Wall clock time and date at job start Tue Mar 31 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37959 * 120.07191 * 2 1 4 4 C 1.38372 * 120.14541 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.85395 * 180.02562 * 4 3 2 6 6 O 1.42894 * 109.46891 * 90.00397 * 5 4 3 7 7 C 1.38410 * 120.29048 * 359.97438 * 4 3 2 8 8 C 1.37913 * 120.14593 * 359.73592 * 7 4 3 9 9 C 1.39583 * 120.07573 * 179.97438 * 2 1 3 10 10 C 1.47965 * 120.14404 * 0.02562 * 9 2 1 11 11 C 1.39898 * 119.45175 * 173.58811 * 10 9 2 12 12 C 1.36603 * 119.46450 * 180.02562 * 11 10 9 13 13 C 1.41299 * 118.42071 * 359.97438 * 12 11 10 14 14 C 1.41049 * 120.55798 * 179.72509 * 13 12 11 15 15 H 1.08001 * 119.99787 * 151.98490 * 14 13 12 16 16 C 1.40025 * 119.99905 * 331.98296 * 14 13 12 17 17 N 1.30788 * 120.00224 * 349.05577 * 16 14 13 18 18 Si 1.86800 * 119.99801 * 169.05385 * 16 14 13 19 19 H 1.48502 * 109.47137 * 90.00180 * 18 16 14 20 20 H 1.48506 * 109.46820 * 209.99935 * 18 16 14 21 21 H 1.48494 * 109.47441 * 329.99713 * 18 16 14 22 22 C 1.40954 * 118.88647 * 0.02562 * 13 12 11 23 23 C 1.50703 * 119.79555 * 179.97438 * 22 13 12 24 24 N 1.31266 * 120.40375 * 359.97438 * 22 13 12 25 25 H 1.08999 * 109.46775 * 263.01925 * 1 2 3 26 26 H 1.08999 * 109.47010 * 23.02100 * 1 2 3 27 27 H 1.08999 * 109.46937 * 143.02017 * 1 2 3 28 28 H 1.08002 * 119.92968 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46760 * 210.00436 * 5 4 3 30 30 H 1.09003 * 109.46941 * 330.00444 * 5 4 3 31 31 H 0.96702 * 113.99235 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.92291 * 179.97438 * 7 4 3 33 33 H 1.08005 * 120.07247 * 180.25440 * 8 7 4 34 34 H 1.07998 * 120.26124 * 359.97438 * 11 10 9 35 35 H 1.08008 * 120.79006 * 179.97438 * 12 11 10 36 36 H 0.97004 * 120.00312 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.46597 * 90.00536 * 23 22 13 38 38 H 1.08998 * 109.46957 * 209.99591 * 23 22 13 39 39 H 1.08996 * 109.47330 * 330.00604 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5820 1.1957 0.0005 5 6 4.3305 2.5037 0.0011 6 8 4.5667 2.9167 1.3485 7 6 4.2817 0.0014 0.0016 8 6 3.6028 -1.1990 0.0076 9 6 2.2065 -1.2079 0.0005 10 6 1.4716 -2.4921 0.0005 11 6 2.1808 -3.6905 -0.1350 12 6 1.5025 -4.8762 -0.1355 13 6 0.0966 -4.8468 0.0027 14 6 -0.6492 -6.0440 0.0022 15 1 -1.5887 -6.0952 0.5325 16 6 -0.1715 -7.1661 -0.6858 17 7 0.8460 -7.0503 -1.4993 18 14 -0.9876 -8.8286 -0.4418 19 1 -2.0801 -8.9942 -1.4340 20 1 0.0177 -9.9056 -0.6281 21 1 -1.5492 -8.9078 0.9306 22 6 -0.5487 -3.6007 0.1347 23 6 -2.0475 -3.5454 0.2828 24 7 0.1477 -2.4880 0.1294 25 1 -0.3633 -0.1249 1.0201 26 1 -0.3633 0.9458 -0.4019 27 1 -0.3633 -0.8209 -0.6182 28 1 1.6583 2.1292 -0.0004 29 1 5.2836 2.3770 -0.5125 30 1 3.7387 3.2612 -0.5127 31 1 5.0451 3.7535 1.4252 32 1 5.3617 0.0097 0.0016 33 1 4.1500 -2.1302 0.0126 34 1 3.2556 -3.6780 -0.2391 35 1 2.0284 -5.8139 -0.2392 36 1 1.1767 -7.8276 -1.9762 37 1 -2.3099 -3.5890 1.3398 38 1 -2.4209 -2.6156 -0.1462 39 1 -2.4955 -4.3916 -0.2380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244579401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:12 Heat of formation + Delta-G solvation = -23.257606 kcal Electronic energy + Delta-G solvation = -21213.278840 eV Core-core repulsion = 18084.193362 eV Total energy + Delta-G solvation = -3129.085477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98668 -39.75013 -37.55706 -36.05134 -34.10022 -33.85029 -32.40064 -31.71540 -28.73916 -28.08087 -27.63846 -25.66541 -23.56965 -23.12807 -21.68870 -21.08417 -19.28439 -18.29857 -17.76236 -17.19107 -16.79347 -16.18956 -15.92814 -15.62189 -15.24604 -14.86326 -14.74518 -14.40321 -14.30844 -13.81644 -13.76441 -13.59565 -13.34878 -13.12433 -13.03545 -12.85435 -12.81349 -12.56670 -12.45255 -12.20098 -11.90378 -11.80063 -11.51235 -11.25303 -10.90295 -10.22899 -10.01636 -9.69190 -9.51986 -8.90079 -8.65927 -6.40888 -0.00562 0.56890 0.94721 1.13469 1.39234 1.51657 1.56022 2.16210 2.59959 2.96445 3.64487 3.69379 3.73526 3.94393 4.09727 4.17756 4.29246 4.41436 4.47676 4.56771 4.58055 4.63395 4.79089 4.91939 4.92390 4.98501 5.01319 5.05307 5.11371 5.16624 5.19755 5.27099 5.46347 5.51628 5.62631 5.69013 5.81362 5.86265 5.99354 6.09446 6.21843 6.48068 6.71271 6.78303 6.99265 7.69445 8.20841 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034405 B = 0.003772 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.637456 B = 7421.908611 C = 8070.970796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.093 4.093 3 C -0.106 4.106 4 C -0.119 4.119 5 C 0.125 3.875 6 O -0.591 6.591 7 C -0.106 4.106 8 C -0.137 4.137 9 C -0.019 4.019 10 C -0.004 4.004 11 C -0.138 4.138 12 C -0.157 4.157 13 C 0.043 3.957 14 C -0.459 4.459 15 H 0.094 0.906 16 C 0.031 3.969 17 N -0.818 5.818 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.254 1.254 22 C -0.015 4.015 23 C -0.064 4.064 24 N -0.443 5.443 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.138 0.862 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.292 0.708 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 10.872 0.594 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.124 4.124 4 C -0.119 4.119 5 C 0.048 3.952 6 O -0.400 6.400 7 C -0.124 4.124 8 C -0.156 4.156 9 C -0.020 4.020 10 C -0.138 4.138 11 C -0.158 4.158 12 C -0.182 4.182 13 C 0.039 3.961 14 C -0.487 4.487 15 H 0.112 0.888 16 C -0.185 4.185 17 N -0.443 5.443 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.178 1.178 22 C -0.159 4.159 23 C -0.121 4.121 24 N -0.152 5.152 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.156 0.844 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.249 0.751 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.661 10.971 0.627 11.583 hybrid contribution 0.672 -1.442 -0.299 1.618 sum 4.333 9.529 0.328 10.473 Atomic orbital electron populations 1.20887 0.90397 1.01762 1.02127 1.20233 0.97210 0.92080 0.99916 1.21057 0.93901 0.97237 1.00156 1.19976 0.93615 0.95431 1.02880 1.20961 0.98661 0.91901 0.83628 1.86547 1.80773 1.45651 1.27024 1.21093 1.00461 0.91152 0.99657 1.21316 0.92794 0.99040 1.02462 1.18740 0.93038 0.91243 0.98934 1.19345 0.89788 0.91964 1.12729 1.21537 0.99838 0.93196 1.01217 1.21391 0.94644 0.97185 1.04973 1.18789 0.92879 0.94233 0.90218 1.19912 1.06502 0.94993 1.27341 0.88781 1.26945 0.94738 1.04736 0.92111 1.69814 1.21848 1.33843 1.18768 0.85074 0.78666 0.75068 0.80247 1.18453 1.19304 1.17789 1.21739 0.96997 0.88038 1.09164 1.20246 0.88801 1.01818 1.01268 1.67236 1.07140 1.30218 1.10612 0.92727 0.91966 0.90261 0.84449 0.90944 0.91184 0.75144 0.83873 0.85669 0.86228 0.86579 0.89663 0.91997 0.91870 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.48 8.56 71.24 0.61 -2.87 16 2 C -0.09 -3.55 5.91 -19.60 -0.12 -3.66 16 3 C -0.11 -3.32 9.31 22.24 0.21 -3.12 16 4 C -0.12 -3.40 5.52 -19.79 -0.11 -3.51 16 5 C 0.13 2.48 7.16 71.24 0.51 2.99 16 6 O -0.59 -12.31 13.64 -148.98 -2.03 -14.35 16 7 C -0.11 -3.19 9.68 22.23 0.22 -2.97 16 8 C -0.14 -4.96 9.41 22.53 0.21 -4.75 16 9 C -0.02 -0.79 5.87 -20.04 -0.12 -0.90 16 10 C 0.00 -0.19 6.67 41.95 0.28 0.09 16 11 C -0.14 -6.69 9.37 22.29 0.21 -6.49 16 12 C -0.16 -8.24 8.70 22.64 0.20 -8.04 16 13 C 0.04 2.29 5.57 -21.17 -0.12 2.17 16 14 C -0.46 -23.00 8.08 23.39 0.19 -22.81 16 15 H 0.09 4.41 6.96 -2.91 -0.02 4.39 16 16 C 0.03 1.46 5.27 85.28 0.45 1.91 16 17 N -0.82 -40.64 10.83 21.84 0.24 -40.40 16 18 Si 0.99 35.51 29.57 68.60 2.03 37.54 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 20 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 22 C -0.02 -0.75 6.86 43.31 0.30 -0.45 16 23 C -0.06 -2.60 9.59 71.24 0.68 -1.91 16 24 N -0.44 -21.60 6.08 -170.96 -1.04 -22.64 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 27 H 0.08 3.32 5.65 -2.39 -0.01 3.30 16 28 H 0.14 3.57 8.05 -2.91 -0.02 3.55 16 29 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 30 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.40 3.74 9.12 -74.06 -0.68 3.06 16 32 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.13 4.28 6.21 -2.91 -0.02 4.26 16 34 H 0.12 5.12 6.20 -2.91 -0.02 5.11 16 35 H 0.12 6.23 6.27 -2.91 -0.02 6.21 16 36 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.71 6.81 -2.39 -0.02 2.69 16 Total: -1.00 -63.47 323.23 3.20 -60.27 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.41 Total: 33.90 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 3.60 Total: -54.33 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.80 Total: -63.04 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -2.03 Total: -14.35 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -63.47 3.20 -60.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244579401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.014 kcal (2) G-P(sol) polarization free energy of solvation -63.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds