Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.46819 * 2 1 4 4 C 1.38045 * 119.93753 * 265.27364 * 3 2 1 5 5 C 1.39324 * 119.87311 * 180.27406 * 4 3 2 6 6 C 1.48392 * 120.11851 * 179.70960 * 5 4 3 7 7 C 1.40040 * 120.82150 * 359.74019 * 6 5 4 8 8 C 1.38510 * 119.41977 * 179.70610 * 7 6 5 9 9 N 1.31476 * 121.14285 * 0.58736 * 8 7 6 10 10 C 1.33644 * 121.79855 * 359.71215 * 9 8 7 11 11 C 1.41428 * 119.77654 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99544 * 179.97438 * 11 10 9 13 13 C 1.40026 * 120.00302 * 359.97438 * 11 10 9 14 14 N 1.30739 * 119.99919 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00131 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47298 * 89.99594 * 15 13 11 17 17 H 1.48497 * 109.47145 * 210.00033 * 15 13 11 18 18 H 1.48503 * 109.47217 * 329.99686 * 15 13 11 19 19 C 1.39310 * 120.81909 * 180.02562 * 6 5 4 20 20 C 1.39365 * 119.75992 * 359.72540 * 5 4 3 21 21 C 1.37997 * 119.87581 * 0.02562 * 20 5 4 22 22 C 1.38299 * 119.94352 * 85.00467 * 3 2 1 23 23 C 1.50703 * 119.87383 * 359.97438 * 22 3 2 24 24 O 1.42898 * 109.47171 * 179.73136 * 23 22 3 25 25 H 1.09001 * 109.46544 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46616 * 299.99792 * 1 2 3 27 27 H 1.08996 * 109.47397 * 59.99833 * 1 2 3 28 28 H 1.09003 * 109.46616 * 240.00208 * 2 1 3 29 29 H 1.08996 * 109.47397 * 120.00166 * 2 1 3 30 30 H 1.07997 * 120.06132 * 0.02562 * 4 3 2 31 31 H 1.07993 * 120.29028 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.42753 * 180.29795 * 8 7 6 33 33 H 0.97009 * 119.99650 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.58362 * 359.96941 * 19 6 5 35 35 H 1.07996 * 120.05743 * 180.02562 * 20 5 4 36 36 H 1.07994 * 119.93341 * 179.97438 * 21 20 5 37 37 H 1.09002 * 109.47152 * 59.72920 * 23 22 3 38 38 H 1.09001 * 109.46980 * 299.73020 * 23 22 3 39 39 H 0.96701 * 113.99881 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3549 2.0375 -1.1922 5 6 2.8245 3.3492 -1.1902 6 6 3.1789 4.0152 -2.4680 7 6 3.0534 3.3395 -3.6882 8 6 3.3867 3.9911 -4.8641 9 7 3.8296 5.2290 -4.8536 10 6 3.9734 5.9158 -3.7162 11 6 4.4532 7.2456 -3.7546 12 1 4.5704 7.8041 -2.8376 13 6 4.7763 7.8383 -4.9815 14 7 4.6349 7.1621 -6.0914 15 14 5.4106 9.5945 -5.0321 16 1 6.8918 9.5891 -4.9271 17 1 5.0074 10.2297 -6.3124 18 1 4.8368 10.3611 -3.8970 19 6 3.6504 5.3260 -2.4829 20 6 2.9605 4.0334 0.0163 21 6 2.6302 3.4089 1.2018 22 6 2.1640 2.1064 1.1938 23 6 1.8040 1.4301 2.4915 24 8 2.0290 2.3318 3.5771 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5138 0.8899 30 1 2.2472 1.5028 -2.1243 31 1 2.6957 2.3208 -3.7125 32 1 3.2853 3.4718 -5.8056 33 1 4.8591 7.5726 -6.9413 34 1 3.7650 5.8792 -1.5625 35 1 3.3237 5.0504 0.0235 36 1 2.7357 3.9380 2.1372 37 1 2.4227 0.5423 2.6224 38 1 0.7532 1.1409 2.4712 39 1 1.8182 1.9622 4.4455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244648415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -27.155031 kcal Electronic energy + Delta-G solvation = -20911.016730 eV Core-core repulsion = 17781.762248 eV Total energy + Delta-G solvation = -3129.254483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97721 -39.78964 -37.55887 -35.80828 -35.21420 -33.53199 -32.04692 -30.96274 -30.34046 -27.71353 -26.90769 -24.87558 -23.65524 -23.33936 -22.18383 -21.03332 -19.09119 -18.37119 -17.72624 -17.15244 -16.39825 -16.27317 -15.96472 -15.90983 -15.54069 -15.19742 -14.65802 -14.43135 -14.38592 -14.30141 -14.11384 -13.79892 -13.24144 -13.12049 -12.94218 -12.73804 -12.66762 -12.59500 -12.36587 -12.01929 -11.80887 -11.66059 -11.37600 -11.36640 -11.13121 -10.51065 -9.68867 -9.62621 -9.54277 -8.93761 -8.32045 -6.55685 -0.06010 0.46712 0.86866 1.36329 1.38888 1.52720 1.55566 2.21541 2.73603 2.97453 3.34544 3.74440 3.84434 3.93236 3.97387 4.06965 4.19644 4.24071 4.38693 4.47874 4.52771 4.57345 4.63192 4.67498 4.71267 4.84372 4.97019 4.99448 5.10431 5.14821 5.16606 5.24390 5.37985 5.43315 5.49044 5.53433 5.61873 5.68922 5.93254 6.06850 6.14561 6.25648 6.69492 6.92210 6.97909 8.15135 8.43183 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.003655 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.978670 B = 7658.341646 C = 8596.822314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.078 4.078 4 C -0.113 4.113 5 C -0.051 4.051 6 C 0.001 3.999 7 C -0.299 4.299 8 C 0.106 3.894 9 N -0.521 5.521 10 C 0.224 3.776 11 C -0.471 4.471 12 H 0.087 0.913 13 C 0.024 3.976 14 N -0.757 5.757 15 Si 0.989 3.011 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.256 1.256 19 C -0.279 4.279 20 C -0.132 4.132 21 C -0.102 4.102 22 C -0.102 4.102 23 C 0.124 3.876 24 O -0.589 6.589 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.280 0.720 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 -12.788 14.441 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.131 4.131 5 C -0.051 4.051 6 C -0.005 4.005 7 C -0.321 4.321 8 C -0.058 4.058 9 N -0.235 5.235 10 C 0.100 3.900 11 C -0.503 4.503 12 H 0.105 0.895 13 C -0.198 4.198 14 N -0.379 5.379 15 Si 0.809 3.191 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.179 1.179 19 C -0.301 4.301 20 C -0.150 4.150 21 C -0.120 4.120 22 C -0.102 4.102 23 C 0.047 3.953 24 O -0.399 6.399 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.898 -11.964 12.953 18.593 hybrid contribution 0.069 0.332 0.655 0.738 sum -5.829 -11.631 13.608 18.827 Atomic orbital electron populations 1.21751 0.93869 1.02795 1.01877 1.20628 0.96795 0.90326 1.04221 1.19829 0.99071 0.97670 0.91203 1.21225 0.99594 0.93544 0.98749 1.19019 0.99487 0.94757 0.91860 1.19006 0.95619 0.93083 0.92797 1.21669 1.16111 1.01753 0.92600 1.22939 0.93514 0.91880 0.97470 1.68655 1.18089 1.07330 1.29391 1.18977 0.89805 0.94031 0.87230 1.19990 1.38481 0.96814 0.94974 0.89479 1.27014 0.94063 1.04320 0.94382 1.70234 1.30431 1.38051 0.99138 0.85114 0.79123 0.75755 0.79125 1.18617 1.19005 1.17944 1.21983 1.13357 0.96686 0.98105 1.21366 1.01140 1.00177 0.92323 1.20968 0.98388 0.95362 0.97288 1.19966 1.00675 0.94521 0.95071 1.20956 1.00581 0.90817 0.82948 1.86425 1.90824 1.43843 1.18781 0.90218 0.92334 0.93785 0.90368 0.88872 0.85041 0.85285 0.84018 0.90962 0.87492 0.86776 0.84676 0.90285 0.90327 0.74737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.88 71.98 0.71 -1.48 16 2 C -0.08 -1.41 5.56 29.85 0.17 -1.25 16 3 C -0.08 -2.01 5.13 -19.90 -0.10 -2.11 16 4 C -0.11 -3.68 9.08 22.49 0.20 -3.48 16 5 C -0.05 -2.03 5.88 -20.04 -0.12 -2.15 16 6 C 0.00 0.05 5.91 -19.88 -0.12 -0.06 16 7 C -0.30 -13.67 9.52 22.77 0.22 -13.45 16 8 C 0.11 5.33 11.17 84.81 0.95 6.27 16 9 N -0.52 -30.50 7.85 -189.36 -1.49 -31.99 16 10 C 0.22 13.14 6.55 40.20 0.26 13.40 16 11 C -0.47 -26.83 9.14 23.49 0.21 -26.61 16 12 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 13 C 0.02 1.25 5.50 85.29 0.47 1.72 16 14 N -0.76 -42.23 11.46 21.84 0.25 -41.98 16 15 Si 0.99 39.34 29.56 68.60 2.03 41.37 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 17 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 19 C -0.28 -14.72 9.22 23.07 0.21 -14.51 16 20 C -0.13 -4.90 9.45 22.48 0.21 -4.68 16 21 C -0.10 -3.19 9.36 22.24 0.21 -2.98 16 22 C -0.10 -2.65 5.88 -19.82 -0.12 -2.77 16 23 C 0.12 2.09 6.22 71.24 0.44 2.53 16 24 O -0.59 -10.29 12.13 -148.98 -1.81 -12.10 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.83 6.77 -2.39 -0.02 0.82 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.29 8.05 -2.39 -0.02 1.27 16 29 H 0.09 1.17 6.82 -2.39 -0.02 1.15 16 30 H 0.13 3.99 6.29 -2.91 -0.02 3.97 16 31 H 0.13 4.93 6.32 -2.91 -0.02 4.91 16 32 H 0.14 6.22 8.06 -2.91 -0.02 6.20 16 33 H 0.28 14.02 8.29 -92.70 -0.77 13.25 16 34 H 0.11 5.32 6.33 -2.91 -0.02 5.30 16 35 H 0.11 4.35 6.29 -2.91 -0.02 4.33 16 36 H 0.14 3.94 6.99 -2.91 -0.02 3.92 16 37 H 0.08 1.00 7.48 -2.39 -0.02 0.99 16 38 H 0.08 1.02 6.75 -2.39 -0.02 1.01 16 39 H 0.40 2.61 9.12 -74.06 -0.68 1.94 16 Total: -1.00 -71.93 323.44 3.21 -68.72 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.41 Total: 27.60 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 3.81 Total: -51.62 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.24 Total: -73.97 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.81 Total: -12.10 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -71.93 3.21 -68.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244648415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.560 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds