Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47047 * 2 1 4 4 C 1.38037 * 119.93964 * 265.01790 * 3 2 1 5 5 C 1.39303 * 119.87875 * 179.97438 * 4 3 2 6 6 C 1.48416 * 120.11923 * 180.02562 * 5 4 3 7 7 C 1.39709 * 120.41229 * 359.72574 * 6 5 4 8 8 N 1.31906 * 121.15216 * 179.77046 * 7 6 5 9 9 C 1.31529 * 122.12224 * 0.48961 * 8 7 6 10 10 C 1.40770 * 120.66253 * 359.77795 * 9 8 7 11 11 C 1.41431 * 120.60331 * 179.97438 * 10 9 8 12 12 H 1.08007 * 120.00109 * 335.73653 * 11 10 9 13 13 C 1.39939 * 120.00306 * 155.73953 * 11 10 9 14 14 N 1.30831 * 119.99445 * 343.64014 * 13 11 10 15 15 Si 1.86796 * 120.00264 * 163.63998 * 13 11 10 16 16 H 1.48502 * 109.47175 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47062 * 119.99997 * 15 13 11 18 18 H 1.48496 * 109.47116 * 240.00080 * 15 13 11 19 19 C 1.39135 * 120.40992 * 179.97438 * 6 5 4 20 20 C 1.39347 * 119.76249 * 0.02562 * 5 4 3 21 21 C 1.37998 * 119.87455 * 359.70210 * 20 5 4 22 22 C 1.38299 * 119.94022 * 84.99957 * 3 2 1 23 23 C 1.50700 * 119.87890 * 359.97438 * 22 3 2 24 24 O 1.42902 * 109.46960 * 180.02562 * 23 22 3 25 25 H 1.09006 * 109.47308 * 299.99990 * 1 2 3 26 26 H 1.08999 * 109.47204 * 60.00439 * 1 2 3 27 27 H 1.09002 * 109.47030 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47394 * 239.99713 * 2 1 3 29 29 H 1.08999 * 109.47204 * 119.99560 * 2 1 3 30 30 H 1.08003 * 120.06143 * 0.02926 * 4 3 2 31 31 H 1.08004 * 119.42136 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.66750 * 179.74854 * 9 8 7 33 33 H 0.96998 * 119.99764 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.95640 * 0.02562 * 19 6 5 35 35 H 1.07997 * 120.05968 * 179.97438 * 20 5 4 36 36 H 1.08003 * 119.93665 * 180.31307 * 21 20 5 37 37 H 1.09004 * 109.46970 * 60.00182 * 23 22 3 38 38 H 1.09004 * 109.47405 * 300.00276 * 23 22 3 39 39 H 0.96700 * 114.00090 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3599 2.0358 -1.1916 5 6 2.8236 3.3494 -1.1902 6 6 3.1768 4.0159 -2.4684 7 6 3.0532 3.3320 -3.6804 8 7 3.3587 3.9116 -4.8252 9 6 3.8007 5.1488 -4.8866 10 6 3.9619 5.9126 -3.7152 11 6 4.4378 7.2427 -3.7826 12 1 5.0369 7.5599 -4.6235 13 6 4.1327 8.1478 -2.7599 14 7 3.1660 7.8830 -1.9190 15 14 5.1054 9.7340 -2.5953 16 1 6.1364 9.7954 -3.6624 17 1 4.1873 10.8937 -2.7274 18 1 5.7655 9.7742 -1.2658 19 6 3.6400 5.3278 -2.4741 20 6 2.9546 4.0353 0.0156 21 6 2.6189 3.4128 1.2006 22 6 2.1639 2.1065 1.1939 23 6 1.8037 1.4302 2.4916 24 8 2.0222 2.3343 3.5765 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2560 1.4997 -2.1235 31 1 2.6982 2.3119 -3.6802 32 1 4.0428 5.5830 -5.8454 33 1 2.9547 8.5101 -1.2099 34 1 3.7507 5.8818 -1.5536 35 1 3.3140 5.0537 0.0223 36 1 2.7153 3.9453 2.1353 37 1 2.4258 0.5451 2.6249 38 1 0.7542 1.1367 2.4694 39 1 1.8110 1.9650 4.4448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244640593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = -19.964496 kcal Electronic energy + Delta-G solvation = -21195.196726 eV Core-core repulsion = 18066.254049 eV Total energy + Delta-G solvation = -3128.942678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.60388 -38.19440 -36.57322 -34.32037 -34.10304 -32.08252 -30.49281 -29.37075 -29.05178 -25.73958 -25.54223 -23.73066 -22.06675 -21.92457 -20.76478 -19.34758 -17.57208 -17.21763 -16.27034 -15.42450 -15.31653 -15.07662 -14.96091 -14.62980 -14.19859 -13.67884 -13.32981 -13.23246 -13.01499 -12.83061 -12.51209 -12.29455 -11.78017 -11.70505 -11.60590 -11.46837 -11.24913 -11.19975 -11.06357 -10.67877 -10.60965 -10.30744 -10.28614 -9.82010 -9.42955 -8.97446 -8.33144 -8.14396 -7.88345 -7.18336 -6.86895 -4.54145 1.43207 1.84538 2.66201 2.96701 3.01202 3.06125 3.15194 3.82635 4.17221 4.21856 4.61556 4.87815 4.93968 5.15062 5.21963 5.29352 5.43680 5.44939 5.55187 5.62509 5.64677 5.78379 5.83072 5.97369 6.05186 6.12098 6.20104 6.34190 6.44255 6.56332 6.69770 6.80451 6.85605 6.94710 7.02330 7.15268 7.24090 7.45901 7.56009 7.66320 7.80715 7.89125 8.36963 8.62630 8.65518 9.57182 10.02205 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.004610 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.039554 B = 6072.664650 C = 7382.150449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.081 4.081 4 C -0.118 4.118 5 C -0.004 4.004 6 C -0.095 4.095 7 C -0.023 4.023 8 N -0.471 5.471 9 C -0.017 4.017 10 C 0.061 3.939 11 C -0.449 4.449 12 H 0.084 0.916 13 C 0.074 3.926 14 N -0.791 5.791 15 Si 0.912 3.088 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.270 1.270 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.092 4.092 22 C -0.113 4.113 23 C 0.124 3.876 24 O -0.568 6.568 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.284 0.716 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -9.944 9.907 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.081 4.081 4 C -0.135 4.135 5 C -0.005 4.005 6 C -0.097 4.097 7 C -0.181 4.181 8 N -0.178 5.178 9 C -0.178 4.178 10 C 0.056 3.944 11 C -0.479 4.479 12 H 0.102 0.898 13 C -0.145 4.145 14 N -0.416 5.416 15 Si 0.736 3.264 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.195 1.195 19 C -0.140 4.140 20 C -0.137 4.137 21 C -0.110 4.110 22 C -0.113 4.113 23 C 0.046 3.954 24 O -0.373 6.373 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.169 -9.919 8.838 13.658 hybrid contribution 0.223 0.974 1.371 1.696 sum -2.946 -8.945 10.209 13.890 Atomic orbital electron populations 1.21754 0.94977 1.01293 1.02434 1.20514 0.96030 0.93057 1.02522 1.19387 1.00614 0.95800 0.92340 1.21011 1.00781 0.94687 0.97067 1.18989 0.95644 0.92905 0.92947 1.19474 1.02795 0.95288 0.92131 1.21778 1.09615 0.99186 0.87528 1.66940 1.09644 1.12055 1.29120 1.22553 1.06786 0.91328 0.97120 1.18485 0.90311 0.94020 0.91548 1.19598 1.28406 0.94138 1.05780 0.89757 1.25975 0.93632 1.00528 0.94317 1.69788 1.22067 1.36372 1.13352 0.86188 0.80389 0.80368 0.79455 1.18201 1.19810 1.19548 1.21878 1.00996 0.92024 0.99094 1.21400 1.00205 1.00472 0.91574 1.20823 0.98050 0.94120 0.98018 1.19370 1.03862 0.95331 0.92764 1.20873 0.98799 0.90797 0.84892 1.86498 1.90675 1.42825 1.17341 0.92765 0.92212 0.92649 0.90979 0.91501 0.85831 0.86094 0.85559 0.90532 0.84860 0.85387 0.85590 0.92877 0.92727 0.77632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.88 37.16 0.37 -1.13 16 2 C -0.08 -0.94 5.56 -27.88 -0.15 -1.10 16 3 C -0.08 -1.22 5.13 -104.67 -0.54 -1.76 16 4 C -0.12 -2.06 9.07 -39.26 -0.36 -2.42 16 5 C 0.00 -0.08 5.88 -104.90 -0.62 -0.70 16 6 C -0.09 -2.23 5.88 -104.82 -0.62 -2.85 16 7 C -0.02 -0.54 10.60 -16.97 -0.18 -0.72 16 8 N -0.47 -11.76 10.32 -12.28 -0.13 -11.89 16 9 C -0.02 -0.43 10.96 -16.73 -0.18 -0.62 16 10 C 0.06 1.60 5.59 -106.71 -0.60 1.00 16 11 C -0.45 -11.50 9.09 -37.73 -0.34 -11.85 16 12 H 0.08 2.05 7.90 -52.48 -0.41 1.64 16 13 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 14 N -0.79 -19.71 10.89 55.55 0.61 -19.10 16 15 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 16 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 19 C -0.11 -2.93 8.16 -38.23 -0.31 -3.24 16 20 C -0.12 -2.33 9.43 -39.26 -0.37 -2.70 16 21 C -0.09 -1.60 9.36 -39.63 -0.37 -1.97 16 22 C -0.11 -1.73 5.88 -104.56 -0.62 -2.34 16 23 C 0.12 1.42 6.21 36.01 0.22 1.64 16 24 O -0.57 -6.49 12.13 -35.23 -0.43 -6.91 16 25 H 0.05 0.54 6.76 -51.93 -0.35 0.19 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 29 H 0.07 0.64 6.82 -51.93 -0.35 0.29 16 30 H 0.12 2.02 6.22 -52.48 -0.33 1.69 16 31 H 0.12 2.49 6.20 -52.48 -0.33 2.16 16 32 H 0.13 2.95 8.06 -52.49 -0.42 2.52 16 33 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 34 H 0.13 3.43 4.45 -52.49 -0.23 3.19 16 35 H 0.13 2.62 6.26 -52.49 -0.33 2.29 16 36 H 0.13 2.08 6.99 -52.48 -0.37 1.71 16 37 H 0.05 0.52 7.50 -51.93 -0.39 0.13 16 38 H 0.05 0.55 6.74 -51.93 -0.35 0.20 16 39 H 0.38 2.27 9.12 45.56 0.42 2.69 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -29.42 321.77 -8.73 -38.15 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.85 Total: 10.98 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -4.75 Total: -29.05 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.48 Total: -30.99 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.43 Total: -6.91 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.42 -8.73 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244640593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.182 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds