Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38019 * 120.06153 * 2 1 4 4 C 1.38323 * 120.11905 * 180.27791 * 3 2 1 5 5 C 1.50702 * 119.87532 * 179.73855 * 4 3 2 6 6 O 1.42897 * 109.47457 * 270.02335 * 5 4 3 7 7 C 1.38322 * 120.24733 * 359.77098 * 4 3 2 8 8 C 1.38014 * 120.11914 * 359.97438 * 7 4 3 9 9 C 1.50699 * 120.06432 * 180.02562 * 8 7 4 10 10 C 1.39335 * 120.05855 * 179.79009 * 2 1 3 11 11 C 1.48381 * 120.12573 * 359.97438 * 10 2 1 12 12 C 1.40041 * 120.82803 * 114.96667 * 11 10 2 13 13 C 1.38502 * 119.42753 * 180.30453 * 12 11 10 14 14 N 1.31486 * 121.14110 * 359.72143 * 13 12 11 15 15 C 1.33639 * 121.79476 * 0.02562 * 14 13 12 16 16 C 1.41432 * 119.77425 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99618 * 179.97438 * 16 15 14 18 18 C 1.40028 * 120.00284 * 359.96898 * 16 15 14 19 19 N 1.30737 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47127 * 90.00296 * 20 18 16 22 22 H 1.48497 * 109.47237 * 210.00185 * 20 18 16 23 23 H 1.48502 * 109.47147 * 330.00344 * 20 18 16 24 24 C 1.39309 * 120.81807 * 294.72356 * 11 10 2 25 25 H 1.08997 * 109.47042 * 270.21158 * 1 2 3 26 26 H 1.09003 * 109.47266 * 30.20837 * 1 2 3 27 27 H 1.08990 * 109.47449 * 150.20629 * 1 2 3 28 28 H 1.08000 * 119.94248 * 0.04547 * 3 2 1 29 29 H 1.09001 * 109.47282 * 30.03067 * 5 4 3 30 30 H 1.09001 * 109.46804 * 150.02350 * 5 4 3 31 31 H 0.96696 * 114.00017 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.93998 * 179.97438 * 7 4 3 33 33 H 1.08996 * 109.47697 * 269.98342 * 9 8 7 34 34 H 1.09003 * 109.46864 * 29.98256 * 9 8 7 35 35 H 1.09002 * 109.47577 * 149.97977 * 9 8 7 36 36 H 1.08001 * 120.28337 * 0.04307 * 12 11 10 37 37 H 1.07996 * 119.43153 * 179.70140 * 13 12 11 38 38 H 0.96998 * 120.00206 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.58514 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1945 0.0000 4 6 3.5816 1.1959 -0.0058 5 6 4.3310 2.5034 -0.0117 6 8 4.5617 2.9142 -1.3608 7 6 4.2796 0.0017 -0.0069 8 6 3.5984 -1.1986 -0.0016 9 6 4.3601 -2.4989 -0.0022 10 6 2.2049 -1.2060 0.0044 11 6 1.4672 -2.4933 0.0097 12 6 1.5503 -3.3726 -1.0771 13 6 0.8444 -4.5638 -1.0442 14 7 0.1019 -4.8858 -0.0079 15 6 -0.0073 -4.0848 1.0561 16 6 -0.8177 -4.4739 2.1480 17 1 -0.9082 -3.8295 3.0099 18 6 -1.5027 -5.6947 2.1114 19 7 -1.3929 -6.4749 1.0682 20 14 -2.5737 -6.2083 3.5532 21 1 -3.9569 -5.7098 3.3447 22 1 -2.5913 -7.6898 3.6537 23 1 -2.0242 -5.6336 4.8074 24 6 0.6786 -2.8595 1.0982 25 1 -0.3633 0.0038 1.0276 26 1 -0.3634 0.8881 -0.5171 27 1 -0.3634 -0.8917 -0.5106 28 1 1.6585 2.1299 0.0007 29 1 3.7419 3.2622 0.5034 30 1 5.2861 2.3771 0.4980 31 1 5.0403 3.7506 -1.4409 32 1 5.3595 0.0086 -0.0118 33 1 4.5392 -2.8147 -1.0299 34 1 5.3140 -2.3614 0.5072 35 1 3.7782 -3.2612 0.5160 36 1 2.1563 -3.1220 -1.9353 37 1 0.9047 -5.2397 -1.8844 38 1 -1.8671 -7.3207 1.0430 39 1 0.5922 -2.2107 1.9572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244692556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = -8.270737 kcal Electronic energy + Delta-G solvation = -21343.073788 eV Core-core repulsion = 18214.638189 eV Total energy + Delta-G solvation = -3128.435598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.69907 -37.95592 -36.71378 -33.80362 -33.23467 -32.79069 -30.00089 -29.85822 -27.24808 -26.44817 -25.80499 -25.46792 -21.75702 -21.26521 -20.38705 -19.81340 -17.55787 -17.40614 -15.90629 -15.76362 -15.19648 -14.70788 -14.31567 -14.20388 -14.01286 -13.67658 -13.39806 -13.01585 -12.73213 -12.65569 -12.52974 -12.13705 -12.11062 -11.88046 -11.50577 -11.30117 -11.18189 -11.15413 -10.80556 -10.72226 -10.59579 -10.35812 -10.17434 -9.93224 -9.37147 -8.44492 -8.24478 -7.79200 -7.64870 -7.56624 -6.40531 -4.53363 1.49003 1.69597 2.75156 2.89695 3.08341 3.11109 3.18353 3.87680 3.94135 4.47524 4.73637 4.91007 4.98391 5.17018 5.27397 5.32101 5.33884 5.59183 5.73737 5.84951 5.87408 5.96796 6.01851 6.05865 6.11223 6.17326 6.32192 6.43460 6.53052 6.66551 6.71038 6.76314 6.79725 6.87299 7.05231 7.13889 7.26527 7.34341 7.48380 7.54956 7.71117 7.99660 8.21848 8.64764 8.91000 10.11113 10.31343 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028295 B = 0.004006 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.320252 B = 6987.293944 C = 7378.903468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.109 4.109 4 C -0.103 4.103 5 C 0.122 3.878 6 O -0.567 6.567 7 C -0.109 4.109 8 C -0.074 4.074 9 C -0.109 4.109 10 C -0.015 4.015 11 C 0.006 3.994 12 C -0.299 4.299 13 C 0.124 3.876 14 N -0.484 5.484 15 C 0.257 3.743 16 C -0.433 4.433 17 H 0.082 0.918 18 C 0.070 3.930 19 N -0.716 5.716 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.251 4.251 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.375 0.625 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 12.188 -0.692 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.127 4.127 4 C -0.104 4.104 5 C 0.045 3.955 6 O -0.373 6.373 7 C -0.127 4.127 8 C -0.074 4.074 9 C -0.166 4.166 10 C -0.015 4.015 11 C 0.000 4.000 12 C -0.323 4.323 13 C -0.041 4.041 14 N -0.197 5.197 15 C 0.132 3.868 16 C -0.464 4.464 17 H 0.101 0.899 18 C -0.155 4.155 19 N -0.337 5.337 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.274 4.274 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.221 0.779 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.084 0.916 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.977 10.620 -0.858 12.736 hybrid contribution 0.364 1.155 0.697 1.397 sum 7.341 11.775 -0.161 13.877 Atomic orbital electron populations 1.20775 0.90864 1.02610 1.02472 1.19956 0.96272 0.91891 0.99203 1.20722 0.93149 0.97267 1.01535 1.19435 0.93581 0.93651 1.03687 1.20944 0.97792 0.93389 0.83388 1.86616 1.80091 1.43878 1.26674 1.20714 0.99094 0.91313 1.01619 1.19937 0.92940 0.95167 0.99381 1.20762 0.98868 0.94695 1.02271 1.18911 0.92089 0.92867 0.97611 1.18435 0.95431 0.91260 0.94852 1.21263 1.11695 0.99139 1.00168 1.22438 0.92247 0.93082 0.96350 1.68723 1.18692 1.32100 1.00136 1.18523 0.89931 0.87116 0.91251 1.19608 1.22595 1.02637 1.01600 0.89941 1.26051 0.96526 0.96315 0.96654 1.70132 1.29796 1.07657 1.26136 0.86360 0.80472 0.78323 0.81868 1.19405 1.20124 1.18564 1.21750 1.06026 1.00690 0.98959 0.91119 0.92419 0.90606 0.86493 0.93076 0.93093 0.77853 0.86523 0.91332 0.92436 0.90574 0.88892 0.86427 0.91640 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.08 36.01 0.33 -1.51 16 2 C -0.07 -1.29 5.90 -104.29 -0.62 -1.91 16 3 C -0.11 -1.68 9.34 -39.63 -0.37 -2.05 16 4 C -0.10 -1.52 5.51 -104.56 -0.58 -2.10 16 5 C 0.12 1.35 7.16 36.01 0.26 1.61 16 6 O -0.57 -6.47 13.64 -35.23 -0.48 -6.95 16 7 C -0.11 -1.68 9.34 -39.63 -0.37 -2.05 16 8 C -0.07 -1.29 5.90 -104.29 -0.62 -1.91 16 9 C -0.11 -1.75 9.06 36.01 0.33 -1.43 16 10 C -0.01 -0.28 5.37 -104.90 -0.56 -0.85 16 11 C 0.01 0.14 2.94 -104.65 -0.31 -0.17 16 12 C -0.30 -6.66 8.95 -38.81 -0.35 -7.00 16 13 C 0.12 2.98 11.17 -17.60 -0.20 2.78 16 14 N -0.48 -13.21 7.85 -11.20 -0.09 -13.29 16 15 C 0.26 6.91 6.55 -85.02 -0.56 6.35 16 16 C -0.43 -11.49 9.14 -37.70 -0.34 -11.84 16 17 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 18 C 0.07 1.77 5.50 -17.35 -0.10 1.67 16 19 N -0.72 -19.00 11.46 55.55 0.64 -18.36 16 20 Si 0.91 18.51 29.56 -169.99 -5.02 13.48 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.25 -6.06 8.70 -38.34 -0.33 -6.40 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.08 1.44 6.93 -51.93 -0.36 1.08 16 28 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.38 2.20 9.12 45.56 0.42 2.61 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.08 1.40 6.92 -51.93 -0.36 1.04 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 38 H 0.27 6.55 8.29 -40.82 -0.34 6.22 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 331.46 15.07 4.99 4.99 Total: -1.00 -30.69 331.46 -8.83 -39.52 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.49 Total: 7.41 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -4.38 Total: -26.80 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.55 Total: -31.66 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.48 Total: -6.95 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.69 -8.83 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244692556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.249 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds