Wall clock time and date at job start Tue Mar 31 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38008 * 120.06839 * 2 1 4 4 C 1.38326 * 120.12575 * 180.27164 * 3 2 1 5 5 C 1.50697 * 119.87294 * 179.71960 * 4 3 2 6 6 O 1.42902 * 109.47385 * 270.02259 * 5 4 3 7 7 C 1.38340 * 120.25524 * 359.74444 * 4 3 2 8 8 C 1.38003 * 120.12217 * 359.97438 * 7 4 3 9 9 C 1.50706 * 120.05878 * 180.02562 * 8 7 4 10 10 C 1.39381 * 119.87607 * 359.97438 * 8 7 4 11 11 C 1.48314 * 120.12646 * 179.97438 * 10 8 7 12 12 C 1.39900 * 119.60592 * 125.87377 * 11 10 8 13 13 C 1.38694 * 119.45907 * 179.97438 * 12 11 10 14 14 C 1.38280 * 118.69244 * 0.02562 * 13 12 11 15 15 C 1.40685 * 119.18762 * 359.97438 * 14 13 12 16 16 C 1.41383 * 119.76820 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99434 * 2.44751 * 16 15 14 18 18 C 1.40012 * 120.00122 * 182.71890 * 16 15 14 19 19 N 1.30746 * 120.00257 * 352.19248 * 18 16 15 20 20 Si 1.86797 * 120.00161 * 172.19252 * 18 16 15 21 21 H 1.48506 * 109.47162 * 89.99829 * 20 18 16 22 22 H 1.48494 * 109.47731 * 209.99957 * 20 18 16 23 23 H 1.48501 * 109.47223 * 330.00329 * 20 18 16 24 24 N 1.32222 * 119.60423 * 306.13099 * 11 10 8 25 25 H 1.08997 * 109.47484 * 270.23715 * 1 2 3 26 26 H 1.08998 * 109.46738 * 30.23781 * 1 2 3 27 27 H 1.08996 * 109.47194 * 150.23156 * 1 2 3 28 28 H 1.08001 * 119.93314 * 0.03649 * 3 2 1 29 29 H 1.08999 * 109.47162 * 30.02413 * 5 4 3 30 30 H 1.09002 * 109.47448 * 150.02016 * 5 4 3 31 31 H 0.96698 * 114.00189 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.93611 * 180.02562 * 7 4 3 33 33 H 1.08998 * 109.46857 * 264.13763 * 9 8 7 34 34 H 1.08996 * 109.47230 * 24.14444 * 9 8 7 35 35 H 1.08998 * 109.46538 * 144.14016 * 9 8 7 36 36 H 1.07999 * 120.26754 * 0.03021 * 12 11 10 37 37 H 1.07999 * 120.65036 * 180.02562 * 13 12 11 38 38 H 1.08005 * 120.40517 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00524 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1944 0.0000 4 6 3.5817 1.1958 -0.0057 5 6 4.3309 2.5033 -0.0120 6 8 4.5618 2.9135 -1.3613 7 6 4.2799 0.0015 -0.0060 8 6 3.5990 -1.1988 -0.0002 9 6 4.3611 -2.4990 0.0000 10 6 2.2052 -1.2064 0.0066 11 6 1.4678 -2.4932 0.0123 12 6 0.5105 -2.7369 1.0030 13 6 -0.1776 -3.9410 1.0051 14 6 0.1066 -4.8699 0.0210 15 6 1.0802 -4.5665 -0.9482 16 6 1.3809 -5.5074 -1.9597 17 1 0.8362 -6.4387 -2.0100 18 6 2.3886 -5.2344 -2.8926 19 7 2.9463 -4.0523 -2.9255 20 14 2.9364 -6.5591 -4.0903 21 1 2.1155 -6.4800 -5.3253 22 1 4.3669 -6.3559 -4.4329 23 1 2.7622 -7.8947 -3.4648 24 7 1.7266 -3.3985 -0.9160 25 1 -0.3634 0.0043 1.0276 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6584 2.1297 0.0006 29 1 3.7417 3.2622 0.5027 30 1 5.2860 2.3772 0.4979 31 1 5.0411 3.7495 -1.4417 32 1 5.3599 0.0086 -0.0101 33 1 4.4500 -2.8681 -1.0218 34 1 5.3555 -2.3372 0.4158 35 1 3.8287 -3.2320 0.6060 36 1 0.3085 -1.9930 1.7594 37 1 -0.9209 -4.1491 1.7606 38 1 -0.4130 -5.8164 -0.0038 39 1 3.6442 -3.8630 -3.5720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244689666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:34 Heat of formation + Delta-G solvation = -5.575632 kcal Electronic energy + Delta-G solvation = -21830.811840 eV Core-core repulsion = 18702.493111 eV Total energy + Delta-G solvation = -3128.318730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50046 -37.90238 -36.52270 -33.75803 -32.99428 -32.45111 -30.44190 -29.60353 -27.03825 -26.34778 -26.01243 -25.01956 -21.67728 -21.25064 -20.13407 -19.53834 -17.46011 -17.38883 -16.01264 -15.58217 -14.98436 -14.66018 -14.37218 -14.13707 -13.84905 -13.43632 -13.23882 -12.86736 -12.47485 -12.41155 -12.32379 -12.09942 -11.89748 -11.75491 -11.29176 -11.14937 -11.02470 -10.97877 -10.75116 -10.62323 -10.48364 -10.32213 -10.01287 -9.87857 -9.33884 -8.42058 -8.03140 -7.98573 -7.57969 -7.33664 -6.41846 -4.51798 1.65590 1.95466 2.73992 2.99796 3.09352 3.11193 3.20259 3.94500 4.09865 4.66199 4.73620 5.08549 5.14760 5.35629 5.40091 5.46081 5.53827 5.76021 5.83594 5.95153 6.05844 6.11792 6.15644 6.18821 6.38859 6.45762 6.55071 6.55818 6.69532 6.74858 6.83991 6.93512 6.99013 7.07852 7.15596 7.32319 7.35468 7.53673 7.59174 7.64889 7.72755 8.01413 8.20959 8.65340 8.90569 10.05017 10.29690 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.005745 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.157985 B = 4872.986352 C = 5974.107971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.102 4.102 5 C 0.123 3.877 6 O -0.566 6.566 7 C -0.114 4.114 8 C -0.046 4.046 9 C -0.102 4.102 10 C -0.002 4.002 11 C 0.180 3.820 12 C -0.297 4.297 13 C -0.060 4.060 14 C -0.275 4.275 15 C 0.254 3.746 16 C -0.432 4.432 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.710 5.710 20 Si 0.903 3.097 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.262 1.262 24 N -0.461 5.461 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.373 0.627 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 9.339 4.597 10.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.102 4.102 5 C 0.046 3.954 6 O -0.371 6.371 7 C -0.133 4.133 8 C -0.047 4.047 9 C -0.158 4.158 10 C -0.003 4.003 11 C 0.035 3.965 12 C -0.321 4.321 13 C -0.084 4.084 14 C -0.298 4.298 15 C 0.129 3.871 16 C -0.463 4.463 17 H 0.101 0.899 18 C -0.154 4.154 19 N -0.331 5.331 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.186 1.186 24 N -0.173 5.173 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.219 0.781 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.225 9.012 3.695 10.260 hybrid contribution -0.142 -0.218 0.271 0.375 sum 3.082 8.794 3.965 10.127 Atomic orbital electron populations 1.20784 0.91287 1.02542 1.01816 1.19842 0.95964 0.91938 0.99687 1.20602 0.93111 0.96979 1.02562 1.19402 0.93558 0.93543 1.03728 1.20938 0.97683 0.93432 0.83356 1.86652 1.79963 1.43776 1.26688 1.20712 0.99017 0.91330 1.02192 1.19937 0.92917 0.95181 0.96635 1.20717 0.96835 0.93866 1.04418 1.18593 0.92103 0.91690 0.97935 1.19627 0.92435 0.92467 0.91994 1.21155 1.06476 0.99748 1.04682 1.20763 0.97170 0.93727 0.96772 1.21768 1.06383 1.00547 1.01065 1.18541 0.87754 0.89707 0.91057 1.19565 1.15532 1.02405 1.08793 0.89927 1.26021 0.95898 0.95801 0.97667 1.70109 1.16495 1.19341 1.27156 0.86397 0.78462 0.81814 0.80593 1.19506 1.20101 1.18606 1.68908 1.26107 1.01099 1.21195 0.91572 0.92573 0.90732 0.86737 0.93268 0.93220 0.78068 0.86705 0.88784 0.93833 0.91849 0.88749 0.88624 0.88435 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.56 36.00 0.31 -1.53 16 2 C -0.07 -1.41 5.88 -104.28 -0.61 -2.02 16 3 C -0.11 -1.95 9.34 -39.63 -0.37 -2.32 16 4 C -0.10 -1.69 5.51 -104.55 -0.58 -2.27 16 5 C 0.12 1.55 7.16 36.00 0.26 1.81 16 6 O -0.57 -7.47 13.64 -35.23 -0.48 -7.95 16 7 C -0.11 -2.04 9.32 -39.63 -0.37 -2.41 16 8 C -0.05 -0.95 5.91 -104.28 -0.62 -1.56 16 9 C -0.10 -2.09 8.87 36.01 0.32 -1.77 16 10 C 0.00 -0.05 5.55 -104.90 -0.58 -0.63 16 11 C 0.18 4.34 4.37 -82.93 -0.36 3.97 16 12 C -0.30 -6.65 8.12 -38.79 -0.32 -6.97 16 13 C -0.06 -1.34 10.15 -39.40 -0.40 -1.74 16 14 C -0.27 -6.67 9.83 -38.64 -0.38 -7.05 16 15 C 0.25 6.83 6.55 -85.01 -0.56 6.27 16 16 C -0.43 -11.35 9.13 -37.72 -0.34 -11.70 16 17 H 0.08 2.05 7.86 -52.48 -0.41 1.63 16 18 C 0.07 1.79 5.48 -17.35 -0.10 1.70 16 19 N -0.71 -18.42 11.28 55.55 0.63 -17.79 16 20 Si 0.90 18.45 29.57 -169.99 -5.03 13.43 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 24 N -0.46 -12.27 6.75 -7.67 -0.05 -12.32 16 25 H 0.07 1.02 7.71 -51.93 -0.40 0.61 16 26 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.07 1.46 6.61 -51.93 -0.34 1.12 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.37 2.77 9.12 45.56 0.42 3.18 16 32 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.09 2.13 7.93 -51.93 -0.41 1.72 16 34 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 35 H 0.06 1.41 7.17 -51.93 -0.37 1.04 16 36 H 0.09 1.91 7.30 -52.49 -0.38 1.53 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 39 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -30.20 328.81 -9.08 -39.28 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.41 Total: 8.61 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -4.69 Total: -28.21 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.57 Total: -30.11 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.48 Total: -7.95 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.20 -9.08 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244689666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.708 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds