Wall clock time and date at job start Tue Mar 31 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38008 * 120.06257 * 2 1 4 4 C 1.38323 * 120.12679 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.88124 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46994 * 89.99955 * 5 4 3 7 7 C 1.38321 * 120.24395 * 0.27541 * 4 3 2 8 8 C 1.38020 * 120.12220 * 359.45430 * 7 4 3 9 9 C 1.50699 * 120.06397 * 180.27275 * 8 7 4 10 10 C 1.39349 * 119.87256 * 0.53842 * 8 7 4 11 11 C 1.48363 * 120.12117 * 179.70823 * 10 8 7 12 12 C 1.38905 * 119.61364 * 304.52853 * 11 10 8 13 13 C 1.40850 * 118.76262 * 179.75866 * 12 11 10 14 14 C 1.41532 * 120.98805 * 180.26358 * 13 12 11 15 15 H 1.08000 * 119.99445 * 337.53741 * 14 13 12 16 16 C 1.40043 * 120.00042 * 157.53639 * 14 13 12 17 17 N 1.30729 * 120.00113 * 343.36145 * 16 14 13 18 18 Si 1.86799 * 119.99642 * 163.36197 * 16 14 13 19 19 H 1.48492 * 109.47446 * 90.00252 * 18 16 14 20 20 H 1.48508 * 109.46843 * 209.99786 * 18 16 14 21 21 H 1.48497 * 109.47254 * 329.99374 * 18 16 14 22 22 C 1.41136 * 118.02650 * 0.50395 * 13 12 11 23 23 C 1.37745 * 119.07439 * 359.75681 * 22 13 12 24 24 N 1.31922 * 121.15514 * 359.97438 * 23 22 13 25 25 H 1.09005 * 109.47329 * 95.85137 * 1 2 3 26 26 H 1.09002 * 109.47059 * 215.85331 * 1 2 3 27 27 H 1.09001 * 109.47470 * 335.84731 * 1 2 3 28 28 H 1.08010 * 119.93649 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.46797 * 330.00425 * 5 4 3 30 30 H 1.08994 * 109.47470 * 210.00624 * 5 4 3 31 31 H 0.96701 * 114.00013 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.93854 * 179.70153 * 7 4 3 33 33 H 1.08992 * 109.47205 * 265.94378 * 9 8 7 34 34 H 1.09006 * 109.47041 * 25.94775 * 9 8 7 35 35 H 1.08997 * 109.47188 * 145.94310 * 9 8 7 36 36 H 1.07996 * 120.61799 * 0.02634 * 12 11 10 37 37 H 0.97000 * 120.00130 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.46661 * 179.78068 * 22 13 12 39 39 H 1.07996 * 119.42708 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1944 0.0000 4 6 3.5816 1.1960 0.0005 5 6 4.3309 2.5035 -0.0001 6 8 4.5672 2.9176 1.3470 7 6 4.2796 0.0018 -0.0047 8 6 3.5985 -1.1986 0.0009 9 6 4.3604 -2.4988 0.0015 10 6 2.2051 -1.2060 0.0005 11 6 1.4674 -2.4933 0.0000 12 6 1.7203 -3.4289 -0.9950 13 6 1.0135 -4.6471 -0.9754 14 6 1.2380 -5.6359 -1.9628 15 1 1.6564 -5.3587 -2.9191 16 6 0.9177 -6.9735 -1.6997 17 7 0.7248 -7.3697 -0.4689 18 14 0.7661 -8.1918 -3.1077 19 1 2.0877 -8.8180 -3.3649 20 1 -0.2185 -9.2438 -2.7481 21 1 0.3083 -7.4822 -4.3292 22 6 0.0709 -4.8503 0.0553 23 6 -0.1161 -3.8615 0.9959 24 7 0.5691 -2.7352 0.9476 25 1 -0.3634 -0.1048 -1.0223 26 1 -0.3633 -0.8330 0.6019 27 1 -0.3634 0.9377 0.4205 28 1 1.6583 2.1298 0.0004 29 1 3.7395 3.2609 -0.5146 30 1 5.2838 2.3759 -0.5135 31 1 5.0468 3.7539 1.4230 32 1 5.3596 0.0088 -0.0091 33 1 4.4776 -2.8517 -1.0231 34 1 5.3431 -2.3440 0.4471 35 1 3.8117 -3.2413 0.5809 36 1 2.4485 -3.2279 -1.7668 37 1 0.5032 -8.2963 -0.2867 38 1 -0.4956 -5.7684 0.1060 39 1 -0.8361 -4.0109 1.7868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244688864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:28 Heat of formation + Delta-G solvation = -15.741870 kcal Electronic energy + Delta-G solvation = -21375.929911 eV Core-core repulsion = 18247.170341 eV Total energy + Delta-G solvation = -3128.759571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.65954 -38.04955 -36.62768 -34.23783 -33.18708 -32.52836 -30.70419 -29.27866 -27.14663 -26.41325 -25.94620 -25.44888 -21.71320 -21.37486 -20.28386 -19.80327 -17.55399 -17.45454 -15.87278 -15.73689 -15.26731 -14.66985 -14.46044 -14.23844 -13.95284 -13.61450 -13.32928 -12.98210 -12.68483 -12.56727 -12.51349 -12.24496 -12.06728 -11.97935 -11.53320 -11.26829 -11.20709 -11.13085 -10.93166 -10.66249 -10.59702 -10.31583 -10.10794 -9.80924 -9.47454 -8.43947 -8.15242 -8.08084 -7.93717 -7.32741 -6.89387 -4.64022 1.52647 1.79884 2.70946 2.76302 2.98999 3.03004 3.19139 3.81070 3.95475 4.53378 4.59186 4.97946 5.04335 5.21614 5.27102 5.36249 5.39516 5.59835 5.66440 5.85073 5.93130 6.01150 6.07581 6.16849 6.18172 6.29019 6.43063 6.58513 6.69682 6.75668 6.81735 6.85109 6.88404 6.97247 7.09500 7.18618 7.28800 7.40118 7.47781 7.55014 7.81899 8.05960 8.40972 8.68934 8.69883 9.54458 10.01399 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.004063 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.796204 B = 6890.607178 C = 7354.554308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.060 4.060 3 C -0.113 4.113 4 C -0.102 4.102 5 C 0.122 3.878 6 O -0.567 6.567 7 C -0.111 4.111 8 C -0.070 4.070 9 C -0.110 4.110 10 C -0.004 4.004 11 C 0.158 3.842 12 C -0.248 4.248 13 C 0.126 3.874 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.784 5.784 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.212 4.212 23 C 0.084 3.916 24 N -0.559 5.559 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.374 0.626 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.283 0.717 38 H 0.128 0.872 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 11.313 -1.167 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.060 4.060 3 C -0.131 4.131 4 C -0.102 4.102 5 C 0.045 3.955 6 O -0.372 6.372 7 C -0.129 4.129 8 C -0.071 4.071 9 C -0.167 4.167 10 C -0.005 4.005 11 C 0.024 3.976 12 C -0.271 4.271 13 C 0.118 3.882 14 C -0.485 4.485 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.409 5.409 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.234 4.234 23 C -0.068 4.068 24 N -0.274 5.274 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.134 0.866 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.221 0.779 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.146 0.854 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.945 11.160 -0.236 11.839 hybrid contribution 0.422 -0.828 -1.372 1.657 sum 4.367 10.332 -1.608 11.332 Atomic orbital electron populations 1.20945 0.91083 1.03416 1.02403 1.19898 0.96327 0.91702 0.98097 1.20726 0.93132 0.97232 1.02005 1.19431 0.93586 0.93616 1.03551 1.20946 0.97741 0.93370 0.83427 1.86629 1.79971 1.43822 1.26776 1.20683 0.99063 0.91199 1.01921 1.19916 0.92807 0.95284 0.99092 1.20813 0.98662 0.94476 1.02723 1.18587 0.91730 0.92068 0.98111 1.18995 0.94265 0.91680 0.92709 1.21795 1.05649 0.97314 1.02351 1.17751 0.88119 0.90860 0.91427 1.19598 1.36925 0.91244 1.00723 0.90099 1.25966 0.92101 0.99661 0.96449 1.69758 1.32622 1.18449 1.20117 0.86263 0.79089 0.79470 0.81703 1.19311 1.19924 1.18315 1.22287 1.01783 1.00691 0.98636 1.21983 0.97372 0.89907 0.97516 1.67331 1.10995 1.22909 1.26192 0.92105 0.88362 0.92714 0.86575 0.93129 0.93099 0.77927 0.86471 0.90960 0.92499 0.90713 0.88093 0.90541 0.85441 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.52 36.01 0.34 -1.78 16 2 C -0.06 -1.11 5.91 -104.29 -0.62 -1.73 16 3 C -0.11 -1.83 9.32 -39.63 -0.37 -2.20 16 4 C -0.10 -1.56 5.51 -104.56 -0.58 -2.14 16 5 C 0.12 1.41 7.17 36.01 0.26 1.67 16 6 O -0.57 -6.78 13.64 -35.23 -0.48 -7.26 16 7 C -0.11 -1.78 9.32 -39.63 -0.37 -2.15 16 8 C -0.07 -1.30 5.88 -104.29 -0.61 -1.91 16 9 C -0.11 -1.93 8.55 36.01 0.31 -1.62 16 10 C 0.00 -0.08 5.54 -104.90 -0.58 -0.66 16 11 C 0.16 3.64 4.76 -83.04 -0.40 3.25 16 12 C -0.25 -5.97 8.03 -38.35 -0.31 -6.28 16 13 C 0.13 3.27 5.62 -106.56 -0.60 2.67 16 14 C -0.45 -11.56 9.12 -37.65 -0.34 -11.90 16 15 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 16 C 0.08 1.87 5.21 -17.34 -0.09 1.78 16 17 N -0.78 -19.35 10.83 55.55 0.60 -18.75 16 18 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 C -0.21 -5.34 8.80 -38.66 -0.34 -5.68 16 23 C 0.08 1.98 11.15 -17.69 -0.20 1.78 16 24 N -0.56 -13.30 8.19 -9.94 -0.08 -13.38 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.10 1.94 5.74 -51.93 -0.30 1.64 16 27 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 28 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.37 2.37 9.12 45.56 0.42 2.78 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.07 1.22 7.55 -51.93 -0.39 0.83 16 34 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.07 1.50 6.93 -51.93 -0.36 1.14 16 36 H 0.10 2.32 7.27 -52.49 -0.38 1.94 16 37 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 38 H 0.13 3.27 6.10 -52.49 -0.32 2.95 16 39 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -29.22 326.47 -8.81 -38.03 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.25 Total: 10.56 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -4.49 Total: -26.92 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.52 Total: -32.13 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.48 Total: -7.26 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.22 -8.81 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244688864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.291 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds