Wall clock time and date at job start Tue Mar 31 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38425 * 119.86114 * 2 1 4 4 C 1.38141 * 120.33675 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.97768 * 179.97438 * 4 3 2 6 6 C 1.38764 * 120.04716 * 0.27194 * 4 3 2 7 7 N 1.39483 * 120.13980 * 179.70503 * 6 4 3 8 8 C 1.40029 * 119.71404 * 359.44056 * 6 4 3 9 9 C 1.48212 * 120.15976 * 180.29243 * 8 6 4 10 10 C 1.39324 * 120.15976 * 244.99036 * 9 8 6 11 11 C 1.38008 * 119.94099 * 179.75019 * 10 9 8 12 12 C 1.38454 * 120.26906 * 0.52994 * 11 10 9 13 13 C 1.38125 * 120.33153 * 359.74340 * 12 11 10 14 14 C 1.38738 * 120.05646 * 359.97438 * 13 12 11 15 15 O 1.35671 * 120.13926 * 179.97438 * 14 13 12 16 16 C 1.34814 * 116.99536 * 354.40171 * 15 14 13 17 17 H 1.07994 * 120.00160 * 5.06375 * 16 15 14 18 18 C 1.38637 * 119.99328 * 185.06322 * 16 15 14 19 19 N 1.31559 * 120.00399 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99691 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46989 * 59.99740 * 20 18 16 22 22 H 1.48496 * 109.47150 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47203 * 299.99877 * 20 18 16 24 24 C 1.38003 * 119.85640 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47159 * 89.99311 * 1 2 3 26 26 H 1.08998 * 109.47028 * 210.00323 * 1 2 3 27 27 H 1.09001 * 109.46500 * 330.00222 * 1 2 3 28 28 H 1.08000 * 119.82733 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47273 * 90.00128 * 5 4 3 30 30 H 1.09001 * 109.47253 * 330.00125 * 5 4 3 31 31 H 1.08998 * 109.47598 * 210.00322 * 5 4 3 32 32 H 0.97004 * 119.99913 * 359.97438 * 7 6 4 33 33 H 0.97000 * 119.99705 * 180.02562 * 7 6 4 34 34 H 1.08006 * 120.02874 * 0.02562 * 10 9 8 35 35 H 1.08001 * 119.86829 * 180.27479 * 11 10 9 36 36 H 1.07997 * 119.83211 * 179.76952 * 12 11 10 37 37 H 1.08005 * 119.96854 * 180.02562 * 13 12 11 38 38 H 0.97004 * 120.00209 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.02962 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2005 0.0000 4 6 3.5776 1.2119 -0.0005 5 6 4.3197 2.5235 -0.0011 6 6 4.2824 0.0166 -0.0068 7 7 5.6772 0.0259 -0.0135 8 6 3.5873 -1.1990 -0.0006 9 6 4.3301 -2.4815 -0.0007 10 6 4.2354 -3.3452 -1.0898 11 6 4.9331 -4.5360 -1.0873 12 6 5.7193 -4.8819 -0.0014 13 6 5.8168 -4.0367 1.0867 14 6 5.1258 -2.8336 1.0961 15 8 5.2200 -2.0023 2.1642 16 6 5.9071 -2.4540 3.2325 17 1 6.4211 -3.4025 3.1823 18 6 5.9538 -1.7008 4.3955 19 7 5.3281 -0.5452 4.4564 20 14 6.9065 -2.3263 5.8756 21 1 8.3337 -2.5050 5.5062 22 1 6.8017 -1.3429 6.9834 23 1 6.3419 -3.6280 6.3137 24 6 2.1941 -1.1969 0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 1.6512 2.1328 -0.0004 29 1 4.4991 2.8399 1.0264 30 1 3.7239 3.2779 -0.5149 31 1 5.2730 2.4014 -0.5153 32 1 6.1565 0.8693 -0.0143 33 1 6.1677 -0.8109 -0.0183 34 1 3.6201 -3.0811 -1.9372 35 1 4.8624 -5.2026 -1.9341 36 1 6.2593 -5.8172 -0.0053 37 1 6.4321 -4.3122 1.9305 38 1 5.3611 -0.0180 5.2701 39 1 1.6522 -2.1311 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244606780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:57 Heat of formation + Delta-G solvation = 10.423961 kcal Electronic energy + Delta-G solvation = -22073.009420 eV Core-core repulsion = 18945.384485 eV Total energy + Delta-G solvation = -3127.624935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.60351 -38.37819 -36.29467 -34.54472 -32.70217 -32.21785 -30.73360 -29.17499 -28.44551 -26.60176 -25.31984 -25.02743 -22.72148 -21.38327 -20.06389 -19.70134 -17.92642 -16.92419 -16.55722 -16.24348 -15.06649 -14.56467 -14.45668 -13.81081 -13.76179 -13.51903 -13.49052 -13.37703 -12.97599 -12.78745 -12.62182 -12.42728 -12.09153 -11.70612 -11.66897 -11.43854 -11.26080 -11.14688 -10.86317 -10.72787 -10.60238 -10.44894 -10.24719 -9.65301 -9.32171 -8.84320 -8.28505 -7.81572 -7.19977 -6.55686 -6.43389 -4.02305 1.87595 2.24172 2.35955 2.40752 3.11296 3.13226 3.15263 3.95314 4.39076 4.57316 4.69354 5.07287 5.27338 5.32272 5.40601 5.49296 5.67375 5.73060 5.77774 5.81453 5.94499 5.97762 6.04787 6.08348 6.17104 6.21568 6.25566 6.32725 6.61111 6.71575 6.74225 6.80663 7.00826 7.07590 7.12804 7.25126 7.34654 7.37608 7.42019 7.61079 7.82131 7.98540 8.24622 8.49137 9.00667 9.71770 10.72486 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.007109 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.717710 B = 3937.854931 C = 5123.114762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.157 4.157 3 C -0.077 4.077 4 C -0.171 4.171 5 C -0.098 4.098 6 C 0.250 3.750 7 N -0.859 5.859 8 C -0.085 4.085 9 C -0.123 4.123 10 C -0.062 4.062 11 C -0.217 4.217 12 C -0.073 4.073 13 C -0.238 4.238 14 C 0.157 3.843 15 O -0.156 6.156 16 C -0.397 4.397 17 H 0.089 0.911 18 C 0.044 3.956 19 N -0.851 5.851 20 Si 0.936 3.064 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.066 4.066 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.390 0.610 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 1.043 -8.561 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.159 4.159 3 C -0.096 4.096 4 C -0.175 4.175 5 C -0.155 4.155 6 C 0.143 3.857 7 N -0.396 5.396 8 C -0.090 4.090 9 C -0.124 4.124 10 C -0.080 4.080 11 C -0.235 4.235 12 C -0.091 4.091 13 C -0.258 4.258 14 C 0.102 3.898 15 O -0.059 6.059 16 C -0.473 4.473 17 H 0.106 0.894 18 C -0.162 4.162 19 N -0.485 5.485 20 Si 0.761 3.239 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.084 4.084 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.219 0.781 33 H 0.228 0.772 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.679 1.488 -8.318 8.864 hybrid contribution 0.959 -0.545 0.985 1.479 sum -1.720 0.943 -7.333 7.590 Atomic orbital electron populations 1.20567 0.92203 1.01761 1.00888 1.19361 0.95159 0.92966 1.08428 1.20462 0.92645 0.96768 0.99718 1.19112 0.93744 0.93251 1.11438 1.20502 0.99045 0.94230 1.01689 1.17476 0.83997 0.92284 0.91910 1.42399 1.03327 1.10528 1.83384 1.17958 0.92406 0.90386 1.08246 1.17731 1.03462 0.96263 0.94967 1.20744 0.97859 0.93313 0.96110 1.20517 1.04578 0.98735 0.99720 1.20790 0.97194 0.97881 0.93239 1.21120 1.06940 0.96818 1.00907 1.19431 0.92376 0.89344 0.88626 1.84039 1.64324 1.37396 1.20093 1.21264 1.29928 1.06370 0.89739 0.89357 1.25231 0.97409 0.95563 0.97975 1.70060 1.39261 1.11098 1.28042 0.85862 0.79486 0.78614 0.79940 1.19625 1.20335 1.19572 1.20724 0.92453 0.96891 0.98366 0.92579 0.92406 0.92552 0.87204 0.91813 0.92345 0.92772 0.78146 0.77239 0.87058 0.87669 0.87652 0.85585 0.92116 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.00 36.01 0.36 -0.98 16 2 C -0.16 -2.75 5.88 -104.64 -0.61 -3.36 16 3 C -0.08 -1.34 9.33 -39.55 -0.37 -1.71 16 4 C -0.17 -3.13 5.89 -104.47 -0.62 -3.75 16 5 C -0.10 -1.46 9.58 36.00 0.34 -1.12 16 6 C 0.25 5.07 6.46 -83.51 -0.54 4.53 16 7 N -0.86 -16.27 8.59 32.56 0.28 -15.99 16 8 C -0.09 -1.79 4.95 -104.72 -0.52 -2.31 16 9 C -0.12 -2.60 4.53 -104.73 -0.47 -3.07 16 10 C -0.06 -1.14 9.73 -39.26 -0.38 -1.52 16 11 C -0.22 -3.77 10.03 -39.59 -0.40 -4.16 16 12 C -0.07 -1.33 10.03 -39.54 -0.40 -1.73 16 13 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 14 C 0.16 3.70 5.55 -38.74 -0.21 3.48 16 15 O -0.16 -4.26 8.65 0.34 0.00 -4.25 16 16 C -0.40 -10.82 9.49 30.88 0.29 -10.52 16 17 H 0.09 2.25 5.21 -52.49 -0.27 1.97 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 19 N -0.85 -24.55 13.67 55.48 0.76 -23.79 16 20 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.07 -1.27 9.37 -39.26 -0.37 -1.63 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.05 0.73 6.53 -51.93 -0.34 0.39 16 32 H 0.39 6.42 6.81 -40.82 -0.28 6.14 16 33 H 0.40 7.92 6.82 -40.82 -0.28 7.65 16 34 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -30.29 327.39 -8.22 -38.51 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -4.82 Total: 17.46 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -4.35 Total: -32.24 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 1.04 Total: -39.78 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: 0.00 Total: -4.25 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.29 -8.22 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244606780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.932 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds