Wall clock time and date at job start Tue Mar 31 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37922 * 120.07661 * 2 1 4 4 C 1.38402 * 120.15114 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.84685 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46586 * 90.00733 * 5 4 3 7 7 C 1.38397 * 120.30413 * 0.27769 * 4 3 2 8 8 C 1.37922 * 120.14950 * 359.44454 * 7 4 3 9 9 C 1.50706 * 120.07745 * 180.29521 * 8 7 4 10 10 C 1.39664 * 119.84947 * 0.54984 * 8 7 4 11 11 C 1.47856 * 120.15417 * 179.70368 * 10 8 7 12 12 C 1.39301 * 120.78096 * 269.74005 * 11 10 8 13 13 N 1.31668 * 120.66248 * 179.75167 * 12 11 10 14 14 C 1.32211 * 122.50063 * 0.54202 * 13 12 11 15 15 C 1.36487 * 121.50493 * 359.73091 * 14 13 12 16 16 C 1.41112 * 119.10602 * 359.97438 * 15 14 13 17 17 C 1.40942 * 121.10391 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99790 * 155.75228 * 17 16 15 19 19 C 1.40179 * 120.00272 * 335.75111 * 17 16 15 20 20 N 1.30679 * 120.00056 * 343.44137 * 19 17 16 21 21 Si 1.86796 * 119.99946 * 163.43611 * 19 17 16 22 22 H 1.48501 * 109.47473 * 60.00197 * 21 19 17 23 23 H 1.48501 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47069 * 300.00189 * 21 19 17 25 25 H 1.08996 * 109.46778 * 89.99952 * 1 2 3 26 26 H 1.08997 * 109.46949 * 210.00583 * 1 2 3 27 27 H 1.09002 * 109.47202 * 330.00074 * 1 2 3 28 28 H 1.08001 * 119.92177 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47322 * 330.01144 * 5 4 3 30 30 H 1.09000 * 109.47381 * 209.99930 * 5 4 3 31 31 H 0.96702 * 113.99650 * 180.02562 * 6 5 4 32 32 H 1.08004 * 119.92702 * 179.72171 * 7 4 3 33 33 H 1.08996 * 109.46864 * 270.25668 * 9 8 7 34 34 H 1.09001 * 109.47185 * 30.25382 * 9 8 7 35 35 H 1.09000 * 109.46987 * 150.25758 * 9 8 7 36 36 H 1.08004 * 119.67020 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.24834 * 179.74558 * 14 13 12 38 38 H 1.08004 * 120.44315 * 180.02562 * 15 14 13 39 39 H 0.96996 * 120.00299 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1935 0.0000 4 6 3.5823 1.1953 -0.0005 5 6 4.3306 2.5034 -0.0011 6 8 4.5677 2.9170 1.3461 7 6 4.2822 0.0014 -0.0069 8 6 3.6037 -1.1994 -0.0011 9 6 4.3675 -2.4985 -0.0013 10 6 2.2070 -1.2086 -0.0005 11 6 1.4728 -2.4920 -0.0010 12 6 1.1136 -3.1074 -1.1980 13 7 0.4640 -4.2527 -1.1957 14 6 0.1125 -4.8678 -0.0794 15 6 0.4113 -4.3471 1.1463 16 6 1.1118 -3.1244 1.2205 17 6 1.4416 -2.5485 2.4639 18 1 2.2753 -1.8660 2.5387 19 6 0.6875 -2.8614 3.6034 20 7 -0.4911 -3.4113 3.4762 21 14 1.3674 -2.4924 5.3036 22 1 1.6203 -1.0345 5.4300 23 1 0.3840 -2.9157 6.3326 24 1 2.6389 -3.2341 5.5000 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6582 2.1288 -0.0004 29 1 3.7382 3.2606 -0.5147 30 1 5.2833 2.3768 -0.5153 31 1 5.0461 3.7539 1.4221 32 1 5.3622 0.0099 -0.0118 33 1 4.5512 -2.8118 -1.0290 34 1 5.3191 -2.3606 0.5121 35 1 3.7846 -3.2627 0.5128 36 1 1.3743 -2.6425 -2.1374 37 1 -0.4230 -5.8038 -0.1389 38 1 0.1162 -4.8644 2.0473 39 1 -1.0131 -3.6275 4.2646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244693330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:48 Heat of formation + Delta-G solvation = -18.418436 kcal Electronic energy + Delta-G solvation = -22079.552591 eV Core-core repulsion = 18950.676956 eV Total energy + Delta-G solvation = -3128.875635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.45340 -38.00355 -36.50221 -34.18812 -32.90146 -32.69961 -30.39247 -29.35229 -26.97465 -26.27150 -26.13749 -25.01365 -21.70510 -21.32222 -20.10635 -19.44433 -17.59147 -17.35875 -15.79800 -15.57224 -15.46796 -14.60528 -14.42068 -14.37846 -13.80991 -13.23286 -13.10775 -12.75112 -12.61813 -12.56502 -12.36937 -12.15977 -12.05075 -11.83137 -11.44849 -11.30248 -11.22866 -11.14977 -10.82569 -10.51908 -10.45954 -10.31323 -9.98302 -9.75933 -9.44519 -8.20064 -8.00895 -7.93727 -7.63142 -7.56675 -6.90983 -4.63323 1.86741 2.00749 2.65227 2.80487 2.99683 3.04245 3.24048 3.83056 4.12799 4.60014 4.71881 5.13030 5.19980 5.42868 5.49265 5.51361 5.63408 5.67798 5.81076 5.92263 6.02353 6.15955 6.20710 6.22015 6.28586 6.34343 6.45077 6.70123 6.75425 6.83838 6.88786 6.98099 7.04788 7.09345 7.13966 7.36097 7.43967 7.45573 7.61597 7.68028 7.84871 8.06773 8.42209 8.67340 8.71960 9.61468 9.98113 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.007316 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.950902 B = 3826.188692 C = 4938.837192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.073 4.073 3 C -0.109 4.109 4 C -0.112 4.112 5 C 0.124 3.876 6 O -0.566 6.566 7 C -0.110 4.110 8 C -0.082 4.082 9 C -0.106 4.106 10 C 0.035 3.965 11 C -0.226 4.226 12 C 0.126 3.874 13 N -0.579 5.579 14 C 0.081 3.919 15 C -0.211 4.211 16 C 0.147 3.853 17 C -0.439 4.439 18 H 0.083 0.917 19 C 0.080 3.920 20 N -0.779 5.779 21 Si 0.907 3.093 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.261 1.261 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.372 0.628 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 7.934 -2.780 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.073 4.073 3 C -0.127 4.127 4 C -0.112 4.112 5 C 0.047 3.953 6 O -0.371 6.371 7 C -0.128 4.128 8 C -0.082 4.082 9 C -0.163 4.163 10 C 0.034 3.966 11 C -0.232 4.232 12 C -0.031 4.031 13 N -0.293 5.293 14 C -0.067 4.067 15 C -0.234 4.234 16 C 0.139 3.861 17 C -0.469 4.469 18 H 0.101 0.899 19 C -0.141 4.141 20 N -0.403 5.403 21 Si 0.730 3.270 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.185 1.185 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.481 6.848 -3.314 9.377 hybrid contribution 0.704 1.166 1.602 2.102 sum 6.185 8.014 -1.712 10.267 Atomic orbital electron populations 1.20692 0.91353 1.03027 1.01240 1.20027 0.96035 0.92020 0.99212 1.20674 0.93087 0.97203 1.01783 1.19364 0.93539 0.93409 1.04915 1.20931 0.97539 0.93537 0.83306 1.86661 1.79991 1.43548 1.26912 1.20641 0.98712 0.91482 1.01963 1.20035 0.93397 0.94695 1.00119 1.20687 0.98895 0.95262 1.01432 1.18479 0.91225 0.92325 0.94591 1.19355 1.12602 0.96841 0.94388 1.21957 0.94581 0.91444 0.95168 1.67307 1.19347 1.11457 1.31224 1.21687 0.97910 0.98157 0.88986 1.21896 1.06186 0.97560 0.97727 1.17651 0.87590 0.89596 0.91257 1.19525 1.12727 1.23093 0.91551 0.89909 1.25997 0.93687 0.92562 1.01816 1.69732 1.08191 1.29585 1.32840 0.86362 0.79938 0.80391 0.80271 1.18588 1.20137 1.18541 0.92256 0.90027 0.92801 0.87030 0.93371 0.93386 0.78179 0.87053 0.92087 0.92683 0.90539 0.86567 0.86632 0.85729 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.62 36.01 0.35 -1.68 16 2 C -0.07 -1.45 5.92 -104.20 -0.62 -2.06 16 3 C -0.11 -1.94 9.34 -39.64 -0.37 -2.31 16 4 C -0.11 -1.88 5.52 -104.50 -0.58 -2.46 16 5 C 0.12 1.60 7.17 36.01 0.26 1.86 16 6 O -0.57 -7.70 13.64 -35.23 -0.48 -8.18 16 7 C -0.11 -1.91 9.34 -39.64 -0.37 -2.28 16 8 C -0.08 -1.59 5.92 -104.20 -0.62 -2.21 16 9 C -0.11 -1.88 9.62 36.01 0.35 -1.54 16 10 C 0.03 0.73 4.21 -104.89 -0.44 0.29 16 11 C -0.23 -5.20 2.50 -104.04 -0.26 -5.46 16 12 C 0.13 2.86 10.95 -17.23 -0.19 2.67 16 13 N -0.58 -13.81 10.32 -13.37 -0.14 -13.95 16 14 C 0.08 1.91 11.09 -18.02 -0.20 1.71 16 15 C -0.21 -5.26 8.73 -39.12 -0.34 -5.61 16 16 C 0.15 3.68 5.11 -106.26 -0.54 3.14 16 17 C -0.44 -11.08 8.59 -37.83 -0.32 -11.40 16 18 H 0.08 2.13 7.35 -52.49 -0.39 1.74 16 19 C 0.08 1.93 5.20 -17.31 -0.09 1.84 16 20 N -0.78 -19.06 10.93 55.56 0.61 -18.45 16 21 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 22 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.82 6.88 -51.93 -0.36 1.46 16 27 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.37 2.91 9.12 45.56 0.42 3.33 16 32 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.08 1.55 6.88 -51.93 -0.36 1.19 16 36 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 38 H 0.12 3.16 6.22 -52.48 -0.33 2.84 16 39 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -28.71 330.18 -8.41 -37.13 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -4.36 Total: 10.58 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -3.99 Total: -25.48 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.47 Total: -32.39 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.48 Total: -8.18 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.71 -8.41 -37.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244693330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.710 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds