Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.46819 * 2 1 4 4 C 1.38045 * 119.93753 * 265.27364 * 3 2 1 5 5 C 1.39324 * 119.87311 * 180.27406 * 4 3 2 6 6 C 1.48392 * 120.11851 * 179.70960 * 5 4 3 7 7 C 1.40040 * 120.82150 * 359.74019 * 6 5 4 8 8 C 1.38510 * 119.41977 * 179.70610 * 7 6 5 9 9 N 1.31476 * 121.14285 * 0.58736 * 8 7 6 10 10 C 1.33644 * 121.79855 * 359.71215 * 9 8 7 11 11 C 1.41428 * 119.77654 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99544 * 179.97438 * 11 10 9 13 13 C 1.40026 * 120.00302 * 359.97438 * 11 10 9 14 14 N 1.30739 * 119.99919 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00131 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47298 * 89.99594 * 15 13 11 17 17 H 1.48497 * 109.47145 * 210.00033 * 15 13 11 18 18 H 1.48503 * 109.47217 * 329.99686 * 15 13 11 19 19 C 1.39310 * 120.81909 * 180.02562 * 6 5 4 20 20 C 1.39365 * 119.75992 * 359.72540 * 5 4 3 21 21 C 1.37997 * 119.87581 * 0.02562 * 20 5 4 22 22 C 1.38299 * 119.94352 * 85.00467 * 3 2 1 23 23 C 1.50703 * 119.87383 * 359.97438 * 22 3 2 24 24 O 1.42898 * 109.47171 * 179.73136 * 23 22 3 25 25 H 1.09001 * 109.46544 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46616 * 299.99792 * 1 2 3 27 27 H 1.08996 * 109.47397 * 59.99833 * 1 2 3 28 28 H 1.09003 * 109.46616 * 240.00208 * 2 1 3 29 29 H 1.08996 * 109.47397 * 120.00166 * 2 1 3 30 30 H 1.07997 * 120.06132 * 0.02562 * 4 3 2 31 31 H 1.07993 * 120.29028 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.42753 * 180.29795 * 8 7 6 33 33 H 0.97009 * 119.99650 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.58362 * 359.96941 * 19 6 5 35 35 H 1.07996 * 120.05743 * 180.02562 * 20 5 4 36 36 H 1.07994 * 119.93341 * 179.97438 * 21 20 5 37 37 H 1.09002 * 109.47152 * 59.72920 * 23 22 3 38 38 H 1.09001 * 109.46980 * 299.73020 * 23 22 3 39 39 H 0.96701 * 113.99881 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3549 2.0375 -1.1922 5 6 2.8245 3.3492 -1.1902 6 6 3.1789 4.0152 -2.4680 7 6 3.0534 3.3395 -3.6882 8 6 3.3867 3.9911 -4.8641 9 7 3.8296 5.2290 -4.8536 10 6 3.9734 5.9158 -3.7162 11 6 4.4532 7.2456 -3.7546 12 1 4.5704 7.8041 -2.8376 13 6 4.7763 7.8383 -4.9815 14 7 4.6349 7.1621 -6.0914 15 14 5.4106 9.5945 -5.0321 16 1 6.8918 9.5891 -4.9271 17 1 5.0074 10.2297 -6.3124 18 1 4.8368 10.3611 -3.8970 19 6 3.6504 5.3260 -2.4829 20 6 2.9605 4.0334 0.0163 21 6 2.6302 3.4089 1.2018 22 6 2.1640 2.1064 1.1938 23 6 1.8040 1.4301 2.4915 24 8 2.0290 2.3318 3.5771 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5138 0.8899 30 1 2.2472 1.5028 -2.1243 31 1 2.6957 2.3208 -3.7125 32 1 3.2853 3.4718 -5.8056 33 1 4.8591 7.5726 -6.9413 34 1 3.7650 5.8792 -1.5625 35 1 3.3237 5.0504 0.0235 36 1 2.7357 3.9380 2.1372 37 1 2.4227 0.5423 2.6224 38 1 0.7532 1.1409 2.4712 39 1 1.8182 1.9622 4.4455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244648415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -8.094638 kcal Electronic energy + Delta-G solvation = -20910.190209 eV Core-core repulsion = 17781.762248 eV Total energy + Delta-G solvation = -3128.427962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.66746 -38.06174 -36.64451 -34.46574 -33.56432 -32.09680 -30.20188 -29.47845 -29.18341 -25.90268 -25.62119 -23.76639 -22.06513 -21.92086 -20.62851 -19.61132 -17.51826 -17.31952 -16.19836 -15.52408 -15.23873 -15.00599 -14.71359 -14.46519 -14.10046 -13.76794 -13.36821 -13.29354 -12.97774 -12.94318 -12.54395 -12.32636 -11.87891 -11.78295 -11.65985 -11.35404 -11.19255 -11.15660 -10.91691 -10.69317 -10.42304 -10.38509 -10.26307 -9.77853 -9.47016 -8.95215 -8.43321 -7.67148 -7.58401 -7.39316 -6.41100 -4.53798 1.36442 1.74080 2.75242 3.04561 3.08869 3.11934 3.19967 3.94297 4.09524 4.22259 4.78137 4.80223 4.86652 5.06134 5.14486 5.22452 5.34406 5.38328 5.47066 5.55398 5.73724 5.74857 5.90765 5.91533 6.00428 6.08583 6.12515 6.25475 6.33759 6.54905 6.67932 6.73059 6.75787 6.86473 7.01443 7.16049 7.28511 7.34457 7.47862 7.53858 7.72487 8.00192 8.21330 8.64210 8.90089 10.10038 10.31020 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.003655 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.978670 B = 7658.341646 C = 8596.822314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.111 4.111 5 C -0.013 4.013 6 C -0.003 4.003 7 C -0.304 4.304 8 C 0.124 3.876 9 N -0.483 5.483 10 C 0.254 3.746 11 C -0.432 4.432 12 H 0.084 0.916 13 C 0.069 3.931 14 N -0.716 5.716 15 Si 0.907 3.093 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.252 4.252 20 C -0.119 4.119 21 C -0.094 4.094 22 C -0.110 4.110 23 C 0.123 3.877 24 O -0.569 6.569 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.273 0.727 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -10.740 12.370 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.129 4.129 5 C -0.013 4.013 6 C -0.009 4.009 7 C -0.327 4.327 8 C -0.041 4.041 9 N -0.196 5.196 10 C 0.130 3.870 11 C -0.463 4.463 12 H 0.102 0.898 13 C -0.156 4.156 14 N -0.337 5.337 15 Si 0.731 3.269 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.275 4.275 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.110 4.110 23 C 0.046 3.954 24 O -0.374 6.374 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.998 -9.882 10.855 15.507 hybrid contribution -0.106 -0.071 1.115 1.123 sum -5.104 -9.953 11.970 16.383 Atomic orbital electron populations 1.21756 0.94916 1.01377 1.02410 1.20523 0.96070 0.92979 1.02607 1.19430 1.00603 0.95853 0.92344 1.21063 1.00059 0.94643 0.97131 1.19093 0.95988 0.93158 0.93098 1.18608 0.97709 0.93764 0.90834 1.21333 1.17510 1.00510 0.93345 1.22454 0.93705 0.92331 0.95643 1.68712 1.16373 1.05764 1.28712 1.18553 0.89053 0.93191 0.86238 1.19628 1.36637 0.96212 0.93852 0.89821 1.26065 0.94499 0.99662 0.95403 1.70139 1.29369 1.35803 0.98390 0.86331 0.79753 0.81997 0.78779 1.19383 1.20098 1.18517 1.21881 1.11643 0.95279 0.98663 1.21358 1.00409 1.00373 0.91619 1.20829 0.98098 0.94244 0.98002 1.19401 1.03441 0.95344 0.92833 1.20879 0.98859 0.90866 0.84824 1.86486 1.90545 1.43017 1.17343 0.92575 0.92755 0.92224 0.90939 0.91425 0.85697 0.88540 0.86309 0.91606 0.87917 0.85594 0.85452 0.92784 0.92638 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.88 37.16 0.37 -1.04 16 2 C -0.08 -0.90 5.56 -27.88 -0.15 -1.06 16 3 C -0.08 -1.18 5.13 -104.67 -0.54 -1.72 16 4 C -0.11 -1.88 9.08 -39.25 -0.36 -2.24 16 5 C -0.01 -0.26 5.88 -104.89 -0.62 -0.88 16 6 C 0.00 -0.07 5.91 -104.64 -0.62 -0.69 16 7 C -0.30 -6.88 9.52 -38.81 -0.37 -7.25 16 8 C 0.12 3.03 11.17 -17.60 -0.20 2.83 16 9 N -0.48 -13.49 7.85 -11.20 -0.09 -13.58 16 10 C 0.25 7.04 6.55 -85.02 -0.56 6.48 16 11 C -0.43 -11.66 9.14 -37.70 -0.34 -12.01 16 12 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 13 C 0.07 1.77 5.50 -17.35 -0.10 1.67 16 14 N -0.72 -19.23 11.46 55.55 0.64 -18.59 16 15 Si 0.91 18.69 29.56 -169.99 -5.02 13.67 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 19 C -0.25 -6.27 9.22 -38.34 -0.35 -6.63 16 20 C -0.12 -2.17 9.45 -39.25 -0.37 -2.54 16 21 C -0.09 -1.51 9.36 -39.63 -0.37 -1.88 16 22 C -0.11 -1.59 5.88 -104.56 -0.62 -2.20 16 23 C 0.12 1.31 6.22 36.01 0.22 1.53 16 24 O -0.57 -6.00 12.13 -35.23 -0.43 -6.43 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.51 6.77 -51.93 -0.35 0.15 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.74 8.05 -51.93 -0.42 0.33 16 29 H 0.07 0.62 6.82 -51.93 -0.35 0.26 16 30 H 0.13 2.00 6.29 -52.49 -0.33 1.67 16 31 H 0.10 1.90 6.32 -52.49 -0.33 1.57 16 32 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 33 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 34 H 0.10 2.37 6.33 -52.49 -0.33 2.03 16 35 H 0.13 2.25 6.29 -52.49 -0.33 1.92 16 36 H 0.13 1.93 6.99 -52.49 -0.37 1.56 16 37 H 0.05 0.50 7.48 -51.93 -0.39 0.11 16 38 H 0.06 0.51 6.75 -51.93 -0.35 0.16 16 39 H 0.38 1.98 9.12 45.56 0.42 2.40 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -31.31 323.44 -8.95 -40.25 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -3.95 Total: 7.40 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -4.97 Total: -27.60 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.55 Total: -32.17 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.43 Total: -6.43 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.31 -8.95 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244648415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.158 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds