Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47158 * 2 1 4 4 C 1.37956 * 119.92543 * 265.01858 * 3 2 1 5 5 C 1.39600 * 119.85317 * 179.97438 * 4 3 2 6 6 C 1.47967 * 120.14380 * 180.02562 * 5 4 3 7 7 C 1.40269 * 120.34553 * 179.97438 * 6 5 4 8 8 C 1.36685 * 118.60199 * 179.97438 * 7 6 5 9 9 C 1.40872 * 119.25946 * 0.02562 * 8 7 6 10 10 C 1.40992 * 119.68341 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99799 * 359.97438 * 10 9 8 12 12 C 1.40104 * 119.99941 * 180.02562 * 10 9 8 13 13 N 1.30713 * 120.00259 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99933 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46957 * 89.99930 * 14 12 10 16 16 H 1.48501 * 109.46894 * 210.00353 * 14 12 10 17 17 H 1.48504 * 109.46943 * 329.99867 * 14 12 10 18 18 N 1.33776 * 120.63490 * 0.02562 * 9 8 7 19 19 C 1.31194 * 121.50869 * 359.72575 * 18 9 8 20 20 C 1.39635 * 119.70961 * 0.02562 * 5 4 3 21 21 C 1.37907 * 119.85261 * 359.70338 * 20 5 4 22 22 C 1.38370 * 119.93288 * 84.99740 * 3 2 1 23 23 C 1.50703 * 119.85006 * 359.97438 * 22 3 2 24 24 O 1.42898 * 109.47171 * 180.02562 * 23 22 3 25 25 H 1.09001 * 109.47423 * 60.00297 * 1 2 3 26 26 H 1.09003 * 109.47625 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47595 * 300.00378 * 1 2 3 28 28 H 1.08998 * 109.47144 * 239.99336 * 2 1 3 29 29 H 1.09002 * 109.46597 * 119.99299 * 2 1 3 30 30 H 1.08004 * 120.07482 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.69602 * 359.95800 * 7 6 5 32 32 H 1.08005 * 120.36901 * 179.97438 * 8 7 6 33 33 H 0.96994 * 120.00421 * 179.97438 * 13 12 10 34 34 H 1.07998 * 119.65726 * 180.29189 * 19 18 9 35 35 H 1.08002 * 120.07489 * 179.97438 * 20 5 4 36 36 H 1.08000 * 119.93045 * 180.31394 * 21 20 5 37 37 H 1.09002 * 109.47152 * 60.00008 * 23 22 3 38 38 H 1.09001 * 109.46980 * 300.00109 * 23 22 3 39 39 H 0.96701 * 113.99881 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3596 2.0350 -1.1911 5 6 2.8243 3.3514 -1.1894 6 6 3.1767 4.0167 -2.4633 7 6 3.6435 5.3394 -2.4665 8 6 3.9591 5.9190 -3.6635 9 6 3.8064 5.1752 -4.8501 10 6 4.1298 5.7641 -6.0897 11 1 4.4923 6.7808 -6.1263 12 6 3.9800 5.0306 -7.2739 13 7 3.5409 3.8003 -7.2297 14 14 4.4079 5.8110 -8.9164 15 1 5.8362 5.5529 -9.2299 16 1 3.5536 5.2249 -9.9803 17 1 4.1737 7.2757 -8.8443 18 7 3.3575 3.9156 -4.8121 19 6 3.0511 3.3308 -3.6784 20 6 2.9551 4.0376 0.0197 21 6 2.6192 3.4137 1.2028 22 6 2.1639 2.1066 1.1946 23 6 1.8035 1.4296 2.4918 24 8 2.0216 2.3330 3.5773 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 2.2566 1.4987 -2.1229 31 1 3.7510 5.8883 -1.5427 32 1 4.3207 6.9361 -3.6992 33 1 3.4368 3.2926 -8.0495 34 1 2.6958 2.3109 -3.6821 35 1 3.3144 5.0560 0.0279 36 1 2.7150 3.9450 2.1382 37 1 2.4255 0.5444 2.6248 38 1 0.7539 1.1361 2.4691 39 1 1.8102 1.9631 4.4454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244640663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -10.990645 kcal Electronic energy + Delta-G solvation = -20892.991901 eV Core-core repulsion = 17764.438359 eV Total energy + Delta-G solvation = -3128.553542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.45668 -38.11893 -36.52315 -34.41522 -33.59145 -31.73397 -30.78976 -29.40324 -29.04001 -26.63464 -24.54496 -23.79296 -22.13637 -21.68617 -20.67882 -19.36369 -17.69788 -17.32185 -16.24464 -15.56334 -15.10872 -14.94894 -14.81727 -14.38453 -14.05585 -13.70825 -13.26154 -13.13617 -12.82705 -12.74029 -12.44407 -12.28954 -12.15660 -11.59915 -11.56452 -11.24990 -11.14732 -11.10478 -11.01189 -10.70116 -10.46024 -10.25480 -10.18732 -9.95656 -9.57871 -8.69561 -8.28792 -8.20670 -7.68183 -7.14241 -6.58380 -4.63065 1.57734 1.94326 2.74762 2.99244 3.01581 3.02962 3.15227 3.80381 4.22978 4.28602 4.71839 4.95918 5.02349 5.24465 5.28253 5.36074 5.51437 5.53085 5.68140 5.70812 5.82525 5.85382 5.88767 5.97478 6.04645 6.18274 6.23040 6.26565 6.52952 6.58175 6.70557 6.72703 6.91393 6.96452 7.06385 7.10300 7.28434 7.46344 7.58231 7.64081 7.76866 7.90371 8.06125 8.45961 8.75595 9.95619 10.11590 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031903 B = 0.003475 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.450296 B = 8054.489375 C = 8836.076766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.067 4.067 4 C -0.144 4.144 5 C 0.038 3.962 6 C -0.278 4.278 7 C -0.035 4.035 8 C -0.272 4.272 9 C 0.252 3.748 10 C -0.408 4.408 11 H 0.088 0.912 12 C 0.063 3.937 13 N -0.700 5.700 14 Si 0.912 3.088 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.259 1.259 18 N -0.489 5.489 19 C 0.157 3.843 20 C -0.156 4.156 21 C -0.082 4.082 22 C -0.140 4.140 23 C 0.127 3.873 24 O -0.570 6.570 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.277 0.723 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -5.899 11.872 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.067 4.067 4 C -0.162 4.162 5 C 0.037 3.963 6 C -0.283 4.283 7 C -0.058 4.058 8 C -0.295 4.295 9 C 0.129 3.871 10 C -0.437 4.437 11 H 0.106 0.894 12 C -0.164 4.164 13 N -0.319 5.319 14 Si 0.735 3.265 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.183 1.183 18 N -0.200 5.200 19 C -0.012 4.012 20 C -0.174 4.174 21 C -0.100 4.100 22 C -0.140 4.140 23 C 0.050 3.950 24 O -0.375 6.375 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.587 -6.079 10.370 12.544 hybrid contribution 0.120 0.435 0.564 0.722 sum -3.467 -5.644 10.933 12.783 Atomic orbital electron populations 1.21742 0.95043 1.01218 1.02358 1.20526 0.95987 0.93335 1.02421 1.19352 0.99503 0.95423 0.92411 1.20960 1.03333 0.95079 0.96869 1.18875 0.92462 0.92343 0.92619 1.19065 1.19947 0.96736 0.92564 1.20673 0.94921 0.93600 0.96623 1.21436 1.13548 1.00819 0.93658 1.18672 0.88156 0.88174 0.92124 1.19798 1.34335 0.99659 0.89940 0.89403 1.26203 0.93973 0.94728 1.01545 1.70118 1.24711 1.07636 1.29454 0.86245 0.79388 0.80546 0.80277 1.19158 1.19871 1.18323 1.68801 1.15831 1.10393 1.25011 1.22772 0.92635 0.97788 0.88003 1.21162 1.04174 1.00151 0.91909 1.20717 0.97468 0.94098 0.97674 1.19234 1.06613 0.95580 0.92565 1.20832 0.98541 0.90713 0.84913 1.86485 1.90690 1.42976 1.17329 0.92218 0.92733 0.92836 0.91019 0.91628 0.86191 0.88283 0.88131 0.91157 0.86030 0.86642 0.86121 0.93209 0.93061 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.88 37.16 0.37 -1.20 16 2 C -0.09 -1.02 5.56 -27.89 -0.15 -1.18 16 3 C -0.07 -1.04 5.13 -104.68 -0.54 -1.57 16 4 C -0.14 -2.59 9.07 -39.18 -0.36 -2.94 16 5 C 0.04 0.76 5.88 -104.88 -0.62 0.15 16 6 C -0.28 -6.32 5.92 -104.45 -0.62 -6.93 16 7 C -0.04 -0.79 9.46 -39.38 -0.37 -1.17 16 8 C -0.27 -6.60 9.76 -39.15 -0.38 -6.99 16 9 C 0.25 6.76 6.55 -84.98 -0.56 6.20 16 10 C -0.41 -10.55 9.12 -37.84 -0.35 -10.90 16 11 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 12 C 0.06 1.54 5.50 -17.33 -0.10 1.44 16 13 N -0.70 -17.99 11.44 55.55 0.64 -17.35 16 14 Si 0.91 17.78 29.56 -169.99 -5.02 12.75 16 15 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 18 N -0.49 -13.29 7.83 -10.84 -0.08 -13.38 16 19 C 0.16 3.81 10.60 -17.13 -0.18 3.63 16 20 C -0.16 -2.87 9.44 -39.18 -0.37 -3.24 16 21 C -0.08 -1.37 9.36 -39.64 -0.37 -1.75 16 22 C -0.14 -2.16 5.89 -104.50 -0.62 -2.78 16 23 C 0.13 1.50 6.21 36.01 0.22 1.72 16 24 O -0.57 -6.53 12.12 -35.23 -0.43 -6.95 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.56 6.76 -51.93 -0.35 0.21 16 28 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 29 H 0.07 0.68 6.82 -51.93 -0.35 0.32 16 30 H 0.12 2.07 6.22 -52.48 -0.33 1.74 16 31 H 0.10 1.96 6.30 -52.49 -0.33 1.63 16 32 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 34 H 0.12 2.65 6.21 -52.49 -0.33 2.33 16 35 H 0.12 2.02 6.25 -52.49 -0.33 1.69 16 36 H 0.12 1.92 6.99 -52.49 -0.37 1.55 16 37 H 0.05 0.52 7.49 -51.93 -0.39 0.13 16 38 H 0.05 0.53 6.74 -51.93 -0.35 0.18 16 39 H 0.38 2.28 9.12 45.56 0.42 2.70 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -29.95 323.04 -8.95 -38.90 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -3.94 Total: 8.67 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -4.98 Total: -27.50 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.55 Total: -30.73 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.43 Total: -6.95 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.02 Total: 12.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.95 -8.95 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244640663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.907 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds