Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37912 * 120.07366 * 2 1 4 4 C 1.38406 * 120.15016 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.84662 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.47152 * 90.00549 * 5 4 3 7 7 C 1.38408 * 120.30881 * 0.23740 * 4 3 2 8 8 C 1.37917 * 120.15215 * 359.48803 * 7 4 3 9 9 C 1.50696 * 120.08154 * 180.27770 * 8 7 4 10 10 C 1.39682 * 120.07965 * 180.02562 * 2 1 3 11 11 C 1.47822 * 120.15048 * 359.97438 * 10 2 1 12 12 C 1.39679 * 120.65266 * 89.99990 * 11 10 2 13 13 C 1.38393 * 118.47700 * 180.02562 * 12 11 10 14 14 C 1.39057 * 119.72424 * 0.02562 * 13 12 11 15 15 N 1.31281 * 121.34203 * 359.97438 * 14 13 12 16 16 C 1.33701 * 121.63492 * 359.70204 * 15 14 13 17 17 C 1.40814 * 119.94234 * 180.30891 * 16 15 14 18 18 H 1.07999 * 120.00521 * 180.26727 * 17 16 15 19 19 C 1.40152 * 120.00088 * 0.27253 * 17 16 15 20 20 N 1.30695 * 119.99699 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00330 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47208 * 90.00016 * 21 19 17 23 23 H 1.48499 * 109.46894 * 209.99918 * 21 19 17 24 24 H 1.48496 * 109.46839 * 329.99455 * 21 19 17 25 25 H 1.09006 * 109.47003 * 89.99948 * 1 2 3 26 26 H 1.09005 * 109.46826 * 209.99594 * 1 2 3 27 27 H 1.08997 * 109.47478 * 329.99885 * 1 2 3 28 28 H 1.08003 * 119.92779 * 0.02719 * 3 2 1 29 29 H 1.08997 * 109.47198 * 330.00227 * 5 4 3 30 30 H 1.09008 * 109.47393 * 209.99944 * 5 4 3 31 31 H 0.96700 * 114.00311 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.92521 * 179.72411 * 7 4 3 33 33 H 1.09003 * 109.46825 * 270.25738 * 9 8 7 34 34 H 1.08998 * 109.47020 * 30.25058 * 9 8 7 35 35 H 1.08994 * 109.47782 * 150.25580 * 9 8 7 36 36 H 1.08001 * 120.76108 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.13657 * 179.97438 * 13 12 11 38 38 H 1.08004 * 119.33162 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99910 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1935 0.0000 4 6 3.5822 1.1953 -0.0005 5 6 4.3304 2.5034 -0.0011 6 8 4.5676 2.9171 1.3460 7 6 4.2822 0.0014 -0.0060 8 6 3.6039 -1.1995 -0.0003 9 6 4.3678 -2.4985 0.0000 10 6 2.2071 -1.2087 -0.0005 11 6 1.4731 -2.4918 -0.0005 12 6 1.1191 -3.1097 -1.2022 13 6 0.4320 -4.3099 -1.1496 14 6 0.1122 -4.8679 0.0833 15 7 0.4494 -4.2794 1.2073 16 6 1.1193 -3.1223 1.2195 17 6 1.4686 -2.5254 2.4461 18 1 2.0059 -1.5886 2.4573 19 6 1.1192 -3.1470 3.6527 20 7 0.4686 -4.2805 3.6393 21 14 1.5819 -2.3549 5.2799 22 1 0.4898 -1.4491 5.7178 23 1 1.7894 -3.4109 6.3031 24 1 2.8346 -1.5752 5.1123 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6581 2.1288 0.0004 29 1 3.7381 3.2606 -0.5148 30 1 5.2832 2.3768 -0.5153 31 1 5.0459 3.7541 1.4220 32 1 5.3622 0.0100 -0.0109 33 1 4.5520 -2.8119 -1.0276 34 1 5.3192 -2.3604 0.5137 35 1 3.7850 -3.2627 0.5140 36 1 1.3749 -2.6607 -2.1505 37 1 0.1446 -4.8106 -2.0624 38 1 -0.4238 -5.8050 0.1169 39 1 0.2271 -4.7110 4.4744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244691802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -7.258447 kcal Electronic energy + Delta-G solvation = -22091.507895 eV Core-core repulsion = 18963.116193 eV Total energy + Delta-G solvation = -3128.391702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.43329 -37.86358 -36.48130 -33.65363 -32.90273 -32.71419 -30.33432 -29.60115 -26.97924 -26.14296 -26.10230 -24.92730 -21.71200 -21.21407 -20.10918 -19.43354 -17.45831 -17.35900 -15.88077 -15.55723 -15.44431 -14.56137 -14.34262 -14.19620 -13.81044 -13.22380 -13.14501 -12.77915 -12.59352 -12.40615 -12.37457 -12.05824 -11.83655 -11.75562 -11.25348 -11.20653 -11.15345 -10.98082 -10.86367 -10.56407 -10.46009 -10.24933 -9.98193 -9.84770 -9.40567 -8.17760 -7.96945 -7.96178 -7.54115 -7.43584 -6.43666 -4.53985 1.86617 2.00304 2.69285 2.95431 3.09115 3.14821 3.22602 3.94807 4.12555 4.71820 4.72627 5.12953 5.19808 5.42695 5.51110 5.56544 5.64949 5.84771 5.87587 6.03235 6.09481 6.11928 6.21816 6.22299 6.22594 6.30657 6.45516 6.53911 6.69535 6.75621 6.85866 6.96603 7.01967 7.04495 7.14167 7.35877 7.43867 7.53611 7.61940 7.67758 7.76805 8.02855 8.25583 8.61869 8.91811 10.07484 10.26252 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.007360 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.301716 B = 3803.313693 C = 4942.711890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.080 4.080 3 C -0.109 4.109 4 C -0.113 4.113 5 C 0.124 3.876 6 O -0.566 6.566 7 C -0.109 4.109 8 C -0.079 4.079 9 C -0.106 4.106 10 C 0.035 3.965 11 C -0.226 4.226 12 C -0.036 4.036 13 C -0.322 4.322 14 C 0.128 3.872 15 N -0.483 5.483 16 C 0.271 3.729 17 C -0.415 4.415 18 H 0.085 0.915 19 C 0.070 3.930 20 N -0.710 5.710 21 Si 0.900 3.100 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.259 1.259 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.372 0.628 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 8.779 -5.248 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.080 4.080 3 C -0.127 4.127 4 C -0.113 4.113 5 C 0.047 3.953 6 O -0.371 6.371 7 C -0.127 4.127 8 C -0.079 4.079 9 C -0.162 4.162 10 C 0.034 3.966 11 C -0.231 4.231 12 C -0.061 4.061 13 C -0.345 4.345 14 C -0.039 4.039 15 N -0.195 5.195 16 C 0.148 3.852 17 C -0.446 4.446 18 H 0.103 0.897 19 C -0.156 4.156 20 N -0.331 5.331 21 Si 0.724 3.276 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.182 1.182 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.399 7.690 -4.135 9.777 hybrid contribution 0.701 1.232 -0.302 1.449 sum 5.100 8.922 -4.437 11.194 Atomic orbital electron populations 1.20680 0.91436 1.02839 1.01261 1.20040 0.95992 0.92108 0.99836 1.20660 0.93096 0.97152 1.01824 1.19367 0.93538 0.93413 1.05013 1.20926 0.97530 0.93508 0.83324 1.86662 1.79985 1.43547 1.26888 1.20664 0.98758 0.91495 1.01824 1.20042 0.93391 0.94712 0.99787 1.20678 0.98951 0.95343 1.01253 1.18527 0.91344 0.92341 0.94377 1.19195 1.12069 0.97492 0.94349 1.20771 0.95530 0.94266 0.95484 1.21161 1.14519 1.01050 0.97766 1.22559 0.94997 0.97467 0.88893 1.68770 1.14703 1.09920 1.26099 1.18481 0.88139 0.87856 0.90759 1.19596 1.29651 1.06065 0.89250 0.89657 1.26102 0.93844 0.94479 1.01166 1.70116 1.22741 1.11988 1.28245 0.86416 0.80433 0.79824 0.80925 1.19249 1.20036 1.18233 0.92255 0.90324 0.92687 0.87022 0.93396 0.93398 0.78178 0.87026 0.92261 0.92689 0.90298 0.88981 0.88919 0.86606 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.62 36.01 0.35 -1.60 16 2 C -0.08 -1.57 5.92 -104.20 -0.62 -2.19 16 3 C -0.11 -1.92 9.34 -39.64 -0.37 -2.29 16 4 C -0.11 -1.91 5.52 -104.50 -0.58 -2.49 16 5 C 0.12 1.61 7.16 36.01 0.26 1.87 16 6 O -0.57 -7.72 13.64 -35.23 -0.48 -8.20 16 7 C -0.11 -1.93 9.34 -39.64 -0.37 -2.30 16 8 C -0.08 -1.56 5.92 -104.20 -0.62 -2.18 16 9 C -0.11 -1.95 9.62 36.00 0.35 -1.60 16 10 C 0.03 0.74 3.88 -104.90 -0.41 0.34 16 11 C -0.23 -5.26 2.50 -104.07 -0.26 -5.52 16 12 C -0.04 -0.80 9.92 -38.99 -0.39 -1.18 16 13 C -0.32 -7.04 10.10 -39.22 -0.40 -7.44 16 14 C 0.13 3.05 11.17 -17.48 -0.20 2.85 16 15 N -0.48 -12.99 7.85 -10.91 -0.09 -13.07 16 16 C 0.27 7.12 6.05 -84.71 -0.51 6.61 16 17 C -0.42 -10.98 8.79 -37.89 -0.33 -11.32 16 18 H 0.09 2.26 6.85 -52.49 -0.36 1.90 16 19 C 0.07 1.79 5.50 -17.32 -0.10 1.69 16 20 N -0.71 -18.68 11.46 55.56 0.64 -18.05 16 21 Si 0.90 19.12 29.56 -169.99 -5.03 14.09 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.68 6.88 -51.93 -0.36 1.33 16 27 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 28 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 29 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.05 0.53 8.08 -51.92 -0.42 0.11 16 31 H 0.37 2.93 9.12 45.56 0.42 3.34 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.08 1.69 6.86 -51.93 -0.36 1.33 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 39 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -30.24 331.09 -8.58 -38.83 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.43 Total: 8.16 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -4.18 Total: -26.74 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.55 Total: -31.12 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.48 Total: -8.20 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.24 -8.58 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244691802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.567 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds