Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47050 * 2 1 4 4 C 1.37935 * 119.92784 * 265.27559 * 3 2 1 5 5 C 1.39663 * 119.84526 * 180.26593 * 4 3 2 6 6 C 1.47825 * 120.15227 * 179.74639 * 5 4 3 7 7 C 1.39673 * 120.64986 * 309.98442 * 6 5 4 8 8 C 1.38396 * 118.47615 * 179.97438 * 7 6 5 9 9 C 1.39064 * 119.72109 * 359.97438 * 8 7 6 10 10 N 1.31275 * 121.34043 * 0.02562 * 9 8 7 11 11 C 1.33706 * 121.63629 * 359.69877 * 10 9 8 12 12 C 1.40818 * 119.93563 * 180.28916 * 11 10 9 13 13 H 1.08001 * 119.99388 * 180.28623 * 12 11 10 14 14 C 1.40145 * 120.00442 * 0.29327 * 12 11 10 15 15 N 1.30701 * 120.00132 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00422 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46835 * 59.99752 * 16 14 12 18 18 H 1.48496 * 109.47444 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47041 * 300.00163 * 16 14 12 20 20 C 1.39707 * 119.69869 * 359.73000 * 5 4 3 21 21 C 1.37891 * 119.84523 * 359.97438 * 20 5 4 22 22 C 1.38387 * 119.92219 * 84.99825 * 3 2 1 23 23 C 1.50703 * 119.84540 * 0.02562 * 22 3 2 24 24 O 1.42898 * 109.47171 * 179.72960 * 23 22 3 25 25 H 1.08996 * 109.47152 * 299.99441 * 1 2 3 26 26 H 1.08998 * 109.47374 * 60.00182 * 1 2 3 27 27 H 1.09003 * 109.46578 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47386 * 240.00137 * 2 1 3 29 29 H 1.08998 * 109.47374 * 119.99818 * 2 1 3 30 30 H 1.08005 * 120.07546 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.76374 * 0.02562 * 7 6 5 32 32 H 1.07997 * 120.14138 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.32437 * 179.97438 * 9 8 7 34 34 H 0.96998 * 120.00045 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.07544 * 179.97438 * 20 5 4 36 36 H 1.07994 * 119.92350 * 179.97438 * 21 20 5 37 37 H 1.09002 * 109.47152 * 59.72744 * 23 22 3 38 38 H 1.09001 * 109.46980 * 299.72844 * 23 22 3 39 39 H 0.96701 * 113.99881 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3545 2.0368 -1.1914 5 6 2.8251 3.3518 -1.1889 6 6 3.1778 4.0166 -2.4612 7 6 4.0174 3.3885 -3.3840 8 6 4.3176 4.0517 -4.5610 9 6 3.7829 5.3136 -4.7971 10 7 2.9946 5.8955 -3.9234 11 6 2.6649 5.3017 -2.7717 12 6 1.8114 5.9563 -1.8628 13 1 1.5482 5.4796 -0.9301 14 6 1.3035 7.2262 -2.1685 15 7 1.6224 7.8033 -3.2970 16 14 0.1708 8.0942 -0.9631 17 1 0.8791 8.2921 0.3270 18 1 -0.2246 9.4138 -1.5177 19 1 -1.0420 7.2670 -0.7401 20 6 2.9608 4.0361 0.0215 21 6 2.6292 3.4102 1.2046 22 6 2.1638 2.1065 1.1948 23 6 1.8044 1.4288 2.4920 24 8 2.0287 2.3297 3.5783 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2475 1.5019 -2.1235 31 1 4.4224 2.4075 -3.1839 32 1 4.9637 3.5909 -5.2935 33 1 4.0217 5.8255 -5.7176 34 1 1.2711 8.6824 -3.5084 35 1 3.3246 5.0530 0.0305 36 1 2.7340 3.9379 2.1410 37 1 2.4238 0.5413 2.6221 38 1 0.7538 1.1388 2.4715 39 1 1.8183 1.9592 4.4464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244646285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -8.129876 kcal Electronic energy + Delta-G solvation = -21617.488332 eV Core-core repulsion = 18489.058842 eV Total energy + Delta-G solvation = -3128.429490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.37220 -38.01361 -36.40970 -34.11265 -33.68278 -31.88657 -30.33864 -29.37978 -28.85688 -26.15175 -25.09422 -23.52599 -21.98119 -21.33900 -20.89078 -19.25584 -17.54078 -17.30882 -15.86781 -15.59889 -14.99444 -14.83922 -14.68680 -14.37846 -14.10223 -13.65696 -13.37122 -13.17270 -12.78943 -12.58130 -12.24944 -12.14209 -11.77584 -11.60080 -11.44280 -11.19678 -11.16158 -11.10957 -10.95580 -10.57664 -10.34889 -10.19429 -10.12240 -9.75969 -9.42440 -8.48400 -8.10521 -7.94055 -7.62314 -7.22875 -6.47833 -4.55743 1.82199 2.08195 2.74855 3.01574 3.05554 3.09295 3.20957 3.90595 4.31129 4.41526 4.69723 5.03228 5.08787 5.31825 5.37605 5.41536 5.58746 5.65030 5.75827 5.82530 5.88767 5.92593 6.01316 6.07708 6.19578 6.26980 6.31660 6.38632 6.51347 6.70560 6.73727 6.85867 6.98842 7.11041 7.15362 7.29674 7.38097 7.55227 7.66783 7.72299 7.78972 8.00671 8.20695 8.58015 8.87494 10.03839 10.22533 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.006224 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.145061 B = 4497.953770 C = 5766.267571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.082 4.082 4 C -0.127 4.127 5 C 0.032 3.968 6 C -0.238 4.238 7 C -0.033 4.033 8 C -0.322 4.322 9 C 0.132 3.868 10 N -0.483 5.483 11 C 0.268 3.732 12 C -0.419 4.419 13 H 0.094 0.906 14 C 0.068 3.932 15 N -0.708 5.708 16 Si 0.904 3.096 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.115 4.115 21 C -0.096 4.096 22 C -0.124 4.124 23 C 0.126 3.874 24 O -0.568 6.568 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.275 0.725 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -10.334 8.326 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.146 4.146 5 C 0.031 3.969 6 C -0.243 4.243 7 C -0.057 4.057 8 C -0.345 4.345 9 C -0.037 4.037 10 N -0.194 5.194 11 C 0.145 3.855 12 C -0.449 4.449 13 H 0.112 0.888 14 C -0.158 4.158 15 N -0.329 5.329 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.133 4.133 21 C -0.114 4.114 22 C -0.124 4.124 23 C 0.049 3.951 24 O -0.373 6.373 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.700 -8.882 7.566 11.791 hybrid contribution -0.274 -0.824 0.908 1.257 sum -1.974 -9.706 8.475 13.035 Atomic orbital electron populations 1.21749 0.95128 1.01054 1.02488 1.20489 0.95949 0.93383 1.02137 1.19315 1.00949 0.95491 0.92470 1.21036 1.01844 0.95202 0.96487 1.18738 0.93459 0.91931 0.92751 1.19375 1.09952 0.98903 0.96030 1.20878 0.95076 0.96831 0.92922 1.21215 1.12715 1.00171 1.00449 1.22605 0.92330 0.91456 0.97265 1.68769 1.14429 1.33643 1.02550 1.18514 0.90094 0.87027 0.89879 1.19821 1.21824 0.99725 1.03528 0.88771 1.26154 0.96341 0.97753 0.95581 1.70110 1.30873 1.12422 1.19447 0.86425 0.80923 0.78700 0.81210 1.18585 1.20088 1.18728 1.21435 1.00281 1.00240 0.91353 1.20793 0.98493 0.94093 0.97988 1.19297 1.05081 0.95497 0.92498 1.20848 0.98549 0.90733 0.85001 1.86509 1.90529 1.43040 1.17200 0.92743 0.92235 0.92871 0.91316 0.91725 0.86795 0.88609 0.88735 0.86406 0.91373 0.85549 0.85962 0.93215 0.92996 0.77871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.88 37.15 0.37 -1.33 16 2 C -0.08 -1.03 5.56 -27.88 -0.15 -1.19 16 3 C -0.08 -1.35 5.13 -104.68 -0.54 -1.89 16 4 C -0.13 -2.43 9.18 -39.16 -0.36 -2.79 16 5 C 0.03 0.70 5.02 -104.89 -0.53 0.17 16 6 C -0.24 -5.79 5.53 -104.08 -0.58 -6.37 16 7 C -0.03 -0.74 9.67 -38.99 -0.38 -1.12 16 8 C -0.32 -7.22 10.10 -39.22 -0.40 -7.61 16 9 C 0.13 3.19 11.17 -17.48 -0.20 3.00 16 10 N -0.48 -13.25 7.85 -10.91 -0.09 -13.33 16 11 C 0.27 7.26 6.56 -84.71 -0.56 6.70 16 12 C -0.42 -11.09 7.97 -37.89 -0.30 -11.39 16 13 H 0.09 2.39 5.25 -52.49 -0.28 2.11 16 14 C 0.07 1.73 5.50 -17.32 -0.10 1.63 16 15 N -0.71 -18.67 11.46 55.56 0.64 -18.03 16 16 Si 0.90 18.76 29.56 -169.99 -5.03 13.73 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 20 C -0.12 -2.41 7.57 -39.16 -0.30 -2.71 16 21 C -0.10 -1.79 9.36 -39.64 -0.37 -2.16 16 22 C -0.12 -2.06 5.89 -104.49 -0.62 -2.67 16 23 C 0.13 1.60 6.21 36.01 0.22 1.82 16 24 O -0.57 -7.13 12.12 -35.23 -0.43 -7.56 16 25 H 0.05 0.62 6.77 -51.93 -0.35 0.27 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 29 H 0.06 0.70 6.81 -51.93 -0.35 0.35 16 30 H 0.11 2.07 8.05 -52.48 -0.42 1.65 16 31 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 34 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 35 H 0.13 2.76 7.26 -52.49 -0.38 2.37 16 36 H 0.12 2.18 6.99 -52.49 -0.37 1.81 16 37 H 0.05 0.55 7.48 -51.93 -0.39 0.16 16 38 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 39 H 0.38 2.65 9.12 45.56 0.42 3.07 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -30.31 323.90 -8.93 -39.24 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.14 Total: 8.97 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -4.77 Total: -27.89 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.55 Total: -31.37 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.43 Total: -7.56 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.31 -8.93 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244646285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.105 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds