Wall clock time and date at job start Tue Mar 31 2020 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37931 * 119.92989 * 2 1 4 4 C 1.39614 * 119.84899 * 180.29585 * 3 2 1 5 5 C 1.47979 * 120.14292 * 179.74407 * 4 3 2 6 6 C 1.40254 * 120.34330 * 359.70739 * 5 4 3 7 7 C 1.36691 * 118.60035 * 179.74809 * 6 5 4 8 8 C 1.40871 * 119.25438 * 0.50003 * 7 6 5 9 9 C 1.40998 * 119.67937 * 179.74009 * 8 7 6 10 10 H 1.07997 * 120.00202 * 0.02562 * 9 8 7 11 11 C 1.40108 * 119.99692 * 180.02562 * 9 8 7 12 12 N 1.30710 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99795 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46972 * 90.00334 * 13 11 9 15 15 H 1.48501 * 109.46954 * 210.00055 * 13 11 9 16 16 H 1.48498 * 109.47196 * 330.00359 * 13 11 9 17 17 N 1.33778 * 120.63754 * 359.76327 * 8 7 6 18 18 C 1.31191 * 121.50410 * 359.97438 * 17 8 7 19 19 C 1.39621 * 119.71305 * 359.72521 * 4 3 2 20 20 C 1.37925 * 119.84976 * 359.97438 * 19 4 3 21 21 C 1.50700 * 119.92588 * 179.97438 * 20 19 4 22 22 C 1.38393 * 120.14964 * 0.02562 * 20 19 4 23 23 C 1.50699 * 119.85530 * 179.97438 * 22 20 19 24 24 O 1.42905 * 109.46972 * 90.00124 * 23 22 20 25 25 H 1.09002 * 109.46634 * 270.23755 * 1 2 3 26 26 H 1.09002 * 109.46646 * 30.23400 * 1 2 3 27 27 H 1.08999 * 109.46722 * 150.23130 * 1 2 3 28 28 H 1.07995 * 120.07078 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.70343 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.37313 * 180.23950 * 7 6 5 31 31 H 0.96996 * 119.99950 * 179.97438 * 12 11 9 32 32 H 1.08001 * 119.65267 * 180.02562 * 18 17 8 33 33 H 1.08002 * 120.07280 * 179.97438 * 19 4 3 34 34 H 1.09000 * 109.47154 * 270.02053 * 21 20 19 35 35 H 1.08997 * 109.47268 * 30.02395 * 21 20 19 36 36 H 1.09009 * 109.47256 * 150.02122 * 21 20 19 37 37 H 1.09000 * 109.47247 * 330.00059 * 23 22 20 38 38 H 1.09001 * 109.47358 * 209.99485 * 23 22 20 39 39 H 0.96696 * 114.00036 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1954 0.0000 4 6 3.5914 1.1934 -0.0063 5 6 4.3363 2.4720 -0.0120 6 6 3.6470 3.6935 -0.0174 7 6 4.3707 4.8532 -0.0174 8 6 5.7778 4.7866 -0.0226 9 6 6.5331 5.9772 -0.0282 10 1 6.0326 6.9342 -0.0280 11 6 7.9329 5.9187 -0.0340 12 7 8.5386 4.7604 -0.0348 13 14 8.9336 7.4960 -0.0421 14 1 9.2047 7.9173 1.3558 15 1 10.2196 7.2628 -0.7470 16 1 8.1719 8.5619 -0.7414 17 7 6.4044 3.6046 -0.0229 18 6 5.7372 2.4750 -0.0178 19 6 4.2817 -0.0202 -0.0067 20 6 3.5814 -1.2084 -0.0003 21 6 4.3247 -2.5193 -0.0013 22 6 2.1975 -1.1995 0.0058 23 6 1.4389 -2.5016 0.0121 24 8 1.2052 -2.9102 1.3614 25 1 -0.3633 0.0043 1.0277 26 1 -0.3633 0.8879 -0.5175 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6553 2.1306 0.0004 29 1 2.5673 3.7175 -0.0179 30 1 3.8693 5.8098 -0.0175 31 1 9.5077 4.7199 -0.0392 32 1 6.2736 1.5376 -0.0178 33 1 5.3617 -0.0285 -0.0119 34 1 4.4989 -2.8374 -1.0292 35 1 5.2806 -2.3953 0.5075 36 1 3.7323 -3.2734 0.5170 37 1 2.0227 -3.2647 -0.5026 38 1 0.4847 -2.3688 -0.4976 39 1 0.7200 -3.7427 1.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244693384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:33 Heat of formation + Delta-G solvation = -7.905155 kcal Electronic energy + Delta-G solvation = -20979.857540 eV Core-core repulsion = 17851.437795 eV Total energy + Delta-G solvation = -3128.419745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.56077 -38.14540 -36.43954 -34.05220 -33.31805 -32.54367 -30.70206 -29.48437 -27.78181 -26.55129 -26.21156 -24.26059 -22.02827 -21.71072 -20.00300 -19.42533 -17.65980 -17.43872 -16.17692 -15.87905 -15.39093 -14.74258 -14.31715 -14.14316 -13.75438 -13.32700 -13.22837 -13.01954 -12.95375 -12.65045 -12.42453 -12.41524 -12.34654 -11.87768 -11.65102 -11.45091 -11.22411 -11.10477 -11.00143 -10.75823 -10.50718 -10.24485 -10.01480 -9.89252 -9.60017 -8.73388 -8.25824 -8.09600 -7.69105 -7.18300 -6.59273 -4.64353 1.52217 1.89935 2.71956 2.98851 3.01011 3.02363 3.11855 3.79743 4.15324 4.59763 4.74562 5.00223 5.06142 5.25600 5.32281 5.39112 5.44870 5.60929 5.73610 5.78162 5.80180 5.85059 5.91451 5.99451 6.03452 6.05737 6.13873 6.22831 6.48887 6.60295 6.69808 6.73678 6.91717 6.98515 7.05008 7.10924 7.27316 7.45196 7.59367 7.63959 7.75350 7.89227 8.05111 8.44856 8.74479 9.94732 10.10639 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035298 B = 0.003471 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.062061 B = 8064.647933 C = 8750.895965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.158 4.158 4 C 0.048 3.952 5 C -0.279 4.279 6 C -0.034 4.034 7 C -0.272 4.272 8 C 0.251 3.749 9 C -0.407 4.407 10 H 0.088 0.912 11 C 0.062 3.938 12 N -0.699 5.699 13 Si 0.912 3.088 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.259 1.259 17 N -0.489 5.489 18 C 0.159 3.841 19 C -0.155 4.155 20 C -0.052 4.052 21 C -0.115 4.115 22 C -0.143 4.143 23 C 0.122 3.878 24 O -0.566 6.566 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.277 0.723 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 -10.444 -0.919 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.176 4.176 4 C 0.047 3.953 5 C -0.285 4.285 6 C -0.057 4.057 7 C -0.295 4.295 8 C 0.129 3.871 9 C -0.436 4.436 10 H 0.106 0.894 11 C -0.165 4.165 12 N -0.318 5.318 13 Si 0.736 3.264 14 H -0.191 1.191 15 H -0.199 1.199 16 H -0.183 1.183 17 N -0.200 5.200 18 C -0.011 4.011 19 C -0.174 4.174 20 C -0.052 4.052 21 C -0.171 4.171 22 C -0.143 4.143 23 C 0.045 3.955 24 O -0.370 6.370 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.488 -9.891 -0.813 12.432 hybrid contribution -0.790 0.214 -0.139 0.830 sum -8.279 -9.677 -0.951 12.771 Atomic orbital electron populations 1.20813 0.92099 1.01938 1.02042 1.19511 0.95170 0.92561 0.98168 1.20957 0.93710 0.96799 1.06139 1.18862 0.92245 0.92628 0.91530 1.19054 0.94462 0.91139 1.23796 1.20662 0.97564 0.92272 0.95218 1.21436 0.95532 0.96906 1.15593 1.18679 0.88687 0.91863 0.87900 1.19808 0.91075 0.93180 1.39552 0.89378 1.26210 0.98806 0.97754 0.93730 1.70118 1.10341 1.25458 1.25896 0.86238 0.79146 0.81562 0.79475 1.19144 1.19857 1.18320 1.68807 1.36868 0.96516 1.17837 1.22783 0.89654 0.96937 0.91681 1.21003 0.99554 0.91092 1.05710 1.19521 0.92757 0.94982 0.97953 1.20814 0.99979 0.94652 1.01668 1.18978 0.92708 0.92989 1.09618 1.20939 0.97562 0.93699 0.83315 1.86654 1.79433 1.44012 1.26937 0.91369 0.91954 0.91929 0.86543 0.88313 0.88118 0.91124 0.85976 0.86176 0.91672 0.91631 0.91610 0.93381 0.93220 0.78390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.59 36.01 0.35 -1.07 16 2 C -0.05 -0.88 5.87 -104.67 -0.61 -1.49 16 3 C -0.16 -2.88 9.09 -39.18 -0.36 -3.24 16 4 C 0.05 0.98 5.88 -104.88 -0.62 0.36 16 5 C -0.28 -6.37 5.92 -104.45 -0.62 -6.98 16 6 C -0.03 -0.77 9.46 -39.38 -0.37 -1.14 16 7 C -0.27 -6.58 9.76 -39.15 -0.38 -6.97 16 8 C 0.25 6.74 6.55 -84.98 -0.56 6.19 16 9 C -0.41 -10.50 9.12 -37.84 -0.35 -10.85 16 10 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 11 C 0.06 1.53 5.50 -17.33 -0.10 1.43 16 12 N -0.70 -17.96 11.44 55.56 0.64 -17.33 16 13 Si 0.91 17.75 29.56 -169.99 -5.02 12.72 16 14 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 17 N -0.49 -13.31 7.83 -10.84 -0.08 -13.39 16 18 C 0.16 3.87 10.60 -17.13 -0.18 3.69 16 19 C -0.16 -2.88 9.09 -39.18 -0.36 -3.23 16 20 C -0.05 -0.85 5.87 -104.68 -0.61 -1.47 16 21 C -0.11 -1.48 9.18 36.01 0.33 -1.15 16 22 C -0.14 -2.25 5.52 -104.51 -0.58 -2.83 16 23 C 0.12 1.47 5.94 36.01 0.21 1.68 16 24 O -0.57 -6.86 13.62 -35.23 -0.48 -7.34 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.06 0.68 5.93 -51.93 -0.31 0.37 16 28 H 0.12 2.01 6.25 -52.49 -0.33 1.68 16 29 H 0.10 1.94 6.30 -52.49 -0.33 1.61 16 30 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 31 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 32 H 0.12 2.69 6.21 -52.49 -0.33 2.36 16 33 H 0.12 2.13 6.22 -52.49 -0.33 1.81 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.06 0.79 6.67 -51.92 -0.35 0.44 16 37 H 0.05 0.51 6.68 -51.93 -0.35 0.16 16 38 H 0.05 0.52 5.92 -51.93 -0.31 0.21 16 39 H 0.37 2.47 9.12 45.56 0.42 2.88 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -30.37 322.68 -8.75 -39.12 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.86 Total: 8.41 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -4.80 Total: -27.06 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.55 Total: -30.72 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.48 Total: -7.34 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.37 -8.75 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244693384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.216 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds