 0.93542 0.83214 1.86635 1.80023 1.43631 1.27034 1.20722 0.98880 0.91838 1.00738 1.21141 0.93547 0.97654 1.02787 1.18631 0.91936 0.91787 0.95607 1.18788 0.89520 0.90650 1.14180 1.21311 0.98774 0.93451 1.01227 1.21368 0.94202 0.97062 1.03446 1.18432 0.92463 0.93054 0.89124 1.19674 1.05871 0.94346 1.26198 0.89420 1.26079 0.94387 1.01459 0.93052 1.69753 1.20495 1.32540 1.17967 0.86162 0.79665 0.79911 0.80276 1.19143 1.19897 1.18176 1.21136 0.95151 0.88214 1.09442 1.20262 0.91146 1.01170 1.00336 1.67062 1.06899 1.30502 1.10269 0.91852 0.94739 0.87809 0.86916 0.93333 0.93344 0.78110 0.86869 0.86050 0.88087 0.85402 0.90306 0.93285 0.93121 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 8.56 36.01 0.31 -1.58 16 2 C -0.08 -1.54 5.91 -104.22 -0.62 -2.15 16 3 C -0.10 -1.72 9.31 -39.63 -0.37 -2.09 16 4 C -0.12 -2.00 5.52 -104.51 -0.58 -2.57 16 5 C 0.12 1.52 7.16 36.01 0.26 1.77 16 6 O -0.57 -7.11 13.64 -35.23 -0.48 -7.59 16 7 C -0.10 -1.70 9.68 -39.64 -0.38 -2.08 16 8 C -0.13 -2.44 9.41 -39.18 -0.37 -2.81 16 9 C 0.02 0.44 5.87 -104.89 -0.62 -0.17 16 10 C 0.00 0.05 6.67 -82.75 -0.55 -0.50 16 11 C -0.13 -2.96 9.37 -39.55 -0.37 -3.33 16 12 C -0.14 -3.39 8.70 -39.01 -0.34 -3.73 16 13 C 0.07 1.87 5.57 -106.64 -0.59 1.27 16 14 C -0.43 -10.47 8.08 -37.85 -0.31 -10.78 16 15 H 0.09 2.00 6.96 -52.49 -0.37 1.64 16 16 C 0.07 1.61 5.27 -17.33 -0.09 1.52 16 17 N -0.78 -18.82 10.83 55.55 0.60 -18.21 16 18 Si 0.92 17.20 29.57 -169.99 -5.03 12.17 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C 0.01 0.13 6.86 -81.80 -0.56 -0.43 16 23 C -0.07 -1.43 9.59 36.01 0.35 -1.09 16 24 N -0.44 -10.35 6.08 -5.39 -0.03 -10.38 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 27 H 0.10 2.14 5.65 -51.93 -0.29 1.84 16 28 H 0.11 1.67 8.05 -52.49 -0.42 1.25 16 29 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.37 2.55 9.12 45.56 0.42 2.97 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 2.08 6.21 -52.48 -0.33 1.76 16 34 H 0.10 2.08 6.20 -52.49 -0.33 1.76 16 35 H 0.13 3.23 6.27 -52.48 -0.33 2.90 16 36 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.31 6.81 -51.93 -0.35 0.96 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -28.38 323.23 -8.98 -37.36 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.08 Total: 10.52 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -4.83 Total: -28.74 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.57 Total: -28.59 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.48 Total: -7.59 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.38 -8.98 -37.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244579401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.877 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds