Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46892 * 2 1 4 4 C 1.37941 * 119.92136 * 265.25064 * 3 2 1 5 5 C 1.39654 * 119.84311 * 180.29331 * 4 3 2 6 6 C 1.47843 * 120.15314 * 179.74756 * 5 4 3 7 7 C 1.39303 * 120.78167 * 309.70246 * 6 5 4 8 8 N 1.31677 * 120.66028 * 179.67699 * 7 6 5 9 9 C 1.32201 * 122.50353 * 0.64246 * 8 7 6 10 10 C 1.36488 * 121.50767 * 359.64759 * 9 8 7 11 11 C 1.41118 * 119.10662 * 0.02562 * 10 9 8 12 12 C 1.40932 * 121.10912 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00041 * 154.59297 * 12 11 10 14 14 C 1.40177 * 120.00201 * 334.59347 * 12 11 10 15 15 N 1.30687 * 119.99729 * 344.36066 * 14 12 11 16 16 Si 1.86797 * 120.00029 * 164.36236 * 14 12 11 17 17 H 1.48500 * 109.47341 * 60.00447 * 16 14 12 18 18 H 1.48504 * 109.46923 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47140 * 299.99819 * 16 14 12 20 20 C 1.39691 * 119.69761 * 359.72794 * 5 4 3 21 21 C 1.37900 * 119.84737 * 0.02562 * 20 5 4 22 22 C 1.38379 * 119.92243 * 84.99621 * 3 2 1 23 23 C 1.50700 * 119.84664 * 359.97438 * 22 3 2 24 24 O 1.42900 * 109.46752 * 179.72326 * 23 22 3 25 25 H 1.09004 * 109.47044 * 60.00184 * 1 2 3 26 26 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47945 * 300.00320 * 1 2 3 28 28 H 1.09004 * 109.47232 * 240.00020 * 2 1 3 29 29 H 1.08996 * 109.46872 * 119.99564 * 2 1 3 30 30 H 1.07995 * 120.07984 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.67130 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.24748 * 179.67524 * 9 8 7 33 33 H 1.08001 * 120.44736 * 180.02562 * 10 9 8 34 34 H 0.97005 * 119.99669 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.07917 * 179.97438 * 20 5 4 36 36 H 1.08001 * 119.92390 * 179.97438 * 21 20 5 37 37 H 1.09001 * 109.47580 * 59.72462 * 23 22 3 38 38 H 1.08995 * 109.47004 * 299.71852 * 23 22 3 39 39 H 0.96703 * 114.00441 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3549 2.0366 -1.1914 5 6 2.8261 3.3513 -1.1890 6 6 3.1792 4.0159 -2.4615 7 6 4.0209 3.3942 -3.3810 8 7 4.3288 3.9856 -4.5165 9 6 3.8763 5.1854 -4.8380 10 6 3.0499 5.8829 -4.0052 11 6 2.6723 5.3076 -2.7732 12 6 1.8206 5.9902 -1.8815 13 1 1.2192 5.4346 -1.1771 14 6 1.7540 7.3901 -1.9089 15 7 2.6795 8.0763 -2.5256 16 14 0.3424 8.2747 -1.0637 17 1 0.3469 7.9440 0.3840 18 1 0.5028 9.7409 -1.2365 19 1 -0.9442 7.8425 -1.6663 20 6 2.9618 4.0356 0.0212 21 6 2.6307 3.4096 1.2045 22 6 2.1637 2.1066 1.1948 23 6 1.8032 1.4292 2.4918 24 8 2.0279 2.3301 3.5781 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2476 1.5019 -2.1235 31 1 4.4205 2.4148 -3.1629 32 1 4.1667 5.6235 -5.7815 33 1 2.6899 6.8618 -4.2853 34 1 2.6332 9.0451 -2.5448 35 1 3.3259 5.0523 0.0303 36 1 2.7355 3.9374 2.1409 37 1 2.4218 0.5413 2.6223 38 1 0.7525 1.1402 2.4709 39 1 1.8161 1.9603 4.4461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244647551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -20.632122 kcal Electronic energy + Delta-G solvation = -21600.356649 eV Core-core repulsion = 18471.385021 eV Total energy + Delta-G solvation = -3128.971628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.37724 -38.16178 -36.42131 -34.36236 -33.92963 -31.85796 -30.39977 -29.08395 -28.90310 -26.31574 -25.17839 -23.51521 -21.95990 -21.45354 -20.92028 -19.22307 -17.64783 -17.31554 -15.82457 -15.58331 -15.00066 -14.90307 -14.66560 -14.48829 -14.25924 -13.63219 -13.36415 -13.17395 -12.75450 -12.59280 -12.55543 -12.24328 -11.94558 -11.58852 -11.49560 -11.39872 -11.27628 -11.06416 -11.00017 -10.57601 -10.35334 -10.25137 -10.10849 -9.74943 -9.49419 -8.41351 -8.10822 -7.99144 -7.86042 -7.28938 -6.90894 -4.64627 1.80801 2.08941 2.73147 2.84315 2.97659 3.01267 3.21634 3.79646 4.31170 4.41546 4.57314 5.03092 5.08507 5.31706 5.37489 5.41619 5.54737 5.60247 5.68058 5.73977 5.81711 5.89033 5.95177 6.04133 6.26451 6.28969 6.31858 6.38376 6.70903 6.73158 6.82726 6.86572 7.06388 7.08654 7.16282 7.33344 7.37879 7.53842 7.68348 7.69557 7.84656 8.04254 8.38432 8.63622 8.67925 9.58196 9.95447 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.006199 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.585766 B = 4515.623163 C = 5813.116814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.084 4.084 4 C -0.127 4.127 5 C 0.028 3.972 6 C -0.235 4.235 7 C 0.129 3.871 8 N -0.579 5.579 9 C 0.081 3.919 10 C -0.209 4.209 11 C 0.146 3.854 12 C -0.440 4.440 13 H 0.087 0.913 14 C 0.078 3.922 15 N -0.779 5.779 16 Si 0.909 3.091 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.104 4.104 21 C -0.098 4.098 22 C -0.121 4.121 23 C 0.125 3.875 24 O -0.568 6.568 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.286 0.714 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -9.039 8.236 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.145 4.145 5 C 0.027 3.973 6 C -0.240 4.240 7 C -0.029 4.029 8 N -0.293 5.293 9 C -0.066 4.066 10 C -0.231 4.231 11 C 0.138 3.862 12 C -0.470 4.470 13 H 0.105 0.895 14 C -0.143 4.143 15 N -0.403 5.403 16 Si 0.733 3.267 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.121 4.121 23 C 0.048 3.952 24 O -0.373 6.373 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.234 -8.788 7.038 11.714 hybrid contribution -1.321 0.707 1.359 2.022 sum -4.555 -8.081 8.397 12.512 Atomic orbital electron populations 1.21749 0.95185 1.01051 1.02417 1.20490 0.95890 0.93389 1.02197 1.19306 1.01150 0.95505 0.92458 1.21055 1.01698 0.95186 0.96547 1.18705 0.93826 0.91970 0.92760 1.19554 1.08729 0.99581 0.96185 1.22077 0.94254 0.97298 0.89300 1.67311 1.29821 1.12201 1.20001 1.21716 0.95588 0.91080 0.98261 1.21904 1.03819 1.02232 0.95112 1.17731 0.88327 0.89073 0.91101 1.19598 1.20424 0.90919 1.16067 0.89527 1.26027 0.95912 0.98135 0.94204 1.69737 1.29099 1.09041 1.32435 0.86325 0.81644 0.78014 0.80752 1.18509 1.20085 1.18562 1.21441 0.99386 1.00200 0.91219 1.20807 0.98645 0.94095 0.98056 1.19309 1.04802 0.95484 0.92504 1.20854 0.98540 0.90761 0.85022 1.86514 1.90466 1.43086 1.17213 0.92281 0.92872 0.92785 0.91242 0.91723 0.86684 0.86166 0.86457 0.85690 0.90303 0.85512 0.86028 0.93170 0.93005 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.88 37.16 0.37 -1.29 16 2 C -0.08 -1.02 5.56 -27.88 -0.15 -1.17 16 3 C -0.08 -1.36 5.13 -104.68 -0.54 -1.90 16 4 C -0.13 -2.36 9.18 -39.16 -0.36 -2.72 16 5 C 0.03 0.61 5.00 -104.90 -0.52 0.08 16 6 C -0.24 -5.64 5.54 -104.04 -0.58 -6.21 16 7 C 0.13 3.01 10.72 -17.22 -0.18 2.83 16 8 N -0.58 -14.14 10.32 -13.37 -0.14 -14.27 16 9 C 0.08 1.95 11.09 -18.02 -0.20 1.75 16 10 C -0.21 -5.30 8.72 -39.12 -0.34 -5.64 16 11 C 0.15 3.75 5.59 -106.26 -0.59 3.16 16 12 C -0.44 -11.08 7.30 -37.83 -0.28 -11.36 16 13 H 0.09 2.17 6.70 -52.48 -0.35 1.82 16 14 C 0.08 1.86 5.21 -17.31 -0.09 1.77 16 15 N -0.78 -19.07 10.95 55.56 0.61 -18.46 16 16 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 17 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.10 -2.19 8.07 -39.16 -0.32 -2.51 16 21 C -0.10 -1.83 9.36 -39.64 -0.37 -2.20 16 22 C -0.12 -2.00 5.89 -104.50 -0.62 -2.61 16 23 C 0.13 1.59 6.22 36.01 0.22 1.81 16 24 O -0.57 -7.15 12.12 -35.23 -0.43 -7.58 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.60 6.77 -51.93 -0.35 0.25 16 28 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 29 H 0.06 0.69 6.81 -51.93 -0.35 0.34 16 30 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.12 2.50 8.06 -52.48 -0.42 2.07 16 32 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 33 H 0.13 3.20 6.27 -52.49 -0.33 2.87 16 34 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 35 H 0.13 2.84 7.37 -52.49 -0.39 2.46 16 36 H 0.12 2.19 6.99 -52.49 -0.37 1.83 16 37 H 0.05 0.55 7.48 -51.93 -0.39 0.16 16 38 H 0.05 0.58 6.75 -51.93 -0.35 0.23 16 39 H 0.38 2.66 9.12 45.56 0.42 3.08 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -28.71 323.79 -8.78 -37.50 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.13 Total: 11.12 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -4.55 Total: -26.21 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.47 Total: -32.74 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.43 Total: -7.58 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.71 -8.78 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244647551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.867 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds