Wall clock time and date at job start Tue Mar 31 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38870 * 119.24826 * 2 1 4 4 C 1.36884 * 119.80120 * 179.97438 * 3 2 1 5 5 C 1.41125 * 118.39259 * 359.97438 * 4 3 2 6 6 C 1.40886 * 120.71870 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99708 * 153.86678 * 6 5 4 8 8 C 1.40071 * 119.99744 * 333.86043 * 6 5 4 9 9 N 1.30771 * 120.00369 * 343.74742 * 8 6 5 10 10 Si 1.86804 * 119.99814 * 163.74677 * 8 6 5 11 11 H 1.48501 * 109.47331 * 90.00007 * 10 8 6 12 12 H 1.48496 * 109.47344 * 209.99947 * 10 8 6 13 13 H 1.48504 * 109.47145 * 330.00219 * 10 8 6 14 14 C 1.41867 * 118.56160 * 0.02562 * 5 4 3 15 15 C 1.47821 * 119.99107 * 180.02562 * 14 5 4 16 16 C 1.39693 * 120.15003 * 308.20652 * 15 14 5 17 17 C 1.37901 * 119.84625 * 179.74364 * 16 15 14 18 18 C 1.38424 * 120.14731 * 0.53516 * 17 16 15 19 19 C 1.50703 * 119.84237 * 179.71926 * 18 17 16 20 20 O 1.42906 * 109.46951 * 270.02062 * 19 18 17 21 21 C 1.38373 * 120.30846 * 359.73877 * 18 17 16 22 22 C 1.37934 * 120.15492 * 359.97438 * 21 18 17 23 23 C 1.50692 * 120.08127 * 179.97438 * 22 21 18 24 24 N 1.31737 * 119.24914 * 179.71874 * 2 1 3 25 25 H 1.08994 * 109.46974 * 90.00231 * 1 2 3 26 26 H 1.09005 * 109.46982 * 330.00563 * 1 2 3 27 27 H 1.08998 * 109.47080 * 210.00278 * 1 2 3 28 28 H 1.07997 * 120.09782 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.80412 * 180.02562 * 4 3 2 30 30 H 0.97000 * 119.99664 * 179.97438 * 9 8 6 31 31 H 1.08000 * 120.07971 * 0.02562 * 16 15 14 32 32 H 1.07994 * 119.92883 * 180.25067 * 17 16 15 33 33 H 1.09001 * 109.47220 * 30.01936 * 19 18 17 34 34 H 1.09003 * 109.46927 * 150.02388 * 19 18 17 35 35 H 0.96703 * 113.99805 * 180.02562 * 20 19 18 36 36 H 1.08007 * 119.92377 * 179.97438 * 21 18 17 37 37 H 1.09005 * 109.47295 * 267.72147 * 23 22 21 38 38 H 1.09001 * 109.47534 * 27.71923 * 23 22 21 39 39 H 1.09004 * 109.47792 * 147.71837 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1856 1.2117 0.0000 4 6 3.5543 1.2249 0.0005 5 6 4.2374 -0.0101 0.0016 6 6 5.6455 -0.0537 0.0027 7 1 6.1589 -0.9095 0.4155 8 6 6.3796 1.0129 -0.5316 9 7 5.7924 1.8879 -1.3059 10 14 8.1976 1.1854 -0.1380 11 1 8.9956 0.4525 -1.1534 12 1 8.5737 2.6218 -0.1554 13 1 8.4686 0.6190 1.2077 14 6 3.4752 -1.2067 0.0016 15 6 4.1582 -2.5177 0.0033 16 6 5.1460 -2.7954 -0.9446 17 6 5.7828 -4.0186 -0.9340 18 6 5.4373 -4.9741 0.0062 19 6 6.1333 -6.3108 0.0075 20 8 5.4188 -7.2206 -0.8314 21 6 4.4557 -4.7077 0.9444 22 6 3.8148 -3.4863 0.9489 23 6 2.7456 -3.1982 1.9711 24 7 2.1507 -1.1494 0.0056 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 0.8901 0.5138 27 1 -0.3633 -0.8899 0.5139 28 1 1.6349 2.1407 -0.0004 29 1 4.0984 2.1578 0.0010 30 1 6.3008 2.6267 -1.6756 31 1 5.4137 -2.0523 -1.6812 32 1 6.5496 -4.2332 -1.6636 33 1 7.1495 -6.1917 -0.3682 34 1 6.1653 -6.7027 1.0242 35 1 5.8108 -8.1034 -0.8778 36 1 4.1908 -5.4579 1.6748 37 1 1.7707 -3.4627 1.5615 38 1 2.9339 -3.7861 2.8694 39 1 2.7588 -2.1375 2.2217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244579887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:52 Heat of formation + Delta-G solvation = -16.827757 kcal Electronic energy + Delta-G solvation = -21717.254943 eV Core-core repulsion = 18588.448284 eV Total energy + Delta-G solvation = -3128.806658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.30324 -38.09882 -36.40248 -34.37188 -32.71803 -31.76898 -30.78614 -29.91360 -27.83726 -26.40414 -25.88733 -23.96190 -21.83353 -21.33766 -20.44609 -19.46513 -17.41373 -17.32307 -15.91180 -15.65514 -15.23350 -14.75158 -14.40694 -14.01327 -13.69506 -13.39273 -13.16022 -12.95970 -12.73284 -12.43699 -12.34453 -11.84449 -11.74137 -11.59478 -11.50623 -11.43707 -11.18882 -11.03944 -10.96988 -10.65630 -10.42838 -10.36186 -9.93601 -9.81720 -9.42264 -8.49295 -8.06799 -8.02039 -7.92638 -7.33423 -6.92873 -4.52314 1.77732 2.13354 2.58258 2.91573 2.96618 3.01514 3.12974 3.78116 4.25357 4.48690 4.78466 5.20356 5.26243 5.40179 5.49358 5.54772 5.64056 5.72216 5.89454 6.04350 6.09199 6.14282 6.31592 6.35551 6.41553 6.44365 6.51251 6.59405 6.69707 6.75002 6.89873 6.92598 7.01741 7.05582 7.16360 7.27425 7.49358 7.62315 7.67514 7.71016 7.85727 7.90213 8.35352 8.56795 8.64705 9.58119 9.94408 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.007243 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.087294 B = 3864.632038 C = 5783.220204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.012 4.012 3 C -0.142 4.142 4 C -0.130 4.130 5 C 0.084 3.916 6 C -0.437 4.437 7 H 0.087 0.913 8 C 0.075 3.925 9 N -0.784 5.784 10 Si 0.908 3.092 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.258 1.258 14 C 0.015 3.985 15 C 0.035 3.965 16 C -0.093 4.093 17 C -0.113 4.113 18 C -0.116 4.116 19 C 0.124 3.876 20 O -0.568 6.568 21 C -0.107 4.107 22 C -0.082 4.082 23 C -0.095 4.095 24 N -0.442 5.442 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.285 0.715 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.372 0.628 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -7.479 2.778 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.154 4.154 3 C -0.162 4.162 4 C -0.156 4.156 5 C 0.080 3.920 6 C -0.466 4.466 7 H 0.105 0.895 8 C -0.144 4.144 9 N -0.408 5.408 10 Si 0.732 3.268 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.182 1.182 14 C -0.123 4.123 15 C 0.034 3.966 16 C -0.112 4.112 17 C -0.131 4.131 18 C -0.117 4.117 19 C 0.047 3.953 20 O -0.373 6.373 21 C -0.126 4.126 22 C -0.082 4.082 23 C -0.152 4.152 24 N -0.150 5.150 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.218 0.782 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.719 -7.479 2.562 7.938 hybrid contribution 1.781 0.678 0.051 1.906 sum 2.500 -6.801 2.613 7.703 Atomic orbital electron populations 1.20272 0.91601 1.00745 1.00446 1.20240 0.94800 0.88552 1.11791 1.21238 0.95399 0.97123 1.02438 1.21367 0.92625 0.98718 1.02891 1.18317 0.94057 0.90796 0.88865 1.19579 0.91020 1.03133 1.32833 0.89468 1.26008 1.01514 0.94315 0.92595 1.69766 1.38974 1.11109 1.20972 0.86289 0.81505 0.78480 0.80565 1.19106 1.19913 1.18152 1.19375 0.88341 0.91119 1.13499 1.18365 0.93677 0.91499 0.93059 1.21309 0.95565 0.95929 0.98363 1.20788 1.00479 0.93698 0.98123 1.19391 0.99704 0.94316 0.98261 1.20942 0.93553 0.87659 0.93170 1.86640 1.55600 1.24727 1.70305 1.20615 0.96452 0.96240 0.99246 1.19975 0.97766 0.93357 0.97147 1.20588 0.96962 1.02080 0.95523 1.66886 1.09525 1.29087 1.09550 0.93255 0.93008 0.92630 0.88442 0.85709 0.90394 0.85320 0.86918 0.93289 0.93405 0.78219 0.87076 0.91362 0.93425 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.15 36.01 0.37 -0.95 16 2 C -0.01 -0.28 6.79 -82.40 -0.56 -0.84 16 3 C -0.14 -3.23 9.64 -39.84 -0.38 -3.62 16 4 C -0.13 -3.25 8.73 -38.98 -0.34 -3.59 16 5 C 0.08 2.16 5.56 -106.41 -0.59 1.57 16 6 C -0.44 -10.86 7.25 -37.89 -0.27 -11.13 16 7 H 0.09 2.15 6.69 -52.49 -0.35 1.79 16 8 C 0.08 1.77 5.18 -17.32 -0.09 1.68 16 9 N -0.78 -18.98 11.01 55.55 0.61 -18.37 16 10 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 11 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 12 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 13 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 14 C 0.01 0.37 5.36 -82.24 -0.44 -0.07 16 15 C 0.03 0.79 5.00 -104.90 -0.52 0.27 16 16 C -0.09 -1.98 8.05 -39.16 -0.32 -2.29 16 17 C -0.11 -2.09 9.68 -39.64 -0.38 -2.47 16 18 C -0.12 -2.02 5.52 -104.50 -0.58 -2.60 16 19 C 0.12 1.65 7.16 36.01 0.26 1.91 16 20 O -0.57 -7.67 13.64 -35.23 -0.48 -8.15 16 21 C -0.11 -1.93 9.33 -39.64 -0.37 -2.30 16 22 C -0.08 -1.66 5.91 -104.21 -0.62 -2.27 16 23 C -0.09 -1.76 8.91 36.00 0.32 -1.44 16 24 N -0.44 -10.68 8.86 -5.44 -0.05 -10.73 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.13 3.14 6.33 -52.49 -0.33 2.81 16 30 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 31 H 0.13 2.86 7.45 -52.49 -0.39 2.47 16 32 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.37 2.89 9.12 45.56 0.42 3.30 16 36 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 39 H 0.07 1.37 6.89 -51.93 -0.36 1.01 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -28.75 328.35 -8.89 -37.64 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.37 Total: 10.11 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -4.52 Total: -28.15 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.56 Total: -29.10 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.48 Total: -8.15 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.75 -8.89 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244579887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.812 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds