Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46892 * 2 1 4 4 C 1.37941 * 119.92136 * 265.25064 * 3 2 1 5 5 C 1.39654 * 119.84311 * 180.29331 * 4 3 2 6 6 C 1.47843 * 120.15314 * 179.74756 * 5 4 3 7 7 C 1.39303 * 120.78167 * 309.70246 * 6 5 4 8 8 N 1.31677 * 120.66028 * 179.67699 * 7 6 5 9 9 C 1.32201 * 122.50353 * 0.64246 * 8 7 6 10 10 C 1.36488 * 121.50767 * 359.64759 * 9 8 7 11 11 C 1.41118 * 119.10662 * 0.02562 * 10 9 8 12 12 C 1.40932 * 121.10912 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00041 * 154.59297 * 12 11 10 14 14 C 1.40177 * 120.00201 * 334.59347 * 12 11 10 15 15 N 1.30687 * 119.99729 * 344.36066 * 14 12 11 16 16 Si 1.86797 * 120.00029 * 164.36236 * 14 12 11 17 17 H 1.48500 * 109.47341 * 60.00447 * 16 14 12 18 18 H 1.48504 * 109.46923 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47140 * 299.99819 * 16 14 12 20 20 C 1.39691 * 119.69761 * 359.72794 * 5 4 3 21 21 C 1.37900 * 119.84737 * 0.02562 * 20 5 4 22 22 C 1.38379 * 119.92243 * 84.99621 * 3 2 1 23 23 C 1.50700 * 119.84664 * 359.97438 * 22 3 2 24 24 O 1.42900 * 109.46752 * 179.72326 * 23 22 3 25 25 H 1.09004 * 109.47044 * 60.00184 * 1 2 3 26 26 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47945 * 300.00320 * 1 2 3 28 28 H 1.09004 * 109.47232 * 240.00020 * 2 1 3 29 29 H 1.08996 * 109.46872 * 119.99564 * 2 1 3 30 30 H 1.07995 * 120.07984 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.67130 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.24748 * 179.67524 * 9 8 7 33 33 H 1.08001 * 120.44736 * 180.02562 * 10 9 8 34 34 H 0.97005 * 119.99669 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.07917 * 179.97438 * 20 5 4 36 36 H 1.08001 * 119.92390 * 179.97438 * 21 20 5 37 37 H 1.09001 * 109.47580 * 59.72462 * 23 22 3 38 38 H 1.08995 * 109.47004 * 299.71852 * 23 22 3 39 39 H 0.96703 * 114.00441 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3549 2.0366 -1.1914 5 6 2.8261 3.3513 -1.1890 6 6 3.1792 4.0159 -2.4615 7 6 4.0209 3.3942 -3.3810 8 7 4.3288 3.9856 -4.5165 9 6 3.8763 5.1854 -4.8380 10 6 3.0499 5.8829 -4.0052 11 6 2.6723 5.3076 -2.7732 12 6 1.8206 5.9902 -1.8815 13 1 1.2192 5.4346 -1.1771 14 6 1.7540 7.3901 -1.9089 15 7 2.6795 8.0763 -2.5256 16 14 0.3424 8.2747 -1.0637 17 1 0.3469 7.9440 0.3840 18 1 0.5028 9.7409 -1.2365 19 1 -0.9442 7.8425 -1.6663 20 6 2.9618 4.0356 0.0212 21 6 2.6307 3.4096 1.2045 22 6 2.1637 2.1066 1.1948 23 6 1.8032 1.4292 2.4918 24 8 2.0279 2.3301 3.5781 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2476 1.5019 -2.1235 31 1 4.4205 2.4148 -3.1629 32 1 4.1667 5.6235 -5.7815 33 1 2.6899 6.8618 -4.2853 34 1 2.6332 9.0451 -2.5448 35 1 3.3259 5.0523 0.0303 36 1 2.7355 3.9374 2.1409 37 1 2.4218 0.5413 2.6223 38 1 0.7525 1.1402 2.4709 39 1 1.8161 1.9603 4.4461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244647551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -37.326699 kcal Electronic energy + Delta-G solvation = -21601.080580 eV Core-core repulsion = 18471.385021 eV Total energy + Delta-G solvation = -3129.695559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87798 -39.83226 -37.46849 -36.13075 -35.26434 -33.35712 -32.22031 -30.65066 -30.19613 -28.08611 -26.60008 -24.69226 -23.58250 -23.20498 -22.35449 -20.69206 -19.51788 -18.31036 -17.50072 -17.15457 -16.48374 -16.20453 -16.17316 -15.88909 -15.73671 -14.98464 -14.67651 -14.44634 -14.32059 -14.23070 -14.04546 -13.77191 -13.42057 -13.23434 -13.01164 -12.80083 -12.63822 -12.47775 -12.18388 -12.04551 -11.88153 -11.64336 -11.35592 -11.28924 -11.06890 -10.10350 -9.93768 -9.71365 -9.51001 -8.97109 -8.69234 -6.55710 0.24964 0.63041 0.94816 1.05918 1.33161 1.44043 1.52163 2.12581 2.70897 2.93757 3.42338 3.67385 3.92175 3.97115 4.04235 4.19970 4.23412 4.35553 4.47412 4.51561 4.53001 4.64689 4.69576 4.80941 4.85083 4.94392 4.99520 5.11064 5.12932 5.18663 5.27829 5.34336 5.40481 5.45768 5.52645 5.66154 5.78848 5.85643 6.01893 6.17222 6.24668 6.48824 6.74169 6.78348 7.01666 7.67809 8.16546 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.006199 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.585766 B = 4515.623163 C = 5813.116814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.076 4.076 4 C -0.130 4.130 5 C -0.002 4.002 6 C -0.238 4.238 7 C 0.119 3.881 8 N -0.589 5.589 9 C 0.077 3.923 10 C -0.230 4.230 11 C 0.116 3.884 12 C -0.459 4.459 13 H 0.078 0.922 14 C 0.042 3.958 15 N -0.806 5.806 16 Si 0.976 3.024 17 H -0.260 1.260 18 H -0.261 1.261 19 H -0.259 1.259 20 C -0.122 4.122 21 C -0.106 4.106 22 C -0.116 4.116 23 C 0.127 3.873 24 O -0.590 6.590 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.294 0.706 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -11.191 10.115 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.076 4.076 4 C -0.148 4.148 5 C -0.003 4.003 6 C -0.243 4.243 7 C -0.038 4.038 8 N -0.304 5.304 9 C -0.071 4.071 10 C -0.252 4.252 11 C 0.108 3.892 12 C -0.489 4.489 13 H 0.096 0.904 14 C -0.177 4.177 15 N -0.431 5.431 16 Si 0.796 3.204 17 H -0.185 1.185 18 H -0.185 1.185 19 H -0.183 1.183 20 C -0.141 4.141 21 C -0.124 4.124 22 C -0.116 4.116 23 C 0.050 3.950 24 O -0.399 6.399 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.140 0.860 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.517 -10.965 8.936 14.849 hybrid contribution -0.887 1.272 0.867 1.777 sum -5.405 -9.693 9.802 14.807 Atomic orbital electron populations 1.21740 0.94178 1.02628 1.01680 1.20593 0.96571 0.90551 1.03997 1.19732 0.99233 0.97435 0.91228 1.21193 1.01437 0.94038 0.98142 1.18684 0.96472 0.93455 0.91686 1.19884 1.07990 0.99135 0.97332 1.22469 0.94079 0.98224 0.89051 1.67376 1.30086 1.12329 1.20580 1.22059 0.95043 0.91017 0.98977 1.21903 1.05285 1.02314 0.95737 1.18135 0.89089 0.90381 0.91624 1.19673 1.20963 0.91896 1.16358 0.90353 1.26800 0.97982 0.98248 0.94652 1.69771 1.30345 1.09763 1.33210 0.85331 0.78253 0.77425 0.79399 1.18465 1.18520 1.18295 1.21231 1.01182 0.99207 0.92441 1.20884 0.99079 0.95416 0.97060 1.19846 1.02325 0.94482 0.94956 1.20918 1.00270 0.90749 0.83030 1.86452 1.90754 1.43990 1.18713 0.94080 0.90168 0.92533 0.90458 0.88990 0.86033 0.83752 0.84010 0.86625 0.89441 0.88534 0.85768 0.90399 0.90761 0.74989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.88 71.98 0.71 -2.01 16 2 C -0.08 -1.65 5.56 29.85 0.17 -1.49 16 3 C -0.08 -2.29 5.13 -19.90 -0.10 -2.40 16 4 C -0.13 -4.79 9.18 22.54 0.21 -4.58 16 5 C 0.00 -0.10 5.00 -20.04 -0.10 -0.20 16 6 C -0.24 -11.89 5.54 -19.49 -0.11 -12.00 16 7 C 0.12 5.65 10.72 84.97 0.91 6.56 16 8 N -0.59 -29.18 10.32 -196.20 -2.02 -31.21 16 9 C 0.08 3.81 11.09 84.23 0.93 4.75 16 10 C -0.23 -12.20 8.72 22.57 0.20 -12.01 16 11 C 0.12 6.25 5.59 -20.92 -0.12 6.13 16 12 C -0.46 -24.24 7.30 23.40 0.17 -24.07 16 13 H 0.08 4.14 6.70 -2.91 -0.02 4.12 16 14 C 0.04 2.04 5.21 85.33 0.44 2.49 16 15 N -0.81 -40.79 10.95 21.86 0.24 -40.55 16 16 Si 0.98 37.58 29.59 68.60 2.03 39.61 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 18 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 C -0.12 -5.37 8.07 22.54 0.18 -5.18 16 21 C -0.11 -3.98 9.36 22.23 0.21 -3.77 16 22 C -0.12 -3.58 5.89 -19.79 -0.12 -3.70 16 23 C 0.13 2.69 6.22 71.24 0.44 3.14 16 24 O -0.59 -12.94 12.12 -148.98 -1.81 -14.74 16 25 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.03 6.77 -2.39 -0.02 1.02 16 28 H 0.08 1.52 8.05 -2.38 -0.02 1.50 16 29 H 0.09 1.45 6.81 -2.39 -0.02 1.44 16 30 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.15 6.00 8.06 -2.91 -0.02 5.97 16 32 H 0.14 6.09 8.06 -2.91 -0.02 6.06 16 33 H 0.12 6.23 6.27 -2.91 -0.02 6.21 16 34 H 0.29 13.40 8.29 -92.70 -0.77 12.63 16 35 H 0.10 4.70 7.37 -2.91 -0.02 4.67 16 36 H 0.12 4.49 6.99 -2.91 -0.02 4.47 16 37 H 0.08 1.28 7.48 -2.39 -0.02 1.26 16 38 H 0.07 1.30 6.75 -2.39 -0.02 1.28 16 39 H 0.40 4.17 9.12 -74.06 -0.68 3.49 16 Total: -1.00 -64.76 323.79 2.87 -61.89 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.40 Total: 33.34 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 4.03 Total: -48.34 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.78 Total: -71.76 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.81 Total: -14.74 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -64.76 2.87 -61.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244647551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.560 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds