Wall clock time and date at job start Tue Mar 31 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38016 * 119.93751 * 2 1 4 4 C 1.39359 * 119.87476 * 180.24816 * 3 2 1 5 5 C 1.48358 * 120.12013 * 179.76931 * 4 3 2 6 6 C 1.38903 * 119.61624 * 359.70487 * 5 4 3 7 7 C 1.40847 * 118.76378 * 179.77585 * 6 5 4 8 8 C 1.41531 * 120.98841 * 180.21802 * 7 6 5 9 9 H 1.07993 * 120.00036 * 203.56873 * 8 7 6 10 10 C 1.40048 * 119.99870 * 23.56712 * 8 7 6 11 11 N 1.30740 * 119.99843 * 17.00858 * 10 8 7 12 12 Si 1.86791 * 120.00270 * 197.01034 * 10 8 7 13 13 H 1.48499 * 109.47213 * 59.99641 * 12 10 8 14 14 H 1.48498 * 109.47677 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46976 * 300.00192 * 12 10 8 16 16 C 1.41139 * 118.02589 * 0.48792 * 7 6 5 17 17 C 1.37740 * 119.07190 * 359.75469 * 16 7 6 18 18 N 1.31918 * 121.15953 * 359.97438 * 17 16 7 19 19 C 1.39345 * 119.75454 * 359.75181 * 4 3 2 20 20 C 1.38013 * 119.87767 * 359.97438 * 19 4 3 21 21 C 1.50706 * 119.93980 * 180.02562 * 20 19 4 22 22 C 1.38323 * 119.94008 * 179.72407 * 2 1 3 23 23 C 1.50698 * 119.87594 * 0.02562 * 22 2 1 24 24 O 1.42907 * 109.47141 * 269.72537 * 23 22 2 25 25 H 1.09008 * 109.47225 * 270.27315 * 1 2 3 26 26 H 1.08996 * 109.47407 * 30.27717 * 1 2 3 27 27 H 1.09001 * 109.46913 * 150.27485 * 1 2 3 28 28 H 1.08001 * 120.06385 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.61697 * 0.02562 * 6 5 4 30 30 H 0.96995 * 119.99997 * 179.97438 * 11 10 8 31 31 H 1.07995 * 120.46612 * 179.72624 * 16 7 6 32 32 H 1.08004 * 119.42312 * 180.02562 * 17 16 7 33 33 H 1.08001 * 120.06512 * 179.97438 * 19 4 3 34 34 H 1.08999 * 109.46899 * 269.98261 * 21 20 19 35 35 H 1.09007 * 109.47041 * 29.98089 * 21 20 19 36 36 H 1.09001 * 109.47304 * 149.98114 * 21 20 19 37 37 H 1.09004 * 109.47266 * 149.72952 * 23 22 2 38 38 H 1.09000 * 109.47542 * 29.72883 * 23 22 2 39 39 H 0.96697 * 113.99546 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1960 0.0000 4 6 3.5893 1.1945 -0.0052 5 6 4.3352 2.4769 -0.0104 6 6 3.6364 3.6774 -0.0163 7 6 4.3626 4.8843 -0.0163 8 6 3.6986 6.1342 -0.0175 9 1 4.2026 7.0130 -0.3915 10 6 2.3879 6.2313 0.4663 11 7 1.8944 5.2781 1.2128 12 14 1.3449 7.7225 0.0451 13 1 1.1913 7.8189 -1.4288 14 1 0.0071 7.5848 0.6748 15 1 2.0074 8.9499 0.5550 16 6 5.7720 4.8102 -0.0210 17 6 6.3772 3.5729 -0.0201 18 7 5.6631 2.4637 -0.0145 19 6 4.2796 -0.0160 -0.0052 20 6 3.5806 -1.2060 0.0005 21 6 4.3256 -2.5160 0.0012 22 6 2.1973 -1.1986 0.0058 23 6 1.4397 -2.5013 0.0115 24 8 1.2052 -2.9101 1.3606 25 1 -0.3634 0.0049 1.0277 26 1 -0.3634 0.8874 -0.5181 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6558 2.1313 0.0004 29 1 2.5564 3.6852 -0.0166 30 1 0.9868 5.3455 1.5482 31 1 6.3677 5.7110 -0.0256 32 1 7.4554 3.5096 -0.0233 33 1 5.3595 -0.0230 -0.0097 34 1 4.5011 -2.8346 -1.0263 35 1 5.2810 -2.3904 0.5108 36 1 3.7338 -3.2704 0.5195 37 1 2.0244 -3.2640 -0.5029 38 1 0.4858 -2.3691 -0.4991 39 1 0.7205 -3.7430 1.4405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244686187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:20 Heat of formation + Delta-G solvation = -15.946001 kcal Electronic energy + Delta-G solvation = -21359.013347 eV Core-core repulsion = 18230.244925 eV Total energy + Delta-G solvation = -3128.768423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.61063 -38.18326 -36.42581 -34.21846 -33.28455 -32.70103 -30.64104 -29.06023 -27.75479 -26.57022 -25.75410 -25.05168 -22.02469 -21.59750 -20.08667 -19.48029 -17.46601 -17.39081 -16.07157 -15.71092 -15.34171 -14.66781 -14.32805 -14.23105 -13.76187 -13.38182 -13.28203 -13.04186 -12.97247 -12.72658 -12.51394 -12.42195 -12.36767 -11.95489 -11.62341 -11.51078 -11.26026 -11.08603 -10.93265 -10.61683 -10.44411 -10.33014 -9.94921 -9.82349 -9.47495 -8.68139 -8.09048 -8.05989 -8.00442 -7.16072 -6.88691 -4.64748 1.45252 1.90579 2.75163 2.84918 2.98763 3.01015 3.21500 3.81026 4.10281 4.57780 4.71666 5.00291 5.05905 5.15128 5.30533 5.37068 5.39711 5.64609 5.65248 5.69656 5.79048 5.90142 5.98309 6.02474 6.11175 6.11886 6.18487 6.51621 6.54327 6.68494 6.81217 6.82019 6.98574 7.03015 7.08492 7.23603 7.32274 7.44049 7.53167 7.61987 7.80648 8.05395 8.38388 8.66824 8.68553 9.53522 10.01136 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.004934 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.289460 B = 5674.061602 C = 7030.639512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.115 4.115 4 C 0.004 3.996 5 C 0.133 3.867 6 C -0.187 4.187 7 C 0.124 3.876 8 C -0.455 4.455 9 H 0.082 0.918 10 C 0.078 3.922 11 N -0.784 5.784 12 Si 0.912 3.088 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.264 1.264 16 C -0.273 4.273 17 C 0.104 3.896 18 N -0.564 5.564 19 C -0.103 4.103 20 C -0.075 4.075 21 C -0.112 4.112 22 C -0.111 4.111 23 C 0.118 3.882 24 O -0.564 6.564 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.285 0.715 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -11.456 -2.527 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.070 4.070 3 C -0.133 4.133 4 C 0.003 3.997 5 C 0.003 3.997 6 C -0.209 4.209 7 C 0.116 3.884 8 C -0.486 4.486 9 H 0.101 0.899 10 C -0.142 4.142 11 N -0.409 5.409 12 Si 0.736 3.264 13 H -0.186 1.186 14 H -0.201 1.201 15 H -0.188 1.188 16 C -0.296 4.296 17 C -0.052 4.052 18 N -0.279 5.279 19 C -0.121 4.121 20 C -0.075 4.075 21 C -0.168 4.168 22 C -0.112 4.112 23 C 0.041 3.959 24 O -0.369 6.369 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.727 -11.787 -2.263 12.568 hybrid contribution -1.140 1.212 -0.165 1.672 sum -4.866 -10.575 -2.428 11.891 Atomic orbital electron populations 1.20801 0.91647 1.02070 1.02283 1.19544 0.95577 0.92297 0.99572 1.21210 0.93522 0.97701 1.00892 1.18798 0.92244 0.92271 0.96387 1.19274 0.89745 0.91093 0.99577 1.22295 1.00991 0.91202 1.06461 1.17780 0.90875 0.93312 0.86393 1.19591 0.97488 0.95074 1.36413 0.89949 1.25988 0.98100 0.97881 0.92253 1.69756 1.16487 1.32516 1.22183 0.86293 0.78645 0.81352 0.80101 1.18622 1.20104 1.18801 1.21912 0.95395 0.97159 1.15175 1.21816 0.97820 0.88479 0.97092 1.67248 1.06736 1.31410 1.22522 1.21131 1.00456 0.90488 1.00030 1.19616 0.92759 0.95256 0.99909 1.20784 0.99961 0.94431 1.01645 1.19140 0.92825 0.93201 1.05992 1.20986 0.97767 0.93564 0.83550 1.86650 1.79498 1.44082 1.26626 0.91188 0.91656 0.91930 0.85109 0.84970 0.90377 0.88029 0.86004 0.85051 0.91715 0.91594 0.91592 0.93153 0.92897 0.78214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.60 36.00 0.35 -1.19 16 2 C -0.07 -1.21 5.87 -104.67 -0.61 -1.82 16 3 C -0.11 -2.31 9.06 -39.25 -0.36 -2.67 16 4 C 0.00 0.09 5.88 -104.90 -0.62 -0.53 16 5 C 0.13 3.31 6.73 -83.04 -0.56 2.75 16 6 C -0.19 -4.88 8.14 -38.35 -0.31 -5.19 16 7 C 0.12 3.29 5.61 -106.56 -0.60 2.70 16 8 C -0.45 -11.73 9.12 -37.65 -0.34 -12.08 16 9 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 10 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 11 N -0.78 -19.56 10.91 55.55 0.61 -18.95 16 12 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 13 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 14 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 15 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 16 C -0.27 -6.68 9.90 -38.66 -0.38 -7.07 16 17 C 0.10 2.42 11.15 -17.70 -0.20 2.22 16 18 N -0.56 -13.86 9.40 -9.94 -0.09 -13.95 16 19 C -0.10 -2.02 9.22 -39.25 -0.36 -2.39 16 20 C -0.08 -1.28 5.88 -104.67 -0.61 -1.89 16 21 C -0.11 -1.46 9.18 36.01 0.33 -1.13 16 22 C -0.11 -1.81 5.51 -104.56 -0.58 -2.39 16 23 C 0.12 1.45 5.94 36.00 0.21 1.66 16 24 O -0.56 -6.97 13.62 -35.23 -0.48 -7.45 16 25 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 26 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.06 0.72 5.93 -51.93 -0.31 0.41 16 28 H 0.13 2.70 6.18 -52.49 -0.32 2.38 16 29 H 0.13 3.44 4.31 -52.48 -0.23 3.21 16 30 H 0.29 6.45 8.29 -40.82 -0.34 6.11 16 31 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 33 H 0.13 2.59 7.53 -52.49 -0.40 2.20 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.83 8.08 -51.92 -0.42 0.41 16 36 H 0.07 0.79 6.67 -51.93 -0.35 0.44 16 37 H 0.05 0.53 6.69 -51.93 -0.35 0.18 16 38 H 0.05 0.56 5.92 -51.93 -0.31 0.25 16 39 H 0.37 2.54 9.12 45.56 0.42 2.95 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -30.05 323.94 -8.77 -38.82 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -3.92 Total: 10.96 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -4.73 Total: -27.22 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.51 Total: -32.90 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.48 Total: -7.45 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.05 -8.77 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244686187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.870 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds