Wall clock time and date at job start Tue Mar 31 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38001 * 119.94115 * 2 1 4 4 C 1.39387 * 119.87382 * 179.97438 * 3 2 1 5 5 C 1.48310 * 120.12264 * 179.97438 * 4 3 2 6 6 C 1.39905 * 119.60349 * 179.97438 * 5 4 3 7 7 C 1.38696 * 119.46013 * 179.97438 * 6 5 4 8 8 C 1.38294 * 118.68974 * 0.28633 * 7 6 5 9 9 C 1.40687 * 119.18354 * 359.45244 * 8 7 6 10 10 C 1.41386 * 119.76263 * 180.27504 * 9 8 7 11 11 H 1.07998 * 119.99712 * 0.27585 * 10 9 8 12 12 C 1.40017 * 119.99878 * 180.27304 * 10 9 8 13 13 N 1.30752 * 119.99854 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00024 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47111 * 90.00065 * 14 12 10 16 16 H 1.48494 * 109.47235 * 210.00410 * 14 12 10 17 17 H 1.48501 * 109.47257 * 330.00355 * 14 12 10 18 18 N 1.32217 * 119.61079 * 359.97438 * 5 4 3 19 19 C 1.39387 * 119.74759 * 0.24301 * 4 3 2 20 20 C 1.38003 * 119.87196 * 359.49914 * 19 4 3 21 21 C 1.50699 * 119.93319 * 180.26991 * 20 19 4 22 22 C 1.38333 * 119.93108 * 179.97438 * 2 1 3 23 23 C 1.50702 * 119.87984 * 0.04535 * 22 2 1 24 24 O 1.42903 * 109.46821 * 89.99427 * 23 22 2 25 25 H 1.08994 * 109.46805 * 90.00015 * 1 2 3 26 26 H 1.09000 * 109.47233 * 210.00265 * 1 2 3 27 27 H 1.09001 * 109.46499 * 330.00110 * 1 2 3 28 28 H 1.08006 * 120.06042 * 359.95295 * 3 2 1 29 29 H 1.07991 * 120.26944 * 359.96141 * 6 5 4 30 30 H 1.08002 * 120.65058 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.40182 * 179.69925 * 8 7 6 32 32 H 0.96994 * 119.99513 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.05666 * 179.72609 * 19 4 3 34 34 H 1.09008 * 109.47443 * 270.23041 * 21 20 19 35 35 H 1.08998 * 109.47491 * 30.23338 * 21 20 19 36 36 H 1.09000 * 109.46929 * 150.23391 * 21 20 19 37 37 H 1.08994 * 109.47622 * 209.99801 * 23 22 2 38 38 H 1.09000 * 109.46803 * 329.99840 * 23 22 2 39 39 H 0.96698 * 113.99754 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1958 0.0000 4 6 3.5897 1.1942 0.0005 5 6 4.3355 2.4761 0.0000 6 6 5.7345 2.4618 0.0011 7 6 6.4289 3.6624 0.0000 8 6 5.7112 4.8445 0.0039 9 6 4.3053 4.7935 -0.0029 10 6 3.5594 5.9946 -0.0049 11 1 4.0691 6.9467 -0.0057 12 6 2.1600 5.9496 -0.0058 13 7 1.5430 4.7968 -0.0044 14 14 1.1745 7.5364 -0.0092 15 1 0.9144 7.9546 -1.4101 16 1 -0.1171 7.3184 0.6903 17 1 1.9428 8.5978 0.6896 18 7 3.6704 3.6189 -0.0016 19 6 4.2799 -0.0168 -0.0041 20 6 3.5806 -1.2065 0.0014 21 6 4.3254 -2.5166 0.0025 22 6 2.1973 -1.1988 0.0005 23 6 1.4395 -2.5015 0.0001 24 8 1.2008 -2.9131 -1.3474 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 1.6558 2.1312 -0.0008 29 1 6.2693 1.5236 0.0029 30 1 7.5089 3.6738 0.0004 31 1 6.2238 5.7951 0.0081 32 1 0.5735 4.7656 -0.0047 33 1 5.3599 -0.0239 -0.0081 34 1 4.5054 -2.8332 -1.0249 35 1 5.2785 -2.3923 0.5167 36 1 3.7311 -3.2719 0.5167 37 1 2.0256 -3.2630 0.5143 38 1 0.4872 -2.3679 0.5133 39 1 0.7164 -3.7466 -1.4240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244685443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:18 Heat of formation + Delta-G solvation = -2.346400 kcal Electronic energy + Delta-G solvation = -21478.383898 eV Core-core repulsion = 18350.205198 eV Total energy + Delta-G solvation = -3128.178700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.53380 -38.05329 -36.38392 -33.80180 -33.22116 -32.51305 -30.51018 -29.44555 -27.70423 -26.50234 -25.75201 -24.82224 -21.95021 -21.48567 -20.01884 -19.32805 -17.46170 -17.40377 -16.00339 -15.70471 -15.27396 -14.55650 -14.42655 -14.07013 -13.69701 -13.33594 -13.20669 -12.99842 -12.88657 -12.44264 -12.43432 -12.38378 -12.25261 -11.77569 -11.57654 -11.33292 -11.07282 -10.96355 -10.77797 -10.61984 -10.41517 -10.29780 -9.91644 -9.81112 -9.44361 -8.69573 -8.05859 -7.97643 -7.63481 -7.19091 -6.44465 -4.54822 1.50420 1.98335 2.78920 3.03500 3.07796 3.10491 3.19420 3.92875 4.19221 4.64769 4.83750 5.01540 5.08697 5.20292 5.33339 5.38969 5.47678 5.67202 5.80615 5.83209 5.91268 5.96315 6.02011 6.02659 6.10027 6.21186 6.31488 6.47262 6.60089 6.61179 6.74164 6.84341 6.93656 7.07460 7.19769 7.31915 7.35790 7.57366 7.62625 7.66824 7.71808 8.00621 8.19990 8.63775 8.88738 10.02740 10.28032 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.005180 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.490229 B = 5403.615227 C = 6850.089179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.087 4.087 4 C -0.004 4.004 5 C 0.173 3.827 6 C -0.299 4.299 7 C -0.060 4.060 8 C -0.271 4.271 9 C 0.256 3.744 10 C -0.432 4.432 11 H 0.084 0.916 12 C 0.071 3.929 13 N -0.718 5.718 14 Si 0.908 3.092 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.262 1.262 18 N -0.466 5.466 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.109 4.109 22 C -0.109 4.109 23 C 0.116 3.884 24 O -0.563 6.563 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.156 0.844 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.272 0.728 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -11.994 0.945 12.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.005 4.005 5 C 0.029 3.971 6 C -0.322 4.322 7 C -0.084 4.084 8 C -0.294 4.294 9 C 0.131 3.869 10 C -0.463 4.463 11 H 0.102 0.898 12 C -0.154 4.154 13 N -0.339 5.339 14 Si 0.732 3.268 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.186 1.186 18 N -0.179 5.179 19 C -0.139 4.139 20 C -0.078 4.078 21 C -0.166 4.166 22 C -0.109 4.109 23 C 0.039 3.961 24 O -0.368 6.368 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.070 -11.469 0.830 11.902 hybrid contribution 0.376 0.265 0.120 0.475 sum -2.695 -11.204 0.950 11.563 Atomic orbital electron populations 1.20789 0.91735 1.02046 1.02113 1.19700 0.95722 0.92484 0.99830 1.21614 0.93853 0.98418 0.96706 1.18859 0.93084 0.91563 0.96984 1.19748 0.89517 0.92127 0.95681 1.21224 0.94473 0.96947 1.19576 1.20791 0.97565 0.92960 0.97122 1.21801 0.95691 0.96672 1.15251 1.18524 0.88484 0.91410 0.88523 1.19594 0.90974 0.92576 1.43154 0.89810 1.26029 0.98548 0.97351 0.93461 1.70076 1.09424 1.25453 1.28977 0.86326 0.79149 0.82131 0.79211 1.19432 1.20114 1.18604 1.68712 1.36737 0.95849 1.16586 1.21067 0.99637 0.91042 1.02158 1.19466 0.92801 0.94929 1.00642 1.20773 0.99460 0.94323 1.02024 1.19143 0.92799 0.93250 1.05719 1.21026 0.97801 0.93624 0.83605 1.86645 1.79509 1.43951 1.26711 0.91379 0.92172 0.91438 0.82690 0.88421 0.88462 0.88248 0.91671 0.85966 0.91425 0.91940 0.91940 0.93070 0.92926 0.78277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.60 36.01 0.35 -1.29 16 2 C -0.08 -1.40 5.87 -104.67 -0.61 -2.02 16 3 C -0.09 -1.88 9.22 -39.24 -0.36 -2.25 16 4 C 0.00 -0.09 5.88 -104.90 -0.62 -0.71 16 5 C 0.17 4.34 6.74 -82.93 -0.56 3.79 16 6 C -0.30 -6.90 9.48 -38.79 -0.37 -7.27 16 7 C -0.06 -1.37 10.15 -39.39 -0.40 -1.77 16 8 C -0.27 -6.72 9.83 -38.64 -0.38 -7.10 16 9 C 0.26 7.03 6.55 -85.01 -0.56 6.47 16 10 C -0.43 -11.48 9.14 -37.72 -0.34 -11.82 16 11 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 12 C 0.07 1.78 5.50 -17.35 -0.10 1.69 16 13 N -0.72 -18.54 11.11 55.55 0.62 -17.92 16 14 Si 0.91 18.43 29.56 -169.99 -5.02 13.41 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 17 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 18 N -0.47 -12.81 6.92 -7.68 -0.05 -12.87 16 19 C -0.12 -2.28 9.07 -39.24 -0.36 -2.63 16 20 C -0.08 -1.31 5.87 -104.67 -0.61 -1.92 16 21 C -0.11 -1.39 9.59 36.00 0.35 -1.05 16 22 C -0.11 -1.81 5.51 -104.55 -0.58 -2.38 16 23 C 0.12 1.46 6.35 36.01 0.23 1.69 16 24 O -0.56 -7.10 13.64 -35.23 -0.48 -7.58 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.74 5.93 -51.93 -0.31 0.44 16 27 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.16 3.67 7.18 -52.48 -0.38 3.29 16 29 H 0.10 1.98 6.17 -52.49 -0.32 1.65 16 30 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 32 H 0.27 6.36 8.29 -40.82 -0.34 6.03 16 33 H 0.12 2.13 6.17 -52.49 -0.32 1.81 16 34 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.06 0.68 5.93 -51.93 -0.31 0.37 16 37 H 0.05 0.55 5.93 -51.93 -0.31 0.24 16 38 H 0.05 0.59 5.93 -51.93 -0.31 0.28 16 39 H 0.37 2.62 9.12 45.56 0.42 3.03 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -30.76 323.97 -8.90 -39.66 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.92 Total: 8.99 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -4.92 Total: -28.57 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.56 Total: -30.79 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.48 Total: -7.58 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.76 -8.90 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244685443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.310 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds