Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47362 * 2 1 4 4 C 1.37958 * 119.92752 * 265.02671 * 3 2 1 5 5 C 1.39583 * 119.84762 * 179.97438 * 4 3 2 6 6 C 1.47968 * 120.14334 * 179.97438 * 5 4 3 7 7 C 1.39891 * 119.45396 * 179.72877 * 6 5 4 8 8 C 1.36604 * 119.46958 * 179.76114 * 7 6 5 9 9 C 1.41307 * 118.41373 * 0.50179 * 8 7 6 10 10 C 1.41051 * 120.55618 * 179.76529 * 9 8 7 11 11 H 1.07992 * 119.99893 * 155.65212 * 10 9 8 12 12 C 1.40026 * 119.99785 * 335.64806 * 10 9 8 13 13 N 1.30787 * 120.00360 * 343.27968 * 12 10 9 14 14 Si 1.86805 * 119.99752 * 163.27919 * 12 10 9 15 15 H 1.48491 * 109.47124 * 60.00031 * 14 12 10 16 16 H 1.48502 * 109.47088 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46987 * 299.99988 * 14 12 10 18 18 C 1.40957 * 118.88710 * 359.74237 * 9 8 7 19 19 N 1.31254 * 120.40526 * 0.02562 * 18 9 8 20 20 C 1.39630 * 119.71355 * 359.97438 * 5 4 3 21 21 C 1.37910 * 119.85337 * 359.72417 * 20 5 4 22 22 C 1.38370 * 119.92224 * 85.00084 * 3 2 1 23 23 C 1.50694 * 119.85782 * 0.02562 * 22 3 2 24 24 O 1.42899 * 109.47280 * 180.02562 * 23 22 3 25 25 H 1.09004 * 109.47091 * 59.99233 * 1 2 3 26 26 H 1.08997 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46706 * 299.99919 * 1 2 3 28 28 H 1.09002 * 109.47202 * 240.00236 * 2 1 3 29 29 H 1.08999 * 109.47395 * 120.00092 * 2 1 3 30 30 H 1.07994 * 120.07151 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.26445 * 0.02562 * 7 6 5 32 32 H 1.07999 * 120.79778 * 180.21757 * 8 7 6 33 33 H 0.96996 * 120.00062 * 179.97438 * 13 12 10 34 34 H 1.07995 * 119.79286 * 179.97438 * 18 9 8 35 35 H 1.08008 * 120.07012 * 179.97438 * 20 5 4 36 36 H 1.07997 * 119.92967 * 180.29128 * 21 20 5 37 37 H 1.09004 * 109.46916 * 59.99901 * 23 22 3 38 38 H 1.09002 * 109.47031 * 300.00396 * 23 22 3 39 39 H 0.96703 * 114.00152 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3596 2.0352 -1.1911 5 6 2.8242 3.3514 -1.1892 6 6 3.1776 4.0165 -2.4629 7 6 3.6364 5.3379 -2.4448 8 6 3.9674 5.9506 -3.6200 9 6 3.8220 5.2223 -4.8222 10 6 4.1457 5.8125 -6.0617 11 1 4.4145 5.1901 -6.9023 12 6 4.1184 7.2054 -6.2023 13 7 3.4929 7.9398 -5.3191 14 14 4.9755 8.0148 -7.6514 15 1 4.3844 7.5147 -8.9184 16 1 4.8008 9.4873 -7.5704 17 1 6.4233 7.6860 -7.6168 18 6 3.3484 3.8961 -4.7618 19 7 3.0480 3.3498 -3.6068 20 6 2.9542 4.0378 0.0198 21 6 2.6177 3.4141 1.2029 22 6 2.1640 2.1065 1.1947 23 6 1.8047 1.4290 2.4919 24 8 2.0227 2.3324 3.5775 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2564 1.4990 -2.1228 31 1 3.7323 5.8680 -1.5087 32 1 4.3271 6.9689 -3.6306 33 1 3.4743 8.9047 -5.4164 34 1 3.2313 3.3262 -5.6717 35 1 3.3136 5.0563 0.0280 36 1 2.7133 3.9453 2.1382 37 1 2.4274 0.5442 2.6244 38 1 0.7554 1.1347 2.4697 39 1 1.8120 1.9622 4.4456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244624296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = -20.432364 kcal Electronic energy + Delta-G solvation = -20854.060470 eV Core-core repulsion = 17725.097504 eV Total energy + Delta-G solvation = -3128.962966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.45244 -38.21148 -36.50406 -34.52201 -33.84237 -31.56590 -30.77692 -29.64985 -28.98489 -26.63584 -24.62575 -23.71293 -22.02903 -21.67648 -20.76948 -19.47314 -17.51959 -17.38280 -16.28040 -15.55700 -15.16330 -14.94947 -14.91278 -14.43556 -14.02680 -13.71115 -13.23703 -13.16957 -13.03573 -12.84474 -12.48261 -12.23335 -11.84040 -11.67475 -11.60096 -11.48547 -11.28018 -11.20446 -11.05073 -10.76128 -10.44931 -10.25504 -10.21357 -9.91791 -9.52624 -8.52659 -8.35565 -8.22287 -8.09818 -7.26399 -6.98908 -4.57905 1.54717 1.97469 2.66459 2.91876 2.94022 2.96134 3.14854 3.71979 4.19100 4.23215 4.62752 4.97529 5.04031 5.23782 5.28890 5.36987 5.43693 5.52936 5.62448 5.64739 5.71672 5.87005 5.95805 6.03055 6.10282 6.24604 6.29064 6.49116 6.54814 6.63390 6.73485 6.80729 6.87264 6.97588 7.07706 7.15883 7.33015 7.51235 7.58959 7.70407 7.76580 7.87167 8.29381 8.48847 8.59170 9.53702 9.86304 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033636 B = 0.003381 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.249670 B = 8279.524468 C = 8921.183955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.079 4.079 4 C -0.110 4.110 5 C 0.025 3.975 6 C -0.009 4.009 7 C -0.120 4.120 8 C -0.145 4.145 9 C 0.069 3.931 10 C -0.434 4.434 11 H 0.087 0.913 12 C 0.072 3.928 13 N -0.776 5.776 14 Si 0.917 3.083 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.017 4.017 19 N -0.447 5.447 20 C -0.141 4.141 21 C -0.090 4.090 22 C -0.127 4.127 23 C 0.126 3.874 24 O -0.569 6.569 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.288 0.712 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -7.971 10.218 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.080 4.080 4 C -0.129 4.129 5 C 0.024 3.976 6 C -0.143 4.143 7 C -0.141 4.141 8 C -0.170 4.170 9 C 0.065 3.935 10 C -0.463 4.463 11 H 0.105 0.895 12 C -0.149 4.149 13 N -0.400 5.400 14 Si 0.740 3.260 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.183 4.183 19 N -0.155 5.155 20 C -0.160 4.160 21 C -0.108 4.108 22 C -0.127 4.127 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.120 0.880 32 H 0.145 0.855 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.756 -8.157 9.816 13.057 hybrid contribution 0.455 1.134 -0.285 1.255 sum -2.301 -7.023 9.531 12.060 Atomic orbital electron populations 1.21745 0.95089 1.01177 1.02354 1.20508 0.95950 0.93266 1.02376 1.19431 1.00409 0.95678 0.92440 1.21045 1.00090 0.94747 0.97015 1.18709 0.94423 0.92853 0.91605 1.18800 1.12760 0.92313 0.90397 1.21325 0.99975 0.94773 0.97991 1.21339 1.03606 1.00975 0.91054 1.18618 0.88534 0.92527 0.93855 1.19658 1.37912 0.91562 0.97158 0.89515 1.26095 0.93068 0.97755 0.97986 1.69769 1.28847 1.07895 1.33451 0.86206 0.80801 0.78017 0.80936 1.18597 1.20039 1.18481 1.22452 1.06883 0.95070 0.93863 1.66911 1.12746 1.37575 0.98234 1.21208 1.02936 1.00161 0.91709 1.20700 0.98226 0.94163 0.97668 1.19309 1.05321 0.95446 0.92629 1.20850 0.98652 0.90748 0.84890 1.86488 1.90719 1.42914 1.17316 0.92223 0.92754 0.92849 0.91012 0.91670 0.85340 0.88024 0.85525 0.90113 0.85334 0.86238 0.85862 0.93077 0.92929 0.77762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.88 37.16 0.37 -1.25 16 2 C -0.08 -1.03 5.56 -27.88 -0.15 -1.19 16 3 C -0.08 -1.27 5.13 -104.67 -0.54 -1.81 16 4 C -0.11 -2.11 9.20 -39.18 -0.36 -2.47 16 5 C 0.02 0.53 5.88 -104.89 -0.62 -0.09 16 6 C -0.01 -0.22 6.74 -82.74 -0.56 -0.77 16 7 C -0.12 -2.86 9.38 -39.55 -0.37 -3.23 16 8 C -0.14 -3.68 8.74 -39.01 -0.34 -4.02 16 9 C 0.07 1.79 5.59 -106.64 -0.60 1.20 16 10 C -0.43 -10.78 9.07 -37.85 -0.34 -11.12 16 11 H 0.09 2.02 7.90 -52.49 -0.41 1.60 16 12 C 0.07 1.68 5.19 -17.33 -0.09 1.59 16 13 N -0.78 -18.83 10.91 55.55 0.61 -18.22 16 14 Si 0.92 17.31 29.59 -169.99 -5.03 12.28 16 15 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 16 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 17 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 18 C -0.02 -0.43 10.97 -16.77 -0.18 -0.61 16 19 N -0.45 -11.06 9.39 -9.10 -0.09 -11.15 16 20 C -0.14 -2.66 9.42 -39.18 -0.37 -3.03 16 21 C -0.09 -1.53 9.36 -39.64 -0.37 -1.90 16 22 C -0.13 -1.99 5.89 -104.51 -0.62 -2.60 16 23 C 0.13 1.49 6.21 36.00 0.22 1.71 16 24 O -0.57 -6.53 12.12 -35.23 -0.43 -6.96 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.57 6.77 -51.93 -0.35 0.22 16 28 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 29 H 0.06 0.68 6.82 -51.93 -0.35 0.33 16 30 H 0.13 2.51 7.52 -52.49 -0.39 2.11 16 31 H 0.10 2.14 6.15 -52.49 -0.32 1.82 16 32 H 0.13 3.23 6.20 -52.49 -0.33 2.91 16 33 H 0.29 6.30 8.29 -40.82 -0.34 5.97 16 34 H 0.13 2.92 8.06 -52.49 -0.42 2.49 16 35 H 0.12 2.13 6.15 -52.48 -0.32 1.81 16 36 H 0.12 1.96 6.99 -52.49 -0.37 1.60 16 37 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 38 H 0.05 0.55 6.74 -51.93 -0.35 0.20 16 39 H 0.38 2.29 9.12 45.56 0.42 2.70 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -28.72 324.06 -8.97 -37.68 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.00 Total: 11.08 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -4.92 Total: -29.60 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.52 Total: -29.38 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.43 Total: -6.96 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.72 -8.97 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244624296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.250 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds