Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47050 * 2 1 4 4 C 1.37935 * 119.92784 * 265.27559 * 3 2 1 5 5 C 1.39663 * 119.84526 * 180.26593 * 4 3 2 6 6 C 1.47825 * 120.15227 * 179.74639 * 5 4 3 7 7 C 1.39673 * 120.64986 * 309.98442 * 6 5 4 8 8 C 1.38396 * 118.47615 * 179.97438 * 7 6 5 9 9 C 1.39064 * 119.72109 * 359.97438 * 8 7 6 10 10 N 1.31275 * 121.34043 * 0.02562 * 9 8 7 11 11 C 1.33706 * 121.63629 * 359.69877 * 10 9 8 12 12 C 1.40818 * 119.93563 * 180.28916 * 11 10 9 13 13 H 1.08001 * 119.99388 * 180.28623 * 12 11 10 14 14 C 1.40145 * 120.00442 * 0.29327 * 12 11 10 15 15 N 1.30701 * 120.00132 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00422 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46835 * 59.99752 * 16 14 12 18 18 H 1.48496 * 109.47444 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47041 * 300.00163 * 16 14 12 20 20 C 1.39707 * 119.69869 * 359.73000 * 5 4 3 21 21 C 1.37891 * 119.84523 * 359.97438 * 20 5 4 22 22 C 1.38387 * 119.92219 * 84.99825 * 3 2 1 23 23 C 1.50703 * 119.84540 * 0.02562 * 22 3 2 24 24 O 1.42898 * 109.47171 * 179.72960 * 23 22 3 25 25 H 1.08996 * 109.47152 * 299.99441 * 1 2 3 26 26 H 1.08998 * 109.47374 * 60.00182 * 1 2 3 27 27 H 1.09003 * 109.46578 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47386 * 240.00137 * 2 1 3 29 29 H 1.08998 * 109.47374 * 119.99818 * 2 1 3 30 30 H 1.08005 * 120.07546 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.76374 * 0.02562 * 7 6 5 32 32 H 1.07997 * 120.14138 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.32437 * 179.97438 * 9 8 7 34 34 H 0.96998 * 120.00045 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.07544 * 179.97438 * 20 5 4 36 36 H 1.07994 * 119.92350 * 179.97438 * 21 20 5 37 37 H 1.09002 * 109.47152 * 59.72744 * 23 22 3 38 38 H 1.09001 * 109.46980 * 299.72844 * 23 22 3 39 39 H 0.96701 * 113.99881 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3545 2.0368 -1.1914 5 6 2.8251 3.3518 -1.1889 6 6 3.1778 4.0166 -2.4612 7 6 4.0174 3.3885 -3.3840 8 6 4.3176 4.0517 -4.5610 9 6 3.7829 5.3136 -4.7971 10 7 2.9946 5.8955 -3.9234 11 6 2.6649 5.3017 -2.7717 12 6 1.8114 5.9563 -1.8628 13 1 1.5482 5.4796 -0.9301 14 6 1.3035 7.2262 -2.1685 15 7 1.6224 7.8033 -3.2970 16 14 0.1708 8.0942 -0.9631 17 1 0.8791 8.2921 0.3270 18 1 -0.2246 9.4138 -1.5177 19 1 -1.0420 7.2670 -0.7401 20 6 2.9608 4.0361 0.0215 21 6 2.6292 3.4102 1.2046 22 6 2.1638 2.1065 1.1948 23 6 1.8044 1.4288 2.4920 24 8 2.0287 2.3297 3.5783 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2475 1.5019 -2.1235 31 1 4.4224 2.4075 -3.1839 32 1 4.9637 3.5909 -5.2935 33 1 4.0217 5.8255 -5.7176 34 1 1.2711 8.6824 -3.5084 35 1 3.3246 5.0530 0.0305 36 1 2.7340 3.9379 2.1410 37 1 2.4238 0.5413 2.6221 38 1 0.7538 1.1388 2.4715 39 1 1.8183 1.9592 4.4464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244646285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = -26.208188 kcal Electronic energy + Delta-G solvation = -21618.272267 eV Core-core repulsion = 18489.058842 eV Total energy + Delta-G solvation = -3129.213424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85098 -39.70491 -37.45852 -35.63368 -35.29884 -33.39813 -32.17714 -30.90800 -30.16973 -27.86793 -26.57030 -24.71504 -23.56624 -23.10866 -22.33353 -20.72482 -19.42529 -18.30991 -17.50115 -17.21008 -16.32773 -16.20870 -16.08673 -15.83099 -15.71126 -15.00071 -14.65771 -14.45500 -14.31532 -13.97328 -13.87017 -13.78276 -13.27810 -12.93682 -12.89462 -12.85441 -12.75366 -12.49627 -12.23948 -12.06179 -11.77689 -11.60767 -11.39839 -11.25788 -11.04826 -10.22634 -9.76756 -9.53531 -9.49782 -8.88931 -8.34309 -6.49666 0.28245 0.61762 0.95170 1.23388 1.34438 1.46105 1.50582 2.17522 2.79936 2.94635 3.42257 3.86567 3.97583 3.98785 4.17871 4.20010 4.26367 4.33720 4.46183 4.50764 4.52268 4.63779 4.67844 4.76673 4.81150 4.86275 4.97353 5.09464 5.11130 5.18506 5.26790 5.33506 5.40181 5.45112 5.62207 5.67869 5.78360 5.85028 6.01806 6.16403 6.24203 6.30285 6.68571 6.95832 7.01894 8.14711 8.38307 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.006224 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.145061 B = 4497.953770 C = 5766.267571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.075 4.075 4 C -0.133 4.133 5 C 0.000 4.000 6 C -0.243 4.243 7 C -0.044 4.044 8 C -0.312 4.312 9 C 0.108 3.892 10 N -0.521 5.521 11 C 0.236 3.764 12 C -0.451 4.451 13 H 0.093 0.907 14 C 0.026 3.974 15 N -0.749 5.749 16 Si 0.974 3.026 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.260 1.260 20 C -0.132 4.132 21 C -0.104 4.104 22 C -0.119 4.119 23 C 0.128 3.872 24 O -0.589 6.589 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.280 0.720 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -13.103 10.205 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.075 4.075 4 C -0.151 4.151 5 C -0.001 4.001 6 C -0.248 4.248 7 C -0.068 4.068 8 C -0.334 4.334 9 C -0.059 4.059 10 N -0.233 5.233 11 C 0.112 3.888 12 C -0.481 4.481 13 H 0.111 0.889 14 C -0.197 4.197 15 N -0.370 5.370 16 Si 0.794 3.206 17 H -0.182 1.182 18 H -0.187 1.187 19 H -0.185 1.185 20 C -0.150 4.150 21 C -0.122 4.122 22 C -0.119 4.119 23 C 0.051 3.949 24 O -0.398 6.398 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.392 -11.674 9.442 15.204 hybrid contribution 0.032 -0.146 0.364 0.393 sum -2.360 -11.820 9.806 15.538 Atomic orbital electron populations 1.21742 0.94222 1.02641 1.01655 1.20590 0.96538 0.90574 1.03973 1.19739 0.99103 0.97441 0.91260 1.21165 1.01762 0.94139 0.98040 1.18746 0.96117 0.93398 0.91834 1.19733 1.09351 0.98264 0.97448 1.21249 0.94704 0.98045 0.92771 1.21576 1.11745 0.99262 1.00866 1.23058 0.92451 0.92641 0.97713 1.68692 1.16015 1.35125 1.03479 1.18950 0.91022 0.88552 0.90295 1.20033 1.23244 1.00970 1.03900 0.88898 1.26992 0.97494 0.97983 0.97231 1.70198 1.32473 1.13071 1.21270 0.85380 0.78606 0.77839 0.78771 1.18210 1.18662 1.18478 1.21282 1.01858 0.99430 0.92450 1.20901 0.98812 0.95352 0.97099 1.19847 1.02567 0.94568 0.94916 1.20905 1.00232 0.90744 0.83024 1.86447 1.90804 1.43910 1.18680 0.92497 0.94221 0.90100 0.90539 0.88898 0.86332 0.85822 0.85313 0.84371 0.90886 0.88094 0.85481 0.90404 0.90849 0.74977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.88 71.98 0.71 -2.11 16 2 C -0.08 -1.67 5.56 29.85 0.17 -1.51 16 3 C -0.08 -2.30 5.13 -19.90 -0.10 -2.40 16 4 C -0.13 -4.99 9.18 22.54 0.21 -4.79 16 5 C 0.00 -0.01 5.02 -20.04 -0.10 -0.11 16 6 C -0.24 -12.28 5.53 -19.51 -0.11 -12.39 16 7 C -0.04 -1.97 9.67 22.65 0.22 -1.75 16 8 C -0.31 -13.83 10.10 22.51 0.23 -13.60 16 9 C 0.11 5.33 11.17 84.97 0.95 6.28 16 10 N -0.52 -29.92 7.85 -188.42 -1.48 -31.40 16 11 C 0.24 13.43 6.56 40.37 0.26 13.69 16 12 C -0.45 -25.23 7.97 23.36 0.19 -25.05 16 13 H 0.09 5.02 5.25 -2.91 -0.02 5.00 16 14 C 0.03 1.35 5.50 85.32 0.47 1.82 16 15 N -0.75 -41.33 11.46 21.86 0.25 -41.08 16 16 Si 0.97 39.78 29.56 68.60 2.03 41.80 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 C -0.13 -5.76 7.57 22.54 0.17 -5.59 16 21 C -0.10 -3.85 9.36 22.23 0.21 -3.64 16 22 C -0.12 -3.68 5.89 -19.78 -0.12 -3.80 16 23 C 0.13 2.71 6.21 71.24 0.44 3.15 16 24 O -0.59 -12.80 12.12 -148.98 -1.81 -14.60 16 25 H 0.06 1.07 6.77 -2.39 -0.02 1.06 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.53 8.05 -2.39 -0.02 1.51 16 29 H 0.09 1.48 6.81 -2.39 -0.02 1.47 16 30 H 0.12 4.23 8.05 -2.91 -0.02 4.21 16 31 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 33 H 0.14 6.01 8.06 -2.91 -0.02 5.98 16 34 H 0.28 13.98 8.29 -92.71 -0.77 13.21 16 35 H 0.10 4.78 7.26 -2.91 -0.02 4.76 16 36 H 0.13 4.50 6.99 -2.91 -0.02 4.48 16 37 H 0.08 1.27 7.48 -2.39 -0.02 1.26 16 38 H 0.07 1.30 6.75 -2.39 -0.02 1.28 16 39 H 0.40 4.09 9.12 -74.06 -0.68 3.42 16 Total: -1.00 -69.67 323.90 3.19 -66.48 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.40 Total: 30.60 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 3.79 Total: -51.81 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.23 Total: -72.48 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.81 Total: -14.60 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Total: -69.67 3.19 -66.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244646285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.275 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds