Wall clock time and date at job start Tue Mar 31 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37926 * 119.91558 * 2 1 4 4 C 1.39683 * 119.84011 * 179.72459 * 3 2 1 5 5 C 1.47821 * 120.14813 * 180.29912 * 4 3 2 6 6 N 1.32577 * 119.99145 * 316.10332 * 5 4 3 7 7 C 1.31739 * 121.72326 * 179.75746 * 6 5 4 8 8 C 1.38875 * 121.50225 * 0.52930 * 7 6 5 9 9 C 1.36878 * 119.79806 * 359.74312 * 8 7 6 10 10 C 1.41128 * 118.39820 * 359.97438 * 9 8 7 11 11 C 1.40880 * 120.71969 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99886 * 151.59731 * 11 10 9 13 13 C 1.40073 * 120.00202 * 331.59390 * 11 10 9 14 14 N 1.30769 * 119.99704 * 348.30040 * 13 11 10 15 15 Si 1.86799 * 119.99819 * 168.29897 * 13 11 10 16 16 H 1.48506 * 109.47195 * 60.00663 * 15 13 11 17 17 H 1.48506 * 109.47026 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47285 * 300.00215 * 15 13 11 19 19 C 1.39673 * 119.69880 * 0.26835 * 4 3 2 20 20 C 1.37917 * 119.84568 * 0.02562 * 19 4 3 21 21 C 1.50706 * 119.92372 * 179.97438 * 20 19 4 22 22 C 1.38398 * 120.15590 * 359.97074 * 20 19 4 23 23 C 1.50696 * 119.85091 * 180.02562 * 22 20 19 24 24 O 1.42908 * 109.46938 * 89.99987 * 23 22 20 25 25 H 1.08994 * 109.47235 * 90.00827 * 1 2 3 26 26 H 1.09004 * 109.46580 * 209.99866 * 1 2 3 27 27 H 1.08994 * 109.47676 * 329.99985 * 1 2 3 28 28 H 1.07992 * 120.08202 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.24842 * 180.27768 * 7 6 5 30 30 H 1.07997 * 120.09913 * 179.72241 * 8 7 6 31 31 H 1.07999 * 120.80404 * 180.02562 * 9 8 7 32 32 H 0.97005 * 119.99272 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.07457 * 180.02562 * 19 4 3 34 34 H 1.09003 * 109.46630 * 89.99721 * 21 20 19 35 35 H 1.09000 * 109.46579 * 209.99387 * 21 20 19 36 36 H 1.08999 * 109.47095 * 329.99480 * 21 20 19 37 37 H 1.08999 * 109.47184 * 209.99456 * 23 22 20 38 38 H 1.08996 * 109.47080 * 330.00404 * 23 22 20 39 39 H 0.96696 * 113.99659 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1955 0.0000 4 6 3.5917 1.1937 0.0058 5 6 4.3357 2.4709 0.0125 6 7 3.9577 3.4623 -0.7824 7 6 4.5930 4.6162 -0.8007 8 6 5.6994 4.8484 0.0059 9 6 6.1463 3.8652 0.8469 10 6 5.4575 2.6336 0.8657 11 6 5.8750 1.5884 1.7129 12 1 5.1565 0.8692 2.0776 13 6 7.2220 1.4817 2.0821 14 7 8.1266 2.2007 1.4700 15 14 7.7259 0.3125 3.4490 16 1 7.3443 -1.0744 3.0798 17 1 9.1960 0.3859 3.6464 18 1 7.0382 0.6967 4.7077 19 6 4.2821 -0.0205 0.0059 20 6 3.5815 -1.2085 -0.0002 21 6 4.3247 -2.5195 -0.0007 22 6 2.1976 -1.1994 -0.0059 23 6 1.4390 -2.5015 -0.0121 24 8 1.1936 -2.9162 1.3333 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6549 2.1307 -0.0004 29 1 4.2479 5.3982 -1.4609 30 1 6.2059 5.8015 -0.0306 31 1 7.0049 4.0284 1.4815 32 1 9.0594 2.1271 1.7260 33 1 5.3621 -0.0290 0.0108 34 1 4.4995 -2.8383 1.0269 35 1 3.7316 -3.2730 -0.5190 36 1 5.2802 -2.3954 -0.5103 37 1 0.4892 -2.3662 -0.5294 38 1 2.0272 -3.2622 -0.5252 39 1 0.7077 -3.7490 1.4057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244681304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:12 Heat of formation + Delta-G solvation = -14.945896 kcal Electronic energy + Delta-G solvation = -21824.129893 eV Core-core repulsion = 18695.404838 eV Total energy + Delta-G solvation = -3128.725055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.43918 -38.18952 -36.27667 -34.20533 -33.08197 -32.59490 -30.62596 -29.39788 -27.62029 -26.27776 -25.73179 -24.80823 -21.86970 -21.48904 -20.04030 -19.31626 -17.43358 -17.32148 -15.93080 -15.69585 -15.47233 -14.94476 -14.39391 -13.95892 -13.51892 -13.41055 -13.24624 -12.89447 -12.83604 -12.44051 -12.37471 -12.25323 -12.18732 -11.69173 -11.55181 -11.43141 -11.34231 -11.08838 -10.85187 -10.69561 -10.40047 -10.38052 -9.79449 -9.76297 -9.43631 -8.51048 -8.10319 -8.04358 -7.81439 -7.32038 -6.89981 -4.54503 1.74996 2.12836 2.62383 2.94145 2.98096 3.02387 3.15936 3.80534 4.27542 4.54058 4.78887 5.15694 5.21465 5.36349 5.45257 5.52514 5.53175 5.64624 5.78973 5.87274 5.89837 6.05412 6.15174 6.17904 6.24387 6.27960 6.37555 6.40303 6.64822 6.77417 6.81585 6.88863 7.01666 7.03549 7.25158 7.29295 7.49786 7.64626 7.70946 7.74209 7.85984 7.89351 8.36113 8.57633 8.64647 9.54760 9.97958 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.006897 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.108858 B = 4058.894142 C = 5630.632354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.075 4.075 3 C -0.118 4.118 4 C 0.039 3.961 5 C 0.011 3.989 6 N -0.452 5.452 7 C -0.032 4.032 8 C -0.150 4.150 9 C -0.127 4.127 10 C 0.086 3.914 11 C -0.438 4.438 12 H 0.089 0.911 13 C 0.074 3.926 14 N -0.790 5.790 15 Si 0.910 3.090 16 H -0.260 1.260 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.101 4.101 20 C -0.074 4.074 21 C -0.110 4.110 22 C -0.119 4.119 23 C 0.120 3.880 24 O -0.564 6.564 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.285 0.715 33 H 0.135 0.865 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -7.930 -0.957 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.137 4.137 4 C 0.038 3.962 5 C -0.127 4.127 6 N -0.160 5.160 7 C -0.193 4.193 8 C -0.170 4.170 9 C -0.153 4.153 10 C 0.081 3.919 11 C -0.467 4.467 12 H 0.107 0.893 13 C -0.145 4.145 14 N -0.414 5.414 15 Si 0.734 3.266 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.167 4.167 22 C -0.120 4.120 23 C 0.043 3.957 24 O -0.369 6.369 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.041 -7.443 -1.385 10.339 hybrid contribution 0.959 -0.596 0.970 1.489 sum -6.082 -8.039 -0.415 10.089 Atomic orbital electron populations 1.20759 0.92097 1.02379 1.01436 1.19490 0.95201 0.92500 1.00283 1.21069 0.93628 0.96733 1.02225 1.18441 0.91783 0.91664 0.94342 1.19525 1.00381 0.92700 1.00057 1.67026 1.29362 1.00100 1.19503 1.21669 0.97789 0.95241 1.04604 1.21443 0.97864 0.98956 0.98780 1.21432 1.01504 0.92102 1.00300 1.18341 0.90278 0.92824 0.90430 1.19606 0.93501 1.10068 1.23552 0.89311 1.25996 0.96437 0.96076 0.95999 1.69738 1.02917 1.34119 1.34640 0.86304 0.77888 0.81079 0.81377 1.18424 1.20143 1.18567 1.21305 1.00758 0.90395 0.99558 1.19540 0.92656 0.95161 1.00065 1.20782 0.99548 0.94259 1.02073 1.19076 0.92801 0.92901 1.07195 1.20973 0.97453 0.93802 0.83463 1.86664 1.79350 1.43831 1.27014 0.91916 0.91724 0.91899 0.86474 0.86154 0.88299 0.85472 0.90383 0.84744 0.91405 0.92173 0.91821 0.93394 0.93079 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.17 36.01 0.33 -1.22 16 2 C -0.07 -1.35 5.87 -104.68 -0.61 -1.96 16 3 C -0.12 -2.45 9.31 -39.16 -0.36 -2.81 16 4 C 0.04 0.89 5.26 -104.90 -0.55 0.34 16 5 C 0.01 0.29 6.43 -82.24 -0.53 -0.24 16 6 N -0.45 -11.29 10.15 -9.17 -0.09 -11.38 16 7 C -0.03 -0.74 11.16 -17.36 -0.19 -0.93 16 8 C -0.15 -3.45 10.03 -39.84 -0.40 -3.85 16 9 C -0.13 -3.22 8.72 -38.98 -0.34 -3.56 16 10 C 0.09 2.24 5.54 -106.41 -0.59 1.65 16 11 C -0.44 -11.06 6.72 -37.89 -0.25 -11.32 16 12 H 0.09 2.24 6.47 -52.49 -0.34 1.90 16 13 C 0.07 1.76 5.26 -17.32 -0.09 1.67 16 14 N -0.79 -19.28 10.91 55.55 0.61 -18.67 16 15 Si 0.91 18.07 29.58 -169.99 -5.03 13.04 16 16 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 19 C -0.10 -2.19 7.49 -39.16 -0.29 -2.49 16 20 C -0.07 -1.39 5.87 -104.68 -0.61 -2.00 16 21 C -0.11 -1.68 9.60 36.01 0.35 -1.34 16 22 C -0.12 -2.09 5.52 -104.50 -0.58 -2.67 16 23 C 0.12 1.61 5.93 36.00 0.21 1.82 16 24 O -0.56 -7.57 13.61 -35.23 -0.48 -8.05 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.84 6.68 -51.93 -0.35 0.49 16 27 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.13 3.23 6.33 -52.49 -0.33 2.90 16 32 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 33 H 0.13 3.06 6.74 -52.49 -0.35 2.71 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.77 5.93 -51.93 -0.31 0.46 16 36 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.05 0.56 6.70 -51.93 -0.35 0.21 16 38 H 0.05 0.60 5.93 -51.93 -0.31 0.30 16 39 H 0.37 2.89 9.12 45.56 0.42 3.31 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -29.19 322.28 -8.67 -37.86 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -4.01 Total: 11.26 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -4.52 Total: -28.92 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.51 Total: -30.06 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.48 Total: -8.05 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.19 -8.67 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244681304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.918 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds